Wall clock time and date at job start Tue Mar 31 2020 20:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21278 * 120.00019 * 2 1 4 4 N 1.34772 * 119.99744 * 179.97438 * 2 1 3 5 5 C 1.38898 * 119.99998 * 179.97438 * 4 2 1 6 6 N 1.29511 * 125.26952 * 180.28464 * 5 4 2 7 7 C 1.33644 * 115.66840 * 180.22104 * 6 5 4 8 8 C 1.47195 * 122.50543 * 179.75628 * 7 6 5 9 9 O 1.21647 * 120.00080 * 179.70967 * 8 7 6 10 10 N 1.34774 * 119.99605 * 359.71609 * 8 7 6 11 11 C 1.46505 * 119.99680 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.78108 * 36.78466 * 11 10 8 13 13 C 1.54320 * 110.72204 * 273.54314 * 11 10 8 14 14 N 1.47026 * 107.40273 * 219.52095 * 13 11 10 15 15 C 1.36936 * 125.64687 * 178.82120 * 14 13 11 16 16 H 1.08003 * 119.99609 * 174.91637 * 15 14 13 17 17 C 1.38809 * 120.00139 * 354.92806 * 15 14 13 18 18 N 1.31620 * 120.00245 * 7.07121 * 17 15 14 19 19 Si 1.86804 * 119.99872 * 187.07024 * 17 15 14 20 20 H 1.48495 * 109.46955 * 94.98548 * 19 17 15 21 21 H 1.48503 * 109.46745 * 214.98676 * 19 17 15 22 22 H 1.48498 * 109.46999 * 334.98274 * 19 17 15 23 23 C 1.47419 * 108.69996 * 358.86516 * 14 13 11 24 24 C 1.54903 * 104.83704 * 24.12919 * 23 14 13 25 25 H 1.08994 * 111.00866 * 81.06515 * 24 23 14 26 26 C 1.53000 * 111.00498 * 204.87874 * 24 23 14 27 27 C 1.34897 * 114.99114 * 359.48972 * 7 6 5 28 28 S 1.70976 * 109.19932 * 0.26745 * 27 7 6 29 29 H 1.08998 * 109.47380 * 270.00739 * 1 2 3 30 30 H 1.09000 * 109.46902 * 30.00380 * 1 2 3 31 31 H 1.09000 * 109.47282 * 149.99634 * 1 2 3 32 32 H 0.97001 * 120.00230 * 0.02562 * 4 2 1 33 33 H 0.97001 * 120.00421 * 359.97438 * 10 8 7 34 34 H 1.08994 * 109.88209 * 100.02636 * 13 11 10 35 35 H 1.09004 * 109.88353 * 339.01664 * 13 11 10 36 36 H 0.96994 * 119.99994 * 180.02562 * 18 17 15 37 37 H 1.09004 * 110.36581 * 142.96535 * 23 14 13 38 38 H 1.09001 * 110.36512 * 265.17458 * 23 14 13 39 39 H 1.09004 * 109.47055 * 58.54227 * 26 24 23 40 40 H 1.09002 * 109.47328 * 178.53904 * 26 24 23 41 41 H 1.08993 * 109.47237 * 298.54288 * 26 24 23 42 42 H 1.08004 * 125.39821 * 180.24949 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5699 -1.1672 0.0000 6 7 4.3176 -2.2247 -0.0048 7 6 5.6354 -2.0018 0.0002 8 6 6.6223 -3.0939 0.0011 9 8 7.8117 -2.8389 0.0005 10 7 6.2080 -4.3764 0.0025 11 6 7.1902 -5.4634 0.0028 12 1 8.0555 -5.2026 0.6123 13 6 7.6216 -5.8100 -1.4378 14 7 7.7447 -7.2728 -1.5201 15 6 8.0862 -7.9832 -2.6399 16 1 8.2302 -9.0518 -2.5783 17 6 8.2476 -7.3298 -3.8539 18 7 8.2101 -6.0151 -3.9039 19 14 8.5180 -8.3166 -5.4169 20 1 7.2175 -8.5221 -6.1037 21 1 9.4410 -7.5776 -6.3153 22 1 9.1104 -9.6344 -5.0740 23 6 7.4385 -7.8480 -0.1978 24 6 6.5484 -6.7889 0.4991 25 1 5.5135 -6.8681 0.1662 26 6 6.6424 -6.9094 2.0214 27 6 5.9935 -0.7013 -0.0012 28 16 4.5860 0.2694 -0.0018 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6959 -2.0072 0.0005 33 1 5.2595 -4.5798 0.0033 34 1 8.5817 -5.3442 -1.6594 35 1 6.8686 -5.4610 -2.1444 36 1 8.3225 -5.5587 -4.7523 37 1 6.8950 -8.7864 -0.3089 38 1 8.3562 -8.0067 0.3686 39 1 7.6796 -6.7841 2.3324 40 1 6.0282 -6.1377 2.4856 41 1 6.2865 -7.8920 2.3308 42 1 7.0083 -0.3318 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080027643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:20 Heat of formation + Delta-G solvation = 4.951092 kcal Electronic energy + Delta-G solvation = -26605.517110 eV Core-core repulsion = 22713.460459 eV Total energy + Delta-G solvation = -3892.056652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.81721 -40.05786 -38.63875 -37.27879 -35.27338 -33.83565 -32.53804 -31.19919 -30.33381 -29.44730 -27.99185 -25.72999 -25.26780 -23.63102 -22.49191 -21.77135 -20.33175 -19.87860 -19.39337 -18.61061 -17.36450 -17.13247 -16.87038 -16.34543 -16.30066 -15.61257 -15.04248 -14.77786 -14.71071 -14.16281 -13.87537 -13.62571 -13.39043 -13.24816 -13.08577 -12.84825 -12.73222 -12.66447 -12.11835 -11.94363 -11.66007 -11.33087 -11.29219 -10.96898 -10.75755 -10.58841 -10.57244 -10.33994 -10.13008 -9.94006 -9.87729 -9.70725 -9.60430 -9.53295 -8.58952 -8.52532 -8.31661 -6.78135 -5.65342 -2.99630 0.46773 0.83459 1.61268 1.63079 2.20244 2.31503 3.43408 3.47931 3.51035 3.58758 3.70444 4.05883 4.34229 4.54612 4.60810 4.76882 5.08401 5.16456 5.25245 5.31765 5.35054 5.48124 5.50634 5.59564 5.80576 5.85797 6.03287 6.05105 6.20233 6.24714 6.38540 6.40866 6.54279 6.67205 6.83472 6.99388 7.28361 7.33076 7.61322 7.68063 7.90717 8.01463 8.30770 8.61166 9.25963 9.87157 10.52823 11.45446 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.002775 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.291107 B =10088.545799 C =10634.712060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.511 3.489 3 O -0.511 6.511 4 N -0.621 5.621 5 C 0.244 3.756 6 N -0.473 5.473 7 C 0.037 3.963 8 C 0.590 3.410 9 O -0.531 6.531 10 N -0.693 5.693 11 C 0.120 3.880 12 H 0.087 0.913 13 C 0.172 3.828 14 N -0.606 5.606 15 C -0.231 4.231 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.915 5.915 19 Si 0.910 3.090 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.141 3.859 24 C -0.113 4.113 25 H 0.077 0.923 26 C -0.137 4.137 27 C -0.260 4.260 28 S 0.266 5.734 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.426 0.574 33 H 0.404 0.596 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.252 0.748 37 H 0.042 0.958 38 H 0.022 0.978 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.616 11.966 12.253 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.386 6.386 4 N -0.272 5.272 5 C -0.125 4.125 6 N -0.196 5.196 7 C -0.098 4.098 8 C 0.372 3.628 9 O -0.408 6.408 10 N -0.342 5.342 11 C 0.015 3.985 12 H 0.105 0.895 13 C 0.046 3.954 14 N -0.333 5.333 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.562 5.562 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.015 3.985 24 C -0.133 4.133 25 H 0.096 0.904 26 C -0.195 4.195 27 C -0.403 4.403 28 S 0.517 5.483 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.266 0.734 33 H 0.239 0.761 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -16.777 13.480 12.010 24.646 hybrid contribution 0.067 -1.829 -1.013 2.091 sum -16.710 11.652 10.997 23.150 Atomic orbital electron populations 1.21854 0.88600 1.06114 1.05808 1.21339 0.91681 0.82135 0.74991 1.90696 1.69585 1.30674 1.47626 1.42892 1.01602 1.11520 1.71166 1.24296 0.89728 0.93820 1.04664 1.67024 1.03414 1.29405 1.19804 1.19986 0.88475 0.93898 1.07401 1.17039 0.86694 0.82019 0.77027 1.90830 1.15827 1.83644 1.50499 1.45726 1.10618 1.04853 1.73006 1.22574 0.90856 0.84393 1.00672 0.89450 1.21484 1.00565 0.84250 0.89058 1.44415 1.81419 1.01801 1.05633 1.19043 1.40502 0.91225 0.85138 0.90312 1.24854 1.02050 0.95746 0.97721 1.70000 1.55887 1.05894 1.24457 0.86129 0.77418 0.78901 0.83523 1.21700 1.21793 1.20624 1.21579 0.95092 0.94565 0.87289 1.22645 1.00098 0.95742 0.94770 0.90427 1.21695 1.01713 1.00999 0.95062 1.26909 1.07686 0.97690 1.08000 1.84784 0.91295 1.05502 1.66747 0.87763 0.87714 0.89180 0.73440 0.76138 0.93535 0.92983 0.93764 0.93950 0.96055 0.92612 0.93148 0.92727 0.79232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.38 10.30 36.01 0.37 -0.01 16 2 C 0.51 3.62 7.90 -10.98 -0.09 3.53 16 3 O -0.51 -5.47 14.61 5.56 0.08 -5.39 16 4 N -0.62 -4.78 5.40 -11.91 -0.06 -4.85 16 5 C 0.24 2.86 8.36 -87.54 -0.73 2.13 16 6 N -0.47 -6.62 10.11 -10.51 -0.11 -6.73 16 7 C 0.04 0.59 6.66 -84.63 -0.56 0.02 16 8 C 0.59 11.25 7.79 -12.62 -0.10 11.15 16 9 O -0.53 -11.83 16.38 5.24 0.09 -11.74 16 10 N -0.69 -12.55 5.13 -53.04 -0.27 -12.82 16 11 C 0.12 2.42 2.72 -65.96 -0.18 2.24 16 12 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 13 C 0.17 4.44 5.13 -3.06 -0.02 4.43 16 14 N -0.61 -15.94 3.39 -170.08 -0.58 -16.52 16 15 C -0.23 -6.60 10.27 -15.06 -0.15 -6.75 16 16 H 0.08 2.16 7.84 -52.48 -0.41 1.74 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 18 N -0.92 -28.08 10.36 55.49 0.57 -27.50 16 19 Si 0.91 22.64 29.56 -169.99 -5.02 17.61 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.14 2.94 6.70 -2.54 -0.02 2.93 16 24 C -0.11 -1.96 3.25 -88.34 -0.29 -2.25 16 25 H 0.08 1.31 8.01 -51.93 -0.42 0.89 16 26 C -0.14 -1.89 9.30 37.16 0.35 -1.55 16 27 C -0.26 -3.62 10.55 29.55 0.31 -3.31 16 28 S 0.27 3.08 20.29 -107.50 -2.18 0.90 16 29 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.43 2.06 8.82 -40.82 -0.36 1.70 16 33 H 0.40 6.50 8.00 -40.82 -0.33 6.17 16 34 H 0.05 1.39 7.61 -51.93 -0.40 0.99 16 35 H 0.05 1.49 7.17 -51.93 -0.37 1.12 16 36 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.02 0.44 8.04 -51.93 -0.42 0.03 16 39 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.19 2.49 7.99 -52.48 -0.42 2.07 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -36.86 367.30 -8.76 -45.62 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.60 Total: 3.62 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -1.20 Total: 12.27 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -0.45 Total: -68.42 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.17 Total: -17.13 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.18 Total: 0.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.86 -8.76 -45.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080027643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.571 kcal (2) G-P(sol) polarization free energy of solvation -36.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds