Wall clock time and date at job start Tue Mar 31 2020 20:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46945 * 2 1 4 4 C 1.50698 * 109.47381 * 239.99999 * 2 1 3 5 5 O 1.21278 * 120.00090 * 239.99932 * 4 2 1 6 6 N 1.34781 * 119.99725 * 59.99921 * 4 2 1 7 7 C 1.46502 * 119.99894 * 180.02562 * 6 4 2 8 8 H 1.08998 * 110.63870 * 31.86009 * 7 6 4 9 9 C 1.54326 * 111.00089 * 268.78251 * 7 6 4 10 10 N 1.47029 * 107.26545 * 219.60152 * 9 7 6 11 11 C 1.36936 * 125.64927 * 178.85396 * 10 9 7 12 12 H 1.08000 * 119.99664 * 347.78467 * 11 10 9 13 13 C 1.38814 * 119.99940 * 167.78993 * 11 10 9 14 14 N 1.31611 * 119.99770 * 325.97326 * 13 11 10 15 15 Si 1.86803 * 119.99856 * 145.97398 * 13 11 10 16 16 H 1.48498 * 109.47176 * 59.99787 * 15 13 11 17 17 H 1.48504 * 109.47098 * 299.99679 * 15 13 11 18 18 H 1.48503 * 109.46709 * 179.97438 * 15 13 11 19 19 C 1.47428 * 108.69950 * 358.58471 * 10 9 7 20 20 C 1.54911 * 104.83117 * 24.35676 * 19 10 9 21 21 H 1.08994 * 111.00096 * 81.06545 * 20 19 10 22 22 O 1.42905 * 111.00117 * 204.91505 * 20 19 10 23 23 C 1.50694 * 109.47051 * 119.99871 * 2 1 3 24 24 C 1.38268 * 119.99204 * 59.72554 * 23 2 1 25 25 C 1.38225 * 120.02144 * 179.76666 * 24 23 2 26 26 C 1.38237 * 120.01722 * 0.50721 * 25 24 23 27 27 C 1.38333 * 119.98277 * 359.74886 * 26 25 24 28 28 Cl 1.73601 * 120.00710 * 179.97438 * 27 26 25 29 29 C 1.38200 * 119.99689 * 240.00212 * 23 2 1 30 30 H 1.09005 * 109.47140 * 59.99996 * 1 2 3 31 31 H 1.09005 * 109.46945 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47437 * 299.99985 * 1 2 3 33 33 H 0.97000 * 120.00291 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.99550 * 100.12586 * 9 7 6 35 35 H 1.09001 * 109.78084 * 338.95674 * 9 7 6 36 36 H 0.97001 * 120.00692 * 354.24878 * 14 13 11 37 37 H 1.09001 * 110.36401 * 143.19907 * 19 10 9 38 38 H 1.09004 * 110.36635 * 265.51575 * 19 10 9 39 39 H 0.96705 * 113.99844 * 298.54883 * 22 20 19 40 40 H 1.07994 * 119.98978 * 359.97438 * 24 23 2 41 41 H 1.07999 * 119.98773 * 180.23784 * 25 24 23 42 42 H 1.07999 * 120.00799 * 179.72628 * 26 25 24 43 43 H 1.08001 * 119.99971 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6964 -1.1191 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9408 -3.6507 8 1 2.2912 -2.0103 -3.4642 9 6 3.5409 -0.3500 -4.1202 10 7 3.5080 -0.3028 -5.5894 11 6 4.5055 0.1782 -6.3950 12 1 5.3206 0.7425 -5.9665 13 6 4.4688 -0.0594 -7.7621 14 7 3.9714 -1.1883 -8.2207 15 14 5.1254 1.2232 -8.9509 16 1 6.5621 1.4707 -8.6682 17 1 4.3635 2.4872 -8.7859 18 1 4.9730 0.7311 -10.3437 19 6 2.2260 -0.8650 -6.0518 20 6 1.2568 -0.6766 -4.8581 21 1 0.8625 0.3392 -4.8317 22 8 0.1971 -1.6343 -4.9028 23 6 2.0323 -0.7104 1.2304 24 6 1.6935 -2.0324 1.4520 25 6 2.1579 -2.6860 2.5779 26 6 2.9527 -2.0152 3.4885 27 6 3.2876 -0.6909 3.2700 28 17 4.2851 0.1524 4.4135 29 6 2.8268 -0.0386 2.1401 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.1494 0.5390 -2.5436 34 1 4.3625 -0.9846 -3.7881 35 1 3.6618 0.6565 -3.7196 36 1 3.7075 -1.8884 -7.6033 37 1 1.8649 -0.3192 -6.9236 38 1 2.3385 -1.9236 -6.2859 39 1 -0.3579 -1.5702 -5.6921 40 1 1.0686 -2.5556 0.7434 41 1 1.8960 -3.7198 2.7485 42 1 3.3118 -2.5247 4.3705 43 1 3.0880 0.9952 1.9689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078206247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:00 Heat of formation + Delta-G solvation = -45.334409 kcal Electronic energy + Delta-G solvation = -26744.581607 eV Core-core repulsion = 22816.007955 eV Total energy + Delta-G solvation = -3928.573652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52098 -39.21163 -38.01974 -36.68837 -35.33379 -34.44013 -34.13750 -31.83986 -31.03005 -29.73146 -28.31641 -27.29062 -25.09854 -24.17627 -22.93058 -22.28019 -20.82764 -20.37463 -19.94200 -17.75867 -17.33574 -17.22693 -16.89237 -16.04773 -15.77117 -15.47893 -14.85530 -14.55738 -14.29006 -14.10972 -13.89531 -13.71437 -13.60143 -13.58115 -13.19308 -12.80742 -12.61385 -12.52256 -12.22715 -12.08710 -11.77674 -11.64751 -11.62543 -11.52531 -11.34395 -11.00661 -10.81133 -10.57870 -10.18521 -10.06002 -10.00283 -9.75607 -9.54184 -9.12653 -8.91320 -8.84815 -8.41526 -7.08617 -6.23262 -3.18211 0.96115 1.03381 1.89435 2.67338 3.10454 3.47081 3.49429 3.51851 3.68770 4.20622 4.26606 4.48835 4.56886 4.68236 4.78628 4.84691 4.91909 5.01134 5.05837 5.18322 5.19792 5.34926 5.37471 5.42651 5.50489 5.52348 5.55315 5.64688 5.79213 5.88180 5.91448 5.96665 6.12972 6.28891 6.32898 6.53191 6.56840 6.66572 6.77806 6.82724 7.56109 7.67012 7.84835 8.28041 8.39355 8.90108 9.72024 10.23835 11.10756 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017137 B = 0.002455 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.470763 B =11404.156340 C =12335.875676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 H 0.107 0.893 4 C 0.518 3.482 5 O -0.529 6.529 6 N -0.713 5.713 7 C 0.143 3.857 8 H 0.103 0.897 9 C 0.130 3.870 10 N -0.597 5.597 11 C -0.346 4.346 12 H 0.070 0.930 13 C -0.021 4.021 14 N -0.906 5.906 15 Si 1.058 2.942 16 H -0.292 1.292 17 H -0.294 1.294 18 H -0.285 1.285 19 C 0.120 3.880 20 C 0.077 3.923 21 H 0.067 0.933 22 O -0.563 6.563 23 C -0.052 4.052 24 C -0.078 4.078 25 C -0.108 4.108 26 C -0.111 4.111 27 C -0.037 4.037 28 Cl -0.076 7.076 29 C -0.103 4.103 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.269 0.731 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.378 0.622 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.188 2.765 21.512 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 H 0.125 0.875 4 C 0.303 3.697 5 O -0.404 6.404 6 N -0.363 5.363 7 C 0.038 3.962 8 H 0.121 0.879 9 C 0.003 3.997 10 N -0.326 5.326 11 C -0.473 4.473 12 H 0.088 0.912 13 C -0.223 4.223 14 N -0.546 5.546 15 Si 0.887 3.113 16 H -0.219 1.219 17 H -0.221 1.221 18 H -0.211 1.211 19 C -0.007 4.007 20 C 0.017 3.983 21 H 0.085 0.915 22 O -0.367 6.367 23 C -0.053 4.053 24 C -0.097 4.097 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.063 4.063 28 Cl -0.047 7.047 29 C -0.121 4.121 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.233 0.767 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.226 0.774 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.056 2.345 20.598 22.623 hybrid contribution -0.333 0.269 1.108 1.187 sum -9.389 2.614 21.706 23.794 Atomic orbital electron populations 1.21804 0.91618 1.03336 1.03049 1.20315 0.97964 1.00421 0.90675 0.87483 1.20338 0.80346 0.84737 0.84289 1.90743 1.37169 1.26036 1.86475 1.45901 1.53335 1.31772 1.05339 1.21965 0.93393 0.98346 0.82463 0.87944 1.21661 0.93722 0.97948 0.86383 1.44418 1.14643 1.73874 0.99627 1.19714 1.05212 1.31687 0.90724 0.91203 1.25715 1.01005 0.99862 0.95755 1.70800 1.42673 1.02890 1.38196 0.83626 0.75690 0.75614 0.76330 1.21899 1.22092 1.21073 1.22135 0.85987 0.98199 0.94390 1.23353 0.87314 0.91161 0.96462 0.91534 1.86452 1.44669 1.58485 1.47138 1.19237 0.97318 0.94354 0.94353 1.21058 0.98556 0.93672 0.96365 1.21088 0.97521 1.00063 0.93996 1.21039 0.98909 0.92634 1.00427 1.20806 0.98741 0.93593 0.93187 1.98366 1.68481 1.77941 1.59908 1.20883 0.97796 1.00484 0.92964 0.91374 0.91618 0.91124 0.76744 0.94821 0.94933 0.92042 0.92333 0.94590 0.77432 0.85517 0.85052 0.85110 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.90 37.16 0.33 -0.73 16 2 C -0.07 -0.72 2.90 -92.93 -0.27 -0.99 16 3 H 0.11 0.87 7.88 -51.93 -0.41 0.46 16 4 C 0.52 7.30 7.03 -10.98 -0.08 7.22 16 5 O -0.53 -9.67 14.77 5.56 0.08 -9.59 16 6 N -0.71 -9.84 5.01 -52.03 -0.26 -10.10 16 7 C 0.14 2.56 3.04 -66.10 -0.20 2.36 16 8 H 0.10 2.08 7.55 -51.93 -0.39 1.69 16 9 C 0.13 2.78 7.01 -3.06 -0.02 2.76 16 10 N -0.60 -14.96 3.33 -170.06 -0.57 -15.52 16 11 C -0.35 -9.71 9.97 -15.06 -0.15 -9.86 16 12 H 0.07 1.97 8.02 -52.49 -0.42 1.55 16 13 C -0.02 -0.59 4.95 -17.43 -0.09 -0.67 16 14 N -0.91 -26.92 12.87 55.49 0.71 -26.21 16 15 Si 1.06 24.84 30.03 -169.99 -5.10 19.73 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.12 2.66 5.07 -2.53 -0.01 2.65 16 20 C 0.08 1.33 4.06 -24.58 -0.10 1.23 16 21 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 22 O -0.56 -8.72 13.47 -35.23 -0.47 -9.19 16 23 C -0.05 -0.57 4.39 -104.63 -0.46 -1.03 16 24 C -0.08 -0.87 7.94 -39.58 -0.31 -1.18 16 25 C -0.11 -1.06 10.05 -39.59 -0.40 -1.46 16 26 C -0.11 -1.09 9.83 -39.55 -0.39 -1.47 16 27 C -0.04 -0.39 6.32 -39.50 -0.25 -0.64 16 28 Cl -0.08 -0.75 28.96 -51.86 -1.50 -2.25 16 29 C -0.10 -1.08 9.46 -39.55 -0.37 -1.46 16 30 H 0.07 0.44 7.57 -51.93 -0.39 0.05 16 31 H 0.06 0.54 7.37 -51.93 -0.38 0.15 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.40 4.30 7.98 -40.82 -0.33 3.97 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 36 H 0.27 8.07 6.45 -40.82 -0.26 7.81 16 37 H 0.06 1.38 7.82 -51.93 -0.41 0.98 16 38 H 0.04 0.88 7.03 -51.93 -0.36 0.52 16 39 H 0.38 4.33 9.11 45.56 0.42 4.74 16 40 H 0.13 1.40 7.51 -52.49 -0.39 1.00 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.19 7.95 -52.49 -0.42 0.77 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -34.16 371.34 -9.36 -43.52 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.07 Total: 7.30 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.77 Total: -3.28 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.11 Total: -51.84 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.39 Total: -18.78 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.10 Total: 19.73 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.16 -9.36 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078206247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.816 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds