Wall clock time and date at job start Tue Mar 31 2020 20:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35935 * 117.00222 * 2 1 4 4 C 1.38416 * 119.98643 * 0.02562 * 3 2 1 5 5 C 1.39542 * 119.80554 * 179.97438 * 4 3 2 6 6 C 1.47801 * 120.10330 * 179.97438 * 5 4 3 7 7 O 1.21555 * 120.00349 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99714 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99672 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.63895 * 36.69176 * 9 8 6 11 11 C 1.54320 * 110.71963 * 273.54723 * 9 8 6 12 12 N 1.47020 * 107.26912 * 219.44497 * 11 9 8 13 13 C 1.36938 * 125.64718 * 178.97852 * 12 11 9 14 14 H 1.08006 * 120.00175 * 179.97438 * 13 12 11 15 15 C 1.38805 * 120.00184 * 359.97438 * 13 12 11 16 16 N 1.31620 * 120.00023 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00328 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46941 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47125 * 119.99959 * 17 15 13 20 20 H 1.48501 * 109.47334 * 239.99886 * 17 15 13 21 21 C 1.47420 * 108.70427 * 358.94372 * 12 11 9 22 22 C 1.54913 * 104.83531 * 24.12664 * 21 12 11 23 23 H 1.08999 * 111.00239 * 81.06115 * 22 21 12 24 24 C 1.52991 * 111.00638 * 204.91586 * 22 21 12 25 25 C 1.39621 * 119.79083 * 359.97438 * 5 4 3 26 26 C 1.37922 * 119.97116 * 0.02562 * 25 5 4 27 27 C 1.38417 * 120.19474 * 359.73667 * 26 25 5 28 28 Cl 1.73603 * 119.89107 * 180.25759 * 27 26 25 29 29 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47220 * 299.99826 * 1 2 3 31 31 H 1.08996 * 109.47672 * 59.99770 * 1 2 3 32 32 H 1.08001 * 120.09674 * 359.97438 * 4 3 2 33 33 H 0.96999 * 119.99849 * 0.02562 * 8 6 5 34 34 H 1.08995 * 109.88751 * 338.86304 * 11 9 8 35 35 H 1.09000 * 109.87963 * 99.87665 * 11 9 8 36 36 H 0.97005 * 120.00483 * 180.02562 * 16 15 13 37 37 H 1.09004 * 110.36885 * 142.96990 * 21 12 11 38 38 H 1.09007 * 110.36835 * 265.17964 * 21 12 11 39 39 H 1.09000 * 109.47137 * 172.19051 * 24 22 21 40 40 H 1.08991 * 109.47820 * 292.19940 * 24 22 21 41 41 H 1.09005 * 109.47482 * 52.19794 * 24 22 21 42 42 H 1.08005 * 120.01853 * 179.97438 * 25 5 4 43 43 H 1.08004 * 119.90180 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2920 2.3719 0.0005 5 6 1.9295 3.6132 0.0011 6 6 1.1307 4.8567 0.0011 7 8 -0.0835 4.7993 0.0001 8 7 1.7487 6.0546 0.0021 9 6 0.9569 7.2872 0.0016 10 1 0.0603 7.1683 0.6100 11 6 0.5883 7.6987 -1.4394 12 7 0.7047 9.1622 -1.5186 13 6 0.4812 9.9212 -2.6363 14 1 0.5933 10.9945 -2.5915 15 6 0.1107 9.3112 -3.8268 16 7 -0.0253 8.0032 -3.8816 17 14 -0.1934 10.3465 -5.3517 18 1 0.0253 11.7794 -5.0288 19 1 0.7438 9.9320 -6.4264 20 1 -1.5918 10.1511 -5.8119 21 6 1.1010 9.6773 -0.1954 22 6 1.8073 8.4860 0.4987 23 1 2.8411 8.3966 0.1650 24 6 1.7341 8.6165 2.0213 25 6 3.3242 3.6767 0.0016 26 6 4.0669 2.5145 0.0011 27 6 3.4336 1.2837 0.0055 28 17 4.3762 -0.1742 0.0116 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2134 2.3170 0.0005 33 1 2.7176 6.1004 0.0025 34 1 1.2762 7.2334 -2.1453 35 1 -0.4340 7.3933 -1.6621 36 1 -0.2839 7.5768 -4.7137 37 1 1.7896 10.5151 -0.3051 38 1 0.2215 9.9819 0.3721 39 1 2.1125 7.7044 2.4827 40 1 2.3388 9.4643 2.3429 41 1 0.6985 8.7736 2.3231 42 1 3.8214 4.6355 0.0016 43 1 5.1457 2.5649 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080562391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:45 Heat of formation + Delta-G solvation = -46.853016 kcal Electronic energy + Delta-G solvation = -26826.299651 eV Core-core repulsion = 22897.660147 eV Total energy + Delta-G solvation = -3928.639504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70272 -40.69708 -39.23167 -38.33990 -37.37660 -35.70823 -34.36614 -32.30894 -32.11535 -31.39662 -29.56376 -28.26492 -27.35310 -25.75231 -24.63487 -23.38056 -22.40378 -21.58980 -21.20732 -19.62378 -18.89410 -17.91593 -17.61507 -17.38651 -17.08933 -16.89457 -16.83063 -15.93810 -15.65757 -15.54659 -15.21108 -14.89668 -14.73030 -14.40662 -14.26672 -14.08950 -13.73940 -13.56093 -13.33008 -13.04824 -12.96518 -12.89337 -12.62031 -12.57944 -12.48997 -12.17802 -12.14150 -12.03235 -11.89570 -11.85956 -11.64520 -11.45857 -11.09893 -10.76383 -10.17902 -9.98692 -9.38220 -8.92739 -7.85071 -5.22856 -0.49118 0.15581 1.03394 1.44434 1.46051 1.56425 1.65444 1.99555 2.16158 2.48971 2.61790 3.33488 3.45397 3.57980 3.67057 3.78019 3.84859 3.96597 4.05153 4.11345 4.21475 4.30815 4.31238 4.47832 4.57592 4.62071 4.68439 4.73329 4.81065 4.89939 4.95742 5.07537 5.08496 5.11055 5.17667 5.30052 5.39349 5.45185 5.51267 5.61503 5.77600 6.08853 6.16437 6.50027 7.05735 7.16587 7.75644 8.39025 9.24124 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.002765 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.584511 B =10123.761439 C =10859.992611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.315 6.315 3 C 0.123 3.877 4 C -0.152 4.152 5 C -0.098 4.098 6 C 0.552 3.448 7 O -0.578 6.578 8 N -0.691 5.691 9 C 0.136 3.864 10 H 0.075 0.925 11 C 0.188 3.812 12 N -0.628 5.628 13 C -0.239 4.239 14 H 0.089 0.911 15 C -0.071 4.071 16 N -0.953 5.953 17 Si 0.979 3.021 18 H -0.260 1.260 19 H -0.291 1.291 20 H -0.297 1.297 21 C 0.131 3.869 22 C -0.092 4.092 23 H 0.096 0.904 24 C -0.130 4.130 25 C -0.101 4.101 26 C -0.068 4.068 27 C -0.057 4.057 28 Cl -0.048 7.048 29 H 0.130 0.870 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.142 0.858 33 H 0.415 0.585 34 H 0.018 0.982 35 H -0.011 1.011 36 H 0.243 0.757 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.167 0.833 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.976 -13.343 13.574 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.228 6.228 3 C 0.076 3.924 4 C -0.172 4.172 5 C -0.101 4.101 6 C 0.340 3.660 7 O -0.459 6.459 8 N -0.342 5.342 9 C 0.030 3.970 10 H 0.093 0.907 11 C 0.062 3.938 12 N -0.354 5.354 13 C -0.368 4.368 14 H 0.107 0.893 15 C -0.263 4.263 16 N -0.602 5.602 17 Si 0.808 3.192 18 H -0.184 1.184 19 H -0.219 1.219 20 H -0.225 1.225 21 C 0.006 3.994 22 C -0.112 4.112 23 H 0.114 0.886 24 C -0.188 4.188 25 C -0.120 4.120 26 C -0.087 4.087 27 C -0.085 4.085 28 Cl -0.019 7.019 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.253 0.747 34 H 0.036 0.964 35 H 0.007 0.993 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.184 0.816 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.228 -13.685 13.388 21.706 hybrid contribution -0.722 0.303 -1.415 1.617 sum 9.506 -13.382 11.972 20.317 Atomic orbital electron populations 1.23397 0.76227 1.06038 1.02093 1.86132 1.23355 1.25034 1.88256 1.18619 0.90938 0.85129 0.97713 1.21300 1.01195 0.90593 1.04102 1.19779 0.94697 0.91972 1.03667 1.18612 0.87219 0.84427 0.75747 1.90763 1.15795 1.87847 1.51508 1.45634 1.10777 1.04361 1.73412 1.22116 0.94729 0.83607 0.96553 0.90711 1.21097 0.96683 0.84021 0.92035 1.44737 1.81007 1.02662 1.07041 1.19547 1.38723 0.90940 0.87550 0.89305 1.25721 1.02416 0.97017 1.01183 1.70245 1.55005 1.09173 1.25759 0.84992 0.76616 0.78484 0.79144 1.18441 1.21851 1.22454 1.21881 0.96466 0.95959 0.85079 1.22546 0.99114 0.92404 0.97128 0.88557 1.21667 1.02313 1.03112 0.91662 1.21478 0.91039 1.00363 0.99119 1.21203 1.02348 0.88192 0.96922 1.20645 0.88635 0.89944 1.09231 1.98373 1.71241 1.35458 1.96821 0.85210 0.91827 0.92518 0.84078 0.74678 0.96397 0.99289 0.94751 0.92481 0.95688 0.91144 0.90211 0.93112 0.81570 0.80245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.31 -6.95 9.94 -92.81 -0.92 -7.87 16 3 C 0.12 2.90 6.67 22.48 0.15 3.05 16 4 C -0.15 -4.02 8.58 22.63 0.19 -3.83 16 5 C -0.10 -2.61 5.87 -20.10 -0.12 -2.73 16 6 C 0.55 18.90 7.77 86.77 0.67 19.57 16 7 O -0.58 -25.25 16.07 -3.89 -0.06 -25.32 16 8 N -0.69 -21.20 5.08 -439.80 -2.23 -23.43 16 9 C 0.14 5.08 2.70 46.18 0.12 5.21 16 10 H 0.07 3.03 7.59 -2.39 -0.02 3.01 16 11 C 0.19 9.67 5.12 86.73 0.44 10.12 16 12 N -0.63 -32.34 3.39 -692.00 -2.35 -34.69 16 13 C -0.24 -13.43 10.28 84.03 0.86 -12.57 16 14 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 15 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 16 N -0.95 -59.68 10.31 21.65 0.22 -59.46 16 17 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 21 C 0.13 5.04 6.70 86.86 0.58 5.62 16 22 C -0.09 -2.74 3.25 -9.40 -0.03 -2.77 16 23 H 0.10 2.56 8.00 -2.39 -0.02 2.54 16 24 C -0.13 -2.80 9.31 71.98 0.67 -2.13 16 25 C -0.10 -1.89 9.53 22.53 0.21 -1.68 16 26 C -0.07 -1.13 9.80 22.24 0.22 -0.91 16 27 C -0.06 -1.17 6.34 22.48 0.14 -1.03 16 28 Cl -0.05 -0.91 28.49 -2.72 -0.08 -0.99 16 29 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 31 H 0.06 0.98 7.66 -2.39 -0.02 0.97 16 32 H 0.14 3.91 5.88 -2.91 -0.02 3.89 16 33 H 0.41 9.31 6.55 -92.71 -0.61 8.70 16 34 H 0.02 1.02 7.27 -2.39 -0.02 1.00 16 35 H -0.01 -0.70 7.50 -2.39 -0.02 -0.71 16 36 H 0.24 14.93 8.31 -92.70 -0.77 14.16 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.03 0.96 7.99 -2.38 -0.02 0.94 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.05 1.17 8.08 -2.38 -0.02 1.15 16 42 H 0.17 2.09 6.40 -2.91 -0.02 2.08 16 43 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -78.54 368.73 2.75 -75.79 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.44 Total: 13.72 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 5.71 Total: 13.66 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -4.36 Total: -117.58 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.99 Total: -33.19 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -78.54 2.75 -75.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080562391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.936 kcal (2) G-P(sol) polarization free energy of solvation -78.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds