Wall clock time and date at job start Tue Mar 31 2020 20:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.47344 * 2 1 4 4 C 1.50703 * 109.47078 * 119.99491 * 2 1 3 5 5 O 1.21286 * 119.99403 * 120.00142 * 4 2 1 6 6 N 1.34768 * 120.00501 * 300.00013 * 4 2 1 7 7 C 1.46500 * 120.00455 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.63458 * 36.69347 * 7 6 4 9 9 C 1.54323 * 110.72058 * 273.55030 * 7 6 4 10 10 N 1.47021 * 107.27226 * 263.64553 * 9 7 6 11 11 C 1.36933 * 125.65074 * 181.02076 * 10 9 7 12 12 H 1.08005 * 119.99933 * 19.60441 * 11 10 9 13 13 C 1.38808 * 120.00365 * 199.60023 * 11 10 9 14 14 N 1.31627 * 119.99820 * 28.57549 * 13 11 10 15 15 Si 1.86799 * 120.00377 * 208.29906 * 13 11 10 16 16 H 1.48493 * 109.47213 * 180.27421 * 15 13 11 17 17 H 1.48503 * 109.46751 * 300.27831 * 15 13 11 18 18 H 1.48506 * 109.47065 * 60.27385 * 15 13 11 19 19 C 1.47431 * 108.70053 * 1.29310 * 10 9 7 20 20 C 1.55130 * 104.72019 * 335.54902 * 19 10 9 21 21 H 1.09004 * 111.22643 * 279.17486 * 20 19 10 22 22 O 1.42896 * 110.90377 * 155.28096 * 20 19 10 23 23 C 1.50701 * 109.47285 * 240.00068 * 2 1 3 24 24 C 1.38265 * 119.99002 * 299.71922 * 23 2 1 25 25 C 1.38212 * 120.02492 * 179.76615 * 24 23 2 26 26 C 1.38234 * 120.01532 * 0.51281 * 25 24 23 27 27 C 1.38329 * 119.98549 * 359.74435 * 26 25 24 28 28 Cl 1.73603 * 120.01722 * 180.02562 * 27 26 25 29 29 C 1.38185 * 119.99393 * 120.00307 * 23 2 1 30 30 H 1.08998 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47323 * 300.00372 * 1 2 3 32 32 H 1.09001 * 109.46917 * 59.99967 * 1 2 3 33 33 H 0.97002 * 120.00243 * 0.02562 * 6 4 2 34 34 H 1.09007 * 109.88115 * 144.23488 * 9 7 6 35 35 H 1.08999 * 110.01102 * 23.14272 * 9 7 6 36 36 H 0.96997 * 119.99651 * 5.39997 * 14 13 11 37 37 H 1.09002 * 110.36646 * 94.47919 * 19 10 9 38 38 H 1.08999 * 110.36470 * 216.80200 * 19 10 9 39 39 H 0.96694 * 114.00517 * 67.96993 * 22 20 19 40 40 H 1.08002 * 119.98368 * 0.02562 * 24 23 2 41 41 H 1.08007 * 119.99415 * 180.25771 * 25 24 23 42 42 H 1.08007 * 120.00982 * 179.76688 * 26 25 24 43 43 H 1.08001 * 120.01234 * 359.95134 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6964 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1946 -0.9407 3.6508 8 1 3.2058 -1.3156 3.4924 9 6 1.2420 -2.0891 4.0448 10 7 0.3373 -1.5697 5.0809 11 6 -0.6474 -2.2827 5.7110 12 1 -0.6185 -3.3623 5.7081 13 6 -1.6827 -1.6179 6.3537 14 7 -2.0640 -0.4305 5.9326 15 14 -2.5401 -2.4117 7.8111 16 1 -3.6064 -1.5072 8.3109 17 1 -3.1427 -3.7015 7.3885 18 1 -1.5525 -2.6576 8.8926 19 6 0.6616 -0.1522 5.3243 20 6 2.1432 -0.0064 4.8884 21 1 2.8202 -0.3539 5.6688 22 8 2.4368 1.3437 4.5236 23 6 2.0323 -0.7104 -1.2305 24 6 1.7030 -2.0358 -1.4462 25 6 2.1593 -2.6866 -2.5768 26 6 2.9541 -2.0158 -3.4874 27 6 3.2883 -0.6913 -3.2695 28 17 4.2859 0.1521 -4.4129 29 6 2.8268 -0.0387 -2.1399 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1488 0.5386 2.5436 34 1 1.8156 -2.9275 4.4401 35 1 0.6661 -2.4104 3.1770 36 1 -1.6761 -0.0540 5.1272 37 1 0.0213 0.4923 4.7219 38 1 0.5527 0.0855 6.3824 39 1 2.4165 1.9647 5.2645 40 1 1.0854 -2.5615 -0.7329 41 1 1.8983 -3.7208 -2.7469 42 1 3.3138 -2.5256 -4.3691 43 1 3.0872 0.9955 -1.9695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084075821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:11 Heat of formation + Delta-G solvation = -46.462810 kcal Electronic energy + Delta-G solvation = -27145.778695 eV Core-core repulsion = 23217.156112 eV Total energy + Delta-G solvation = -3928.622583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.42874 -39.19880 -37.94617 -36.63602 -35.35512 -34.26270 -33.87978 -31.76919 -30.95195 -29.61121 -28.29738 -27.39622 -24.91434 -24.23708 -22.85166 -22.33561 -20.61663 -20.29302 -19.76572 -17.70275 -17.31553 -17.22413 -16.79452 -15.97208 -15.60207 -15.36899 -14.84676 -14.69784 -14.22593 -14.02605 -13.79221 -13.65012 -13.60090 -13.47143 -12.99634 -12.72852 -12.56487 -12.43817 -12.31324 -11.95368 -11.69759 -11.59541 -11.43506 -11.32764 -11.26576 -10.93339 -10.83018 -10.66598 -10.45620 -10.08636 -9.85921 -9.62852 -9.45138 -9.04210 -8.77933 -8.73225 -8.48606 -7.04700 -6.20601 -3.26910 1.04057 1.10723 1.93949 2.81303 3.25112 3.44852 3.47967 3.61768 3.66014 4.24424 4.33877 4.53751 4.60655 4.80379 4.93038 4.98463 5.01439 5.08177 5.14889 5.22586 5.27114 5.27972 5.49273 5.52048 5.55522 5.61359 5.68636 5.75802 5.92994 5.96886 6.00474 6.05266 6.22592 6.33537 6.39413 6.54333 6.62813 6.64890 6.77811 6.89929 7.67869 7.77322 7.80989 8.38501 8.44024 8.90300 9.70108 10.23609 11.11669 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021129 B = 0.002548 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.878613 B =10988.246774 C =11524.279968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 H 0.105 0.895 4 C 0.518 3.482 5 O -0.540 6.540 6 N -0.697 5.697 7 C 0.146 3.854 8 H 0.093 0.907 9 C 0.126 3.874 10 N -0.597 5.597 11 C -0.338 4.338 12 H 0.065 0.935 13 C -0.023 4.023 14 N -0.912 5.912 15 Si 1.064 2.936 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.293 1.293 19 C 0.118 3.882 20 C 0.074 3.926 21 H 0.076 0.924 22 O -0.563 6.563 23 C -0.049 4.049 24 C -0.076 4.076 25 C -0.109 4.109 26 C -0.112 4.112 27 C -0.038 4.038 28 Cl -0.078 7.078 29 C -0.103 4.103 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.405 0.595 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.267 0.733 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.379 0.621 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.100 3.466 -15.294 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 H 0.123 0.877 4 C 0.304 3.696 5 O -0.417 6.417 6 N -0.348 5.348 7 C 0.040 3.960 8 H 0.111 0.889 9 C -0.001 4.001 10 N -0.325 5.325 11 C -0.466 4.466 12 H 0.083 0.917 13 C -0.225 4.225 14 N -0.553 5.553 15 Si 0.894 3.106 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.220 1.220 19 C -0.008 4.008 20 C 0.013 3.987 21 H 0.094 0.906 22 O -0.367 6.367 23 C -0.050 4.050 24 C -0.094 4.094 25 C -0.127 4.127 26 C -0.131 4.131 27 C -0.064 4.064 28 Cl -0.049 7.049 29 C -0.122 4.122 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.240 0.760 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.226 0.774 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.521 2.733 -14.832 17.323 hybrid contribution 0.935 0.366 -0.633 1.187 sum 9.456 3.099 -15.466 18.391 Atomic orbital electron populations 1.21812 0.91432 1.03501 1.03212 1.20296 0.98108 1.00255 0.90601 0.87653 1.20290 0.80303 0.84679 0.84362 1.90704 1.38141 1.26209 1.86663 1.45643 1.52823 1.31724 1.04586 1.21968 0.98335 0.92428 0.83224 0.88934 1.21792 0.91844 0.94053 0.92377 1.44383 1.38037 1.07717 1.42376 1.19721 1.02952 0.91213 1.32708 0.91676 1.25798 0.94876 0.98060 1.03812 1.70817 1.39964 1.19857 1.24641 0.83530 0.75941 0.74979 0.76182 1.21060 1.21906 1.22040 1.22197 0.90901 0.88067 0.99618 1.23485 0.97800 0.81774 0.95621 0.90638 1.86376 1.93414 1.18096 1.38830 1.19270 0.97042 0.94279 0.94414 1.21092 0.98338 0.93704 0.96316 1.21090 0.97565 1.00124 0.93937 1.21020 0.99022 0.92648 1.00428 1.20793 0.98917 0.93565 0.93152 1.98359 1.68560 1.77994 1.60017 1.20872 0.97889 1.00417 0.93036 0.91595 0.91118 0.91195 0.75999 0.94515 0.94828 0.92145 0.94742 0.92892 0.77362 0.85409 0.85070 0.85184 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.90 37.16 0.33 -1.22 16 2 C -0.07 -0.85 2.90 -92.92 -0.27 -1.12 16 3 H 0.11 1.04 7.88 -51.92 -0.41 0.64 16 4 C 0.52 8.04 7.02 -10.99 -0.08 7.96 16 5 O -0.54 -10.04 14.81 5.55 0.08 -9.96 16 6 N -0.70 -11.02 4.68 -52.03 -0.24 -11.26 16 7 C 0.15 2.57 3.13 -66.10 -0.21 2.36 16 8 H 0.09 1.63 7.69 -51.93 -0.40 1.23 16 9 C 0.13 2.64 6.98 -3.07 -0.02 2.62 16 10 N -0.60 -14.45 3.26 -169.93 -0.55 -15.01 16 11 C -0.34 -9.28 10.00 -15.06 -0.15 -9.43 16 12 H 0.07 1.81 7.97 -52.48 -0.42 1.39 16 13 C -0.02 -0.64 5.09 -17.43 -0.09 -0.73 16 14 N -0.91 -26.38 13.02 55.49 0.72 -25.66 16 15 Si 1.06 24.61 30.00 -169.99 -5.10 19.51 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.12 2.51 5.10 -2.41 -0.01 2.50 16 20 C 0.07 1.23 4.23 -24.47 -0.10 1.13 16 21 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 22 O -0.56 -8.00 12.64 -35.23 -0.45 -8.45 16 23 C -0.05 -0.60 4.40 -104.63 -0.46 -1.06 16 24 C -0.08 -0.95 7.92 -39.58 -0.31 -1.26 16 25 C -0.11 -1.17 10.04 -39.59 -0.40 -1.57 16 26 C -0.11 -1.17 9.83 -39.55 -0.39 -1.56 16 27 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 28 Cl -0.08 -0.79 28.96 -51.86 -1.50 -2.29 16 29 C -0.10 -1.17 9.46 -39.55 -0.37 -1.54 16 30 H 0.06 0.78 7.40 -51.93 -0.38 0.40 16 31 H 0.07 0.79 7.56 -51.92 -0.39 0.39 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.40 6.05 7.63 -40.82 -0.31 5.74 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.27 7.70 6.18 -40.82 -0.25 7.45 16 37 H 0.03 0.78 6.81 -51.93 -0.35 0.43 16 38 H 0.05 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.38 3.92 9.12 45.56 0.42 4.33 16 40 H 0.13 1.65 7.52 -52.49 -0.39 1.26 16 41 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.13 1.27 7.95 -52.49 -0.42 0.85 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -32.41 370.39 -9.31 -41.71 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.06 Total: 9.41 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.78 Total: -3.59 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.08 Total: -51.93 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.36 Total: -18.41 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.10 Total: 19.51 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.41 -9.31 -41.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084075821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.750 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds