Wall clock time and date at job start Tue Mar 31 2020 20:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 N 1.46498 * 109.47226 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00351 * 180.02562 * 6 5 4 8 8 O 1.21519 * 119.99813 * 359.97438 * 7 6 5 9 9 C 1.48127 * 120.00371 * 179.97438 * 7 6 5 10 10 C 1.40119 * 121.14571 * 179.71971 * 9 7 6 11 11 C 1.38505 * 117.82203 * 179.73947 * 10 9 7 12 12 N 1.31924 * 119.96744 * 0.53487 * 11 10 9 13 13 N 1.28273 * 122.51595 * 359.72317 * 12 11 10 14 14 C 1.31931 * 122.32982 * 359.97438 * 13 12 11 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47083 * 60.00261 * 24 22 20 26 26 H 1.48506 * 109.46585 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47209 * 299.99712 * 24 22 20 28 28 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 29 29 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 31 31 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 32 32 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 33 33 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 34 34 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 35 35 H 0.97007 * 119.99883 * 359.97438 * 6 5 4 36 36 H 1.07992 * 121.08806 * 359.96854 * 10 9 7 37 37 H 1.07994 * 120.01841 * 180.25471 * 11 10 9 38 38 H 1.07999 * 120.17213 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 40 40 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 41 41 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 42 42 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 7 4.0532 -1.3041 2.5096 7 6 5.3741 -1.3394 2.7753 8 8 6.1599 -0.7985 2.0227 9 6 5.8679 -2.0376 3.9848 10 6 7.2362 -2.0942 4.2811 11 6 7.6213 -2.7603 5.4328 12 7 6.7111 -3.3242 6.2034 13 7 5.4575 -3.2806 5.9351 14 6 4.9855 -2.6670 4.8668 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.2657 1.1255 -7.7894 24 14 4.1629 -1.2664 -8.8641 25 1 3.2133 -2.3910 -9.0612 26 1 4.2963 -0.5027 -10.1307 27 1 5.4899 -1.8026 -8.4679 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4260 34 1 3.8531 0.4372 1.3574 35 1 3.4259 -1.7356 3.1107 36 1 7.9663 -1.6303 3.6346 37 1 8.6665 -2.8219 5.6974 38 1 3.9229 -2.6515 4.6748 39 1 2.2491 -1.6317 -1.1525 40 1 3.6494 -1.1203 -3.3979 41 1 1.9778 -1.5509 -3.8325 42 1 3.4096 1.4699 -8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078712184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:36 Heat of formation + Delta-G solvation = -20.950142 kcal Electronic energy + Delta-G solvation = -25075.343647 eV Core-core repulsion = 21182.163833 eV Total energy + Delta-G solvation = -3893.179813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.78042 -40.04982 -39.41833 -36.80059 -35.01420 -33.85739 -33.23191 -32.43604 -31.86363 -29.62013 -28.52370 -26.24327 -25.49111 -25.17792 -23.65238 -21.82814 -21.31045 -20.39896 -18.88489 -18.26942 -17.84109 -17.01107 -16.70135 -16.39253 -16.11055 -15.85169 -15.76528 -15.31067 -14.93969 -14.81027 -14.38247 -14.24475 -14.05961 -13.86712 -13.69073 -13.27905 -12.97946 -12.67693 -12.23180 -12.00422 -11.93172 -11.71401 -11.57279 -11.21206 -11.05413 -11.04330 -10.97546 -10.85275 -10.77838 -10.77294 -10.23370 -9.83352 -9.67950 -9.42750 -9.07451 -8.97616 -8.25350 -6.50856 -6.22197 -3.92895 -0.30071 0.21749 2.18808 2.36085 2.99742 3.02518 3.05636 3.23010 3.26850 3.30002 3.40934 3.63187 3.67415 3.87612 3.91970 4.19861 4.21413 4.29974 4.53421 4.60771 4.63786 4.97984 5.10512 5.11863 5.12939 5.13469 5.22578 5.25675 5.44361 5.44773 5.53121 5.57340 5.64027 5.78728 5.86707 5.93434 6.10756 6.12868 6.59102 6.78069 7.50299 7.58494 7.64756 7.99434 8.34277 8.57319 9.22999 10.85135 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.001951 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.685808 B =14348.031037 C =15792.325194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.115 3.885 6 N -0.720 5.720 7 C 0.559 3.441 8 O -0.515 6.515 9 C -0.132 4.132 10 C -0.056 4.056 11 C 0.041 3.959 12 N -0.227 5.227 13 N -0.241 5.241 14 C 0.069 3.931 15 N -0.737 5.737 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.400 0.600 36 H 0.166 0.834 37 H 0.183 0.817 38 H 0.175 0.825 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 -8.772 27.588 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.177 4.177 5 C -0.007 4.007 6 N -0.372 5.372 7 C 0.343 3.657 8 O -0.390 6.390 9 C -0.146 4.146 10 C -0.086 4.086 11 C -0.123 4.123 12 N -0.070 5.070 13 N -0.082 5.082 14 C -0.096 4.096 15 N -0.392 5.392 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.236 0.764 36 H 0.183 0.817 37 H 0.200 0.800 38 H 0.192 0.808 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.948 -7.112 28.157 29.057 hybrid contribution 0.841 -1.942 -1.847 2.809 sum 1.789 -9.054 26.311 27.882 Atomic orbital electron populations 1.22175 0.94891 1.02165 1.02919 1.20766 0.94270 0.97744 0.83100 0.88980 1.22127 0.94131 1.02319 0.99120 1.21546 0.93998 0.98213 0.86984 1.45887 1.06840 1.56892 1.27581 1.17906 0.82812 0.80355 0.84601 1.90873 1.55190 1.44524 1.48397 1.21260 0.95596 1.00475 0.97271 1.22717 0.95833 0.93697 0.96377 1.24477 1.02380 0.93859 0.91602 1.72932 0.96414 1.12586 1.25027 1.73102 1.07134 1.12980 1.15022 1.24540 1.01764 0.92399 0.90938 1.46137 1.69586 1.13869 1.09590 1.20305 0.76709 0.87215 0.83745 1.90702 1.48146 1.15741 1.84349 1.23543 1.03658 1.04891 0.98435 1.85386 1.86235 1.12916 0.98732 1.22824 1.51085 0.98157 0.96400 0.90999 1.24991 0.95085 0.95540 0.97954 1.70001 1.45451 1.13202 1.21608 0.86229 0.79329 0.80010 0.79955 1.19947 1.20802 1.19937 0.91364 0.92489 0.91822 0.89533 0.90417 0.90305 0.90479 0.76427 0.81664 0.80007 0.80847 0.76926 0.89250 0.89264 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.15 1.38 2.57 -67.94 -0.17 1.21 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C -0.14 -0.75 4.87 -26.73 -0.13 -0.88 16 5 C 0.12 0.86 5.56 -4.04 -0.02 0.84 16 6 N -0.72 -4.21 5.52 -61.16 -0.34 -4.54 16 7 C 0.56 4.76 7.80 -12.20 -0.10 4.67 16 8 O -0.51 -6.59 16.49 5.35 0.09 -6.50 16 9 C -0.13 -0.89 5.92 -104.58 -0.62 -1.51 16 10 C -0.06 -0.34 9.77 -38.78 -0.38 -0.72 16 11 C 0.04 0.23 11.30 -17.41 -0.20 0.03 16 12 N -0.23 -1.93 11.48 30.53 0.35 -1.58 16 13 N -0.24 -2.04 11.49 30.78 0.35 -1.69 16 14 C 0.07 0.40 10.84 -16.95 -0.18 0.21 16 15 N -0.74 -8.60 4.53 -53.81 -0.24 -8.84 16 16 C 0.53 9.39 7.81 -10.98 -0.09 9.31 16 17 O -0.52 -11.17 15.53 5.56 0.09 -11.09 16 18 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 24 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.73 7.75 -51.93 -0.40 0.33 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 0.99 6.63 -40.82 -0.27 0.72 16 36 H 0.17 0.84 7.80 -52.49 -0.41 0.44 16 37 H 0.18 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.17 0.36 6.53 -52.49 -0.34 0.02 16 39 H 0.40 3.54 8.60 -40.82 -0.35 3.19 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -38.67 380.99 -7.10 -45.76 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.52 Total: -0.73 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.11 Total: -3.71 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.86 Total: -42.03 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.17 Total: -17.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.67 -7.10 -45.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078712184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.814 kcal (2) G-P(sol) polarization free energy of solvation -38.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds