Wall clock time and date at job start Tue Mar 31 2020 20:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21480 * 119.99838 * 359.97438 * 7 6 5 9 9 C 1.48459 * 119.99961 * 179.97438 * 7 6 5 10 10 C 1.39533 * 120.55094 * 179.97438 * 9 7 6 11 11 C 1.38759 * 118.26570 * 179.97438 * 10 9 7 12 12 N 1.32207 * 119.14468 * 0.02562 * 11 10 9 13 13 C 1.31879 * 121.03592 * 359.97438 * 12 11 10 14 14 N 1.31581 * 121.92148 * 359.73441 * 13 12 11 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 30 30 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.07999 * 120.86673 * 0.02562 * 10 9 7 37 37 H 1.07996 * 120.42838 * 180.02562 * 11 10 9 38 38 H 1.08002 * 119.04194 * 180.02562 * 13 12 11 39 39 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 40 40 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 41 41 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 42 42 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1596 -0.7990 2.0230 9 6 5.8688 -2.0394 3.9878 10 6 7.2338 -2.0836 4.2736 11 6 7.6439 -2.7500 5.4196 12 7 6.7352 -3.3162 6.1951 13 6 5.4524 -3.2556 5.8954 14 7 5.0173 -2.6300 4.8227 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.2888 1.1306 -7.7834 24 14 4.1903 -1.2601 -8.8567 25 1 4.3951 -2.6225 -8.3022 26 1 3.2076 -1.3203 -9.9685 27 1 5.4823 -0.7341 -9.3659 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5137 -0.8900 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 7.9523 -1.6108 3.6205 37 1 8.6918 -2.8054 5.6746 38 1 4.7376 -3.7292 6.5521 39 1 2.2491 -1.6319 -1.1524 40 1 3.6539 -1.1197 -3.3923 41 1 1.9842 -1.5494 -3.8349 42 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077977338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:31 Heat of formation + Delta-G solvation = -30.941212 kcal Electronic energy + Delta-G solvation = -25073.488432 eV Core-core repulsion = 21179.875373 eV Total energy + Delta-G solvation = -3893.613059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72979 -39.89876 -39.34225 -36.71161 -34.94560 -34.30201 -32.67076 -32.41788 -31.83590 -29.57515 -28.48131 -26.21102 -25.47413 -24.96440 -23.61209 -21.68287 -21.30653 -20.34780 -18.96079 -18.18164 -17.81492 -16.64281 -16.36691 -16.12141 -16.05098 -15.99468 -15.79132 -15.14068 -14.90565 -14.79404 -14.35309 -14.26647 -14.16764 -13.80127 -13.61709 -13.23461 -12.91918 -12.64851 -12.17033 -11.95255 -11.84358 -11.60727 -11.56190 -11.40946 -11.13773 -11.05972 -11.00640 -10.83419 -10.74093 -10.35685 -9.92158 -9.79444 -9.51883 -9.38452 -9.06853 -8.92551 -8.21935 -6.48475 -6.20762 -3.90928 -0.07842 0.31596 2.27918 2.46778 3.03465 3.09895 3.22405 3.26800 3.28958 3.32853 3.33646 3.53657 3.71450 3.98155 4.21390 4.26811 4.40445 4.44455 4.62559 4.70453 4.93662 5.03098 5.14482 5.15451 5.20013 5.29002 5.31944 5.52510 5.58583 5.63863 5.66203 5.69487 5.90133 5.92643 5.99121 6.14828 6.16895 6.18737 6.64355 6.96607 7.34477 7.61008 7.65389 7.69894 8.36536 8.61724 9.24791 10.86716 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.001959 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.294975 B =14288.812124 C =15743.340831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.138 4.138 5 C 0.114 3.886 6 N -0.706 5.706 7 C 0.566 3.434 8 O -0.516 6.516 9 C 0.133 3.867 10 C -0.168 4.168 11 C 0.152 3.848 12 N -0.507 5.507 13 C 0.294 3.706 14 N -0.498 5.498 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.411 0.589 36 H 0.163 0.837 37 H 0.179 0.821 38 H 0.204 0.796 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 -10.022 29.663 31.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.176 4.176 5 C -0.009 4.009 6 N -0.358 5.358 7 C 0.348 3.652 8 O -0.390 6.390 9 C -0.015 4.015 10 C -0.191 4.191 11 C -0.015 4.015 12 N -0.221 5.221 13 C 0.006 3.994 14 N -0.215 5.215 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.247 0.753 36 H 0.181 0.819 37 H 0.196 0.804 38 H 0.220 0.780 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.067 -7.899 29.435 30.495 hybrid contribution 1.142 -2.434 -0.981 2.862 sum 2.209 -10.333 28.454 30.352 Atomic orbital electron populations 1.22171 0.94935 1.02144 1.02867 1.20776 0.94236 0.97734 0.83131 0.88995 1.22114 0.94182 1.02305 0.98985 1.21556 0.94036 0.98167 0.87156 1.45837 1.07044 1.55785 1.27103 1.17807 0.83068 0.80291 0.83997 1.90869 1.55521 1.44742 1.47876 1.21670 0.91160 0.94454 0.94228 1.23059 0.97113 0.99602 0.99347 1.23422 1.00421 0.88983 0.88706 1.68387 1.03351 1.18422 1.31982 1.25025 0.91083 0.91947 0.91354 1.68341 1.39766 1.08722 1.04689 1.46138 1.69535 1.13885 1.09571 1.20297 0.76737 0.87208 0.83741 1.90701 1.48265 1.15702 1.84336 1.23541 1.03639 1.04878 0.98451 1.85386 1.86030 1.12921 0.99010 1.22910 1.50688 0.98182 0.96506 0.90898 1.24996 0.95138 0.95545 0.97963 1.70030 1.45589 1.13184 1.21477 0.86116 0.78536 0.80133 0.80701 1.19635 1.20582 1.20560 0.92501 0.91837 0.91401 0.89547 0.90435 0.90398 0.90567 0.75267 0.81938 0.80431 0.77993 0.76916 0.89235 0.89276 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 2 C 0.15 1.51 2.57 -67.93 -0.17 1.33 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 4 C -0.14 -0.92 4.87 -26.73 -0.13 -1.05 16 5 C 0.11 1.01 5.56 -4.04 -0.02 0.98 16 6 N -0.71 -5.75 5.55 -61.05 -0.34 -6.09 16 7 C 0.57 5.86 7.83 -12.05 -0.09 5.76 16 8 O -0.52 -7.15 16.43 5.38 0.09 -7.06 16 9 C 0.13 1.13 6.79 -82.63 -0.56 0.57 16 10 C -0.17 -1.17 9.72 -38.91 -0.38 -1.55 16 11 C 0.15 0.84 11.31 -17.20 -0.19 0.65 16 12 N -0.51 -3.45 10.42 -14.60 -0.15 -3.60 16 13 C 0.29 1.78 12.27 -92.26 -1.13 0.65 16 14 N -0.50 -3.68 9.70 -11.14 -0.11 -3.78 16 15 N -0.74 -9.10 4.53 -53.80 -0.24 -9.35 16 16 C 0.53 9.67 7.81 -10.98 -0.09 9.58 16 17 O -0.52 -11.42 15.52 5.55 0.09 -11.34 16 18 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.98 7.80 -52.48 -0.41 1.58 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 24 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.81 7.75 -51.93 -0.40 0.41 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.41 2.51 7.86 -40.82 -0.32 2.19 16 36 H 0.16 1.01 7.74 -52.49 -0.41 0.61 16 37 H 0.18 0.39 8.06 -52.49 -0.42 -0.04 16 38 H 0.20 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.40 3.84 8.60 -40.82 -0.35 3.49 16 40 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -37.68 383.09 -9.04 -46.72 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.65 Total: 1.80 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.00 Total: -0.21 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.11 Total: -48.39 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.17 Total: -18.40 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.68 -9.04 -46.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077977338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.780 kcal (2) G-P(sol) polarization free energy of solvation -37.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds