Wall clock time and date at job start Tue Mar 31 2020 20:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35935 * 117.00222 * 2 1 4 4 C 1.38416 * 119.98643 * 0.02562 * 3 2 1 5 5 C 1.39542 * 119.80554 * 179.97438 * 4 3 2 6 6 C 1.47801 * 120.10330 * 179.97438 * 5 4 3 7 7 O 1.21555 * 120.00349 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99714 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99672 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.63895 * 36.69176 * 9 8 6 11 11 C 1.54320 * 110.71963 * 273.54723 * 9 8 6 12 12 N 1.47020 * 107.26912 * 219.44497 * 11 9 8 13 13 C 1.36938 * 125.64718 * 178.97852 * 12 11 9 14 14 H 1.08006 * 120.00175 * 179.97438 * 13 12 11 15 15 C 1.38805 * 120.00184 * 359.97438 * 13 12 11 16 16 N 1.31620 * 120.00023 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00328 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46941 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47125 * 119.99959 * 17 15 13 20 20 H 1.48501 * 109.47334 * 239.99886 * 17 15 13 21 21 C 1.47420 * 108.70427 * 358.94372 * 12 11 9 22 22 C 1.54913 * 104.83531 * 24.12664 * 21 12 11 23 23 H 1.08999 * 111.00239 * 81.06115 * 22 21 12 24 24 C 1.52991 * 111.00638 * 204.91586 * 22 21 12 25 25 C 1.39621 * 119.79083 * 359.97438 * 5 4 3 26 26 C 1.37922 * 119.97116 * 0.02562 * 25 5 4 27 27 C 1.38417 * 120.19474 * 359.73667 * 26 25 5 28 28 Cl 1.73603 * 119.89107 * 180.25759 * 27 26 25 29 29 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47220 * 299.99826 * 1 2 3 31 31 H 1.08996 * 109.47672 * 59.99770 * 1 2 3 32 32 H 1.08001 * 120.09674 * 359.97438 * 4 3 2 33 33 H 0.96999 * 119.99849 * 0.02562 * 8 6 5 34 34 H 1.08995 * 109.88751 * 338.86304 * 11 9 8 35 35 H 1.09000 * 109.87963 * 99.87665 * 11 9 8 36 36 H 0.97005 * 120.00483 * 180.02562 * 16 15 13 37 37 H 1.09004 * 110.36885 * 142.96990 * 21 12 11 38 38 H 1.09007 * 110.36835 * 265.17964 * 21 12 11 39 39 H 1.09000 * 109.47137 * 172.19051 * 24 22 21 40 40 H 1.08991 * 109.47820 * 292.19940 * 24 22 21 41 41 H 1.09005 * 109.47482 * 52.19794 * 24 22 21 42 42 H 1.08005 * 120.01853 * 179.97438 * 25 5 4 43 43 H 1.08004 * 119.90180 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2920 2.3719 0.0005 5 6 1.9295 3.6132 0.0011 6 6 1.1307 4.8567 0.0011 7 8 -0.0835 4.7993 0.0001 8 7 1.7487 6.0546 0.0021 9 6 0.9569 7.2872 0.0016 10 1 0.0603 7.1683 0.6100 11 6 0.5883 7.6987 -1.4394 12 7 0.7047 9.1622 -1.5186 13 6 0.4812 9.9212 -2.6363 14 1 0.5933 10.9945 -2.5915 15 6 0.1107 9.3112 -3.8268 16 7 -0.0253 8.0032 -3.8816 17 14 -0.1934 10.3465 -5.3517 18 1 0.0253 11.7794 -5.0288 19 1 0.7438 9.9320 -6.4264 20 1 -1.5918 10.1511 -5.8119 21 6 1.1010 9.6773 -0.1954 22 6 1.8073 8.4860 0.4987 23 1 2.8411 8.3966 0.1650 24 6 1.7341 8.6165 2.0213 25 6 3.3242 3.6767 0.0016 26 6 4.0669 2.5145 0.0011 27 6 3.4336 1.2837 0.0055 28 17 4.3762 -0.1742 0.0116 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2134 2.3170 0.0005 33 1 2.7176 6.1004 0.0025 34 1 1.2762 7.2334 -2.1453 35 1 -0.4340 7.3933 -1.6621 36 1 -0.2839 7.5768 -4.7137 37 1 1.7896 10.5151 -0.3051 38 1 0.2215 9.9819 0.3721 39 1 2.1125 7.7044 2.4827 40 1 2.3388 9.4643 2.3429 41 1 0.6985 8.7736 2.3231 42 1 3.8214 4.6355 0.0016 43 1 5.1457 2.5649 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080562391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:46 Heat of formation + Delta-G solvation = -24.635290 kcal Electronic energy + Delta-G solvation = -26825.336218 eV Core-core repulsion = 22897.660147 eV Total energy + Delta-G solvation = -3927.676071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67307 -39.47101 -37.85093 -37.27496 -36.46937 -34.02682 -32.72923 -31.26273 -30.50127 -30.38898 -28.09639 -27.28201 -25.66303 -24.37832 -23.25002 -22.51026 -20.88355 -20.12836 -19.76653 -18.55294 -17.01572 -16.80558 -16.48765 -16.42894 -16.08415 -15.74272 -15.00443 -14.51940 -14.46537 -14.14813 -14.03627 -13.74430 -13.39704 -13.19469 -12.86745 -12.75476 -12.70897 -12.13639 -12.03338 -11.74246 -11.72556 -11.66420 -11.37239 -11.31333 -11.05778 -11.04121 -10.80578 -10.65334 -10.40049 -10.00851 -9.93503 -9.77854 -9.66169 -9.17567 -8.65744 -8.58688 -8.45440 -6.84700 -5.70032 -3.05478 0.49541 1.01872 1.89705 2.78968 2.89270 3.31903 3.40215 3.45320 3.48159 3.69046 4.43663 4.48983 4.61456 4.75225 4.78636 4.95255 4.97380 5.04895 5.10043 5.27716 5.30333 5.38811 5.41253 5.53840 5.68088 5.72462 5.82071 5.94606 5.95255 6.01131 6.11352 6.15620 6.23320 6.31468 6.45524 6.59998 6.69711 6.89303 6.92821 7.52452 7.57062 7.79948 7.85059 8.24388 8.43884 9.20709 9.81516 10.45977 11.40605 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.002765 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.584511 B =10123.761439 C =10859.992611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C 0.130 3.870 4 C -0.141 4.141 5 C -0.078 4.078 6 C 0.554 3.446 7 O -0.529 6.529 8 N -0.703 5.703 9 C 0.120 3.880 10 H 0.089 0.911 11 C 0.173 3.827 12 N -0.606 5.606 13 C -0.230 4.230 14 H 0.080 0.920 15 C -0.008 4.008 16 N -0.918 5.918 17 Si 0.912 3.088 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.141 3.859 22 C -0.113 4.113 23 H 0.078 0.922 24 C -0.138 4.138 25 C -0.113 4.113 26 C -0.079 4.079 27 C -0.052 4.052 28 Cl -0.056 7.056 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.152 0.848 33 H 0.396 0.604 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.252 0.748 37 H 0.042 0.958 38 H 0.022 0.978 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.139 0.861 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.222 -13.796 12.137 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.218 6.218 3 C 0.083 3.917 4 C -0.161 4.161 5 C -0.082 4.082 6 C 0.340 3.660 7 O -0.407 6.407 8 N -0.354 5.354 9 C 0.016 3.984 10 H 0.107 0.893 11 C 0.048 3.952 12 N -0.333 5.333 13 C -0.358 4.358 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.565 5.565 17 Si 0.742 3.258 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.014 3.986 22 C -0.133 4.133 23 H 0.096 0.904 24 C -0.196 4.196 25 C -0.132 4.132 26 C -0.098 4.098 27 C -0.080 4.080 28 Cl -0.027 7.027 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.169 0.831 33 H 0.231 0.769 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.157 0.843 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.422 -14.163 11.906 19.936 hybrid contribution 0.149 0.488 -0.989 1.113 sum 7.570 -13.675 10.917 19.066 Atomic orbital electron populations 1.23187 0.77528 1.04358 1.02185 1.86146 1.21965 1.25359 1.88325 1.18532 0.90394 0.85249 0.97478 1.21334 1.01366 0.90085 1.03281 1.19981 0.93595 0.93682 1.00915 1.18051 0.87512 0.83288 0.77145 1.90791 1.13464 1.87111 1.49288 1.45852 1.10014 1.05542 1.73947 1.22556 0.93755 0.81296 1.00831 0.89347 1.21472 1.00890 0.84046 0.88839 1.44415 1.81053 1.02304 1.05505 1.19089 1.40019 0.90141 0.86591 0.90256 1.24832 1.01747 0.95913 0.97943 1.69981 1.53467 1.07378 1.25713 0.86051 0.77535 0.79093 0.83105 1.20497 1.21780 1.21741 1.21591 0.95747 0.93946 0.87291 1.22616 0.99468 0.96395 0.94855 0.90388 1.21705 1.01889 1.01012 0.94965 1.21210 0.92517 0.98657 1.00812 1.20835 1.00792 0.89375 0.98766 1.20361 0.88765 0.88964 1.09909 1.98368 1.71689 1.35735 1.96923 0.87801 0.92130 0.91951 0.83070 0.76927 0.93119 0.93331 0.93775 0.93929 0.95989 0.93080 0.92701 0.92541 0.84331 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.43 9.94 -19.53 -0.19 -3.62 16 3 C 0.13 1.57 6.67 -39.25 -0.26 1.31 16 4 C -0.14 -1.82 8.58 -39.03 -0.33 -2.16 16 5 C -0.08 -1.06 5.87 -104.98 -0.62 -1.67 16 6 C 0.55 9.27 7.77 -12.35 -0.10 9.17 16 7 O -0.53 -10.88 16.07 5.32 0.09 -10.79 16 8 N -0.70 -10.95 5.08 -52.98 -0.27 -11.22 16 9 C 0.12 2.23 2.70 -66.09 -0.18 2.05 16 10 H 0.09 1.74 7.59 -51.93 -0.39 1.35 16 11 C 0.17 4.24 5.12 -3.07 -0.02 4.23 16 12 N -0.61 -15.33 3.39 -170.08 -0.58 -15.91 16 13 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 14 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 15 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 16 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16 17 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 C 0.14 2.79 6.70 -2.53 -0.02 2.78 16 22 C -0.11 -1.81 3.25 -88.47 -0.29 -2.10 16 23 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 24 C -0.14 -1.74 9.31 37.15 0.35 -1.39 16 25 C -0.11 -1.19 9.53 -39.18 -0.37 -1.57 16 26 C -0.08 -0.77 9.80 -39.63 -0.39 -1.16 16 27 C -0.05 -0.59 6.34 -39.25 -0.25 -0.84 16 28 Cl -0.06 -0.59 28.49 -51.86 -1.48 -2.07 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 32 H 0.15 1.94 5.88 -52.49 -0.31 1.63 16 33 H 0.40 4.89 6.55 -40.82 -0.27 4.62 16 34 H 0.05 1.37 7.27 -51.93 -0.38 0.99 16 35 H 0.05 1.39 7.50 -51.93 -0.39 1.00 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 42 H 0.14 1.14 6.40 -52.48 -0.34 0.80 16 43 H 0.15 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -33.66 368.73 -8.84 -42.50 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.78 Total: 2.26 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.73 Total: 2.94 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.27 Total: -53.96 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.11 Total: -14.42 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.66 -8.84 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080562391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.860 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds