Wall clock time and date at job start Tue Mar 31 2020 20:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35654 * 117.00243 * 2 1 4 4 C 1.38644 * 120.14249 * 0.25708 * 3 2 1 5 5 C 1.38207 * 120.06899 * 180.27892 * 4 3 2 6 6 Cl 1.73603 * 119.81729 * 179.76528 * 5 4 3 7 7 C 1.38705 * 120.36495 * 359.73719 * 5 4 3 8 8 C 1.37730 * 120.28216 * 359.97438 * 7 5 4 9 9 C 1.39747 * 119.92384 * 0.02562 * 8 7 5 10 10 C 1.47473 * 120.17827 * 179.97438 * 9 8 7 11 11 O 1.21593 * 119.99878 * 179.97438 * 10 9 8 12 12 N 1.34780 * 120.00011 * 359.97438 * 10 9 8 13 13 C 1.46499 * 120.00006 * 180.02562 * 12 10 9 14 14 H 1.09003 * 110.64243 * 328.14342 * 13 12 10 15 15 C 1.55156 * 110.72073 * 91.47935 * 13 12 10 16 16 C 1.54690 * 101.67687 * 153.69735 * 15 13 12 17 17 N 1.47417 * 104.94416 * 323.27618 * 16 15 13 18 18 C 1.36936 * 125.65090 * 204.07420 * 17 16 15 19 19 H 1.07995 * 119.99950 * 162.77811 * 18 17 16 20 20 C 1.38807 * 119.99818 * 342.77693 * 18 17 16 21 21 N 1.31620 * 120.00127 * 332.47990 * 20 18 17 22 22 Si 1.86794 * 119.99999 * 152.47562 * 20 18 17 23 23 H 1.48502 * 109.47291 * 270.00387 * 22 20 18 24 24 H 1.48504 * 109.47132 * 30.00203 * 22 20 18 25 25 H 1.48500 * 109.47362 * 150.00015 * 22 20 18 26 26 C 1.47029 * 108.70278 * 23.80762 * 17 16 15 27 27 H 1.08991 * 109.88584 * 239.75334 * 26 17 16 28 28 C 1.52994 * 109.88057 * 118.73903 * 26 17 16 29 29 H 1.09003 * 109.46956 * 59.99896 * 1 2 3 30 30 H 1.09000 * 109.47796 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47008 * 300.00287 * 1 2 3 32 32 H 1.08000 * 119.96745 * 359.97438 * 4 3 2 33 33 H 1.07988 * 119.85685 * 180.02562 * 7 5 4 34 34 H 1.08002 * 120.03870 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00022 * 359.97438 * 12 10 9 36 36 H 1.09001 * 111.00181 * 271.93923 * 15 13 12 37 37 H 1.08997 * 111.00468 * 35.78602 * 15 13 12 38 38 H 1.09001 * 110.38924 * 204.36196 * 16 15 13 39 39 H 1.08997 * 110.23111 * 82.11336 * 16 15 13 40 40 H 0.97003 * 120.00028 * 353.98686 * 21 20 18 41 41 H 1.08997 * 109.47546 * 61.45467 * 28 26 17 42 42 H 1.08999 * 109.47022 * 181.45484 * 28 26 17 43 43 H 1.08999 * 109.47407 * 301.45636 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2928 2.3733 0.0054 5 6 1.9218 3.6039 -0.0005 6 17 0.9736 5.0581 0.0002 7 6 3.3065 3.6835 -0.0062 8 6 4.0682 2.5360 -0.0056 9 6 3.4446 1.2854 0.0002 10 6 4.2546 0.0530 0.0003 11 8 3.7086 -1.0334 0.0059 12 7 5.6001 0.1310 -0.0058 13 6 6.4048 -1.0932 -0.0063 14 1 5.8943 -1.8888 0.5363 15 6 6.7313 -1.5349 -1.4574 16 6 8.0474 -2.3225 -1.2563 17 7 8.7726 -1.5884 -0.2035 18 6 10.1277 -1.6060 -0.0071 19 1 10.5962 -0.8404 0.5935 20 6 10.8991 -2.6077 -0.5801 21 7 10.3679 -3.7857 -0.8300 22 14 12.6910 -2.2838 -0.9965 23 1 12.7901 -1.7580 -2.3818 24 1 13.2473 -1.2862 -0.0475 25 1 13.4603 -3.5496 -0.8913 26 6 7.8006 -0.8293 0.5969 27 1 8.0305 0.2350 0.5477 28 6 7.8406 -1.3034 2.0510 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2141 2.3189 0.0092 33 1 3.7895 4.6494 -0.0103 34 1 5.1461 2.6025 -0.0106 35 1 6.0357 0.9977 -0.0106 36 1 5.9463 -2.1776 -1.8560 37 1 6.8915 -0.6709 -2.1022 38 1 8.6277 -2.3343 -2.1789 39 1 7.8318 -3.3398 -0.9297 40 1 9.4650 -3.9830 -0.5354 41 1 8.8330 -1.1238 2.4646 42 1 7.0999 -0.7546 2.6326 43 1 7.6175 -2.3695 2.0918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088824245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:41 Heat of formation + Delta-G solvation = -46.807632 kcal Electronic energy + Delta-G solvation = -26902.684920 eV Core-core repulsion = 22974.047384 eV Total energy + Delta-G solvation = -3928.637536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78891 -40.57893 -39.18270 -38.70482 -37.35920 -35.77399 -34.03419 -32.36676 -32.15208 -31.36539 -30.21431 -28.28500 -26.77960 -25.71936 -24.78045 -23.36287 -22.27654 -21.68956 -21.46870 -19.62353 -19.26318 -18.33895 -17.86009 -17.14652 -16.90658 -16.41868 -16.22142 -15.98713 -15.89395 -15.64933 -15.34877 -15.01457 -14.83077 -14.65310 -14.44339 -14.31971 -13.63263 -13.50984 -13.43157 -13.04778 -12.96833 -12.84543 -12.58585 -12.49941 -12.40351 -12.21976 -12.13807 -12.04847 -11.86868 -11.85749 -11.68307 -11.51975 -10.97296 -10.50815 -10.18814 -10.00770 -9.39590 -9.01061 -8.27529 -5.30431 -0.45577 0.18853 0.92065 1.60446 1.68361 1.70884 1.85036 2.00668 2.22348 2.62353 2.68170 3.22594 3.41127 3.57540 3.67108 3.73796 3.77976 3.86382 3.95855 4.10864 4.23002 4.29779 4.33268 4.33560 4.43190 4.49333 4.50343 4.67928 4.71202 4.78388 4.85820 4.92820 5.01922 5.02822 5.04690 5.07376 5.21690 5.31031 5.41147 5.53168 5.73386 6.23496 6.34055 6.53614 6.91899 7.21673 7.73062 8.31294 9.04592 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.002449 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.375737 B =11428.556940 C =12254.360406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.308 6.308 3 C 0.183 3.817 4 C -0.212 4.212 5 C 0.028 3.972 6 Cl -0.050 7.050 7 C -0.153 4.153 8 C -0.025 4.025 9 C -0.189 4.189 10 C 0.559 3.441 11 O -0.562 6.562 12 N -0.701 5.701 13 C 0.155 3.845 14 H 0.079 0.921 15 C -0.129 4.129 16 C 0.151 3.849 17 N -0.613 5.613 18 C -0.331 4.331 19 H 0.066 0.934 20 C -0.083 4.083 21 N -0.951 5.951 22 Si 1.118 2.882 23 H -0.286 1.286 24 H -0.269 1.269 25 H -0.299 1.299 26 C 0.151 3.849 27 H 0.058 0.942 28 C -0.144 4.144 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.412 0.588 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.026 0.974 39 H 0.001 0.999 40 H 0.255 0.745 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.454 19.673 1.966 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.219 6.219 3 C 0.134 3.866 4 C -0.231 4.231 5 C 0.000 4.000 6 Cl -0.021 7.021 7 C -0.171 4.171 8 C -0.044 4.044 9 C -0.193 4.193 10 C 0.348 3.652 11 O -0.442 6.442 12 N -0.353 5.353 13 C 0.049 3.951 14 H 0.097 0.903 15 C -0.169 4.169 16 C 0.024 3.976 17 N -0.339 5.339 18 C -0.459 4.459 19 H 0.084 0.916 20 C -0.278 4.278 21 N -0.594 5.594 22 Si 0.943 3.057 23 H -0.213 1.213 24 H -0.194 1.194 25 H -0.225 1.225 26 C 0.045 3.955 27 H 0.076 0.924 28 C -0.203 4.203 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.185 0.815 35 H 0.251 0.749 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.044 0.956 39 H 0.019 0.981 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -20.403 18.201 1.312 27.373 hybrid contribution -1.402 0.455 0.765 1.661 sum -21.805 18.656 2.077 28.772 Atomic orbital electron populations 1.23493 0.76376 1.05737 1.02844 1.86394 1.23379 1.25687 1.86471 1.19071 0.90959 0.85118 0.91441 1.21196 1.01857 0.89641 1.10429 1.21031 0.92534 0.87574 0.98833 1.98403 1.72151 1.35180 1.96363 1.21187 0.91061 1.00532 1.04358 1.21409 1.01542 0.89005 0.92413 1.19470 0.91032 0.94098 1.14697 1.18311 0.82071 0.88954 0.75907 1.90807 1.72255 1.30452 1.50653 1.45685 1.05269 1.09493 1.74902 1.21654 0.90320 0.87233 0.95874 0.90330 1.23024 0.96356 1.00517 0.96957 1.21314 0.91399 0.93427 0.91416 1.44803 1.02381 1.55139 1.31606 1.19973 0.81959 1.09516 1.34465 0.91586 1.27111 1.08754 0.91396 1.00559 1.70861 1.17310 1.20616 1.50632 0.82797 0.70874 0.75108 0.76878 1.21251 1.19379 1.22546 1.21246 0.87468 0.96094 0.90734 0.92429 1.22080 1.00999 0.99941 0.97318 0.90821 0.87039 0.90789 0.81907 0.81437 0.81492 0.74913 0.90998 0.89986 0.95592 0.98106 0.93500 0.93776 0.91037 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.31 -7.74 8.57 -68.76 -0.59 -8.33 16 3 C 0.18 4.08 6.70 22.84 0.15 4.23 16 4 C -0.21 -3.39 8.80 22.36 0.20 -3.20 16 5 C 0.03 0.40 6.32 22.37 0.14 0.54 16 6 Cl -0.05 -0.62 28.94 -2.72 -0.08 -0.70 16 7 C -0.15 -1.95 9.80 22.26 0.22 -1.73 16 8 C -0.03 -0.38 9.53 22.51 0.21 -0.17 16 9 C -0.19 -4.35 5.89 -20.01 -0.12 -4.47 16 10 C 0.56 16.77 7.76 86.68 0.67 17.44 16 11 O -0.56 -21.80 14.80 16.92 0.25 -21.55 16 12 N -0.70 -19.13 5.13 -440.13 -2.26 -21.38 16 13 C 0.16 5.47 2.85 46.18 0.13 5.60 16 14 H 0.08 3.12 7.26 -2.39 -0.02 3.10 16 15 C -0.13 -4.88 6.76 31.91 0.22 -4.67 16 16 C 0.15 7.27 5.29 86.78 0.46 7.73 16 17 N -0.61 -30.44 3.02 -668.72 -2.02 -32.46 16 18 C -0.33 -18.25 9.62 84.03 0.81 -17.44 16 19 H 0.07 3.58 7.96 -2.91 -0.02 3.55 16 20 C -0.08 -4.73 5.09 84.86 0.43 -4.30 16 21 N -0.95 -59.28 12.94 21.65 0.28 -59.00 16 22 Si 1.12 51.16 30.00 68.60 2.06 53.22 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 C 0.15 5.89 3.48 45.34 0.16 6.04 16 27 H 0.06 2.04 7.72 -2.39 -0.02 2.03 16 28 C -0.14 -5.47 9.15 71.98 0.66 -4.81 16 29 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 30 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 32 H 0.16 1.86 6.30 -2.91 -0.02 1.84 16 33 H 0.17 1.27 8.06 -2.92 -0.02 1.25 16 34 H 0.17 1.65 6.40 -2.91 -0.02 1.63 16 35 H 0.41 8.40 6.40 -92.71 -0.59 7.81 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.08 2.84 8.14 -2.39 -0.02 2.83 16 38 H 0.03 1.37 7.96 -2.39 -0.02 1.35 16 39 H 0.00 0.06 6.80 -2.39 -0.02 0.05 16 40 H 0.25 16.21 6.02 -92.71 -0.56 15.66 16 41 H 0.04 1.76 8.02 -2.39 -0.02 1.74 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -75.78 366.49 3.76 -72.03 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.66 Total: 16.11 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.45 Total: 2.06 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -4.00 Total: -112.84 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.34 Total: -29.88 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.06 Total: 53.22 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -75.78 3.76 -72.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088824245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.219 kcal (2) G-P(sol) polarization free energy of solvation -75.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds