Wall clock time and date at job start Tue Mar 31 2020 20:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35709 * 116.99662 * 2 1 4 4 C 1.39062 * 119.90035 * 180.02562 * 3 2 1 5 5 C 1.37647 * 120.12998 * 180.02562 * 4 3 2 6 6 C 1.39775 * 119.92007 * 0.02562 * 5 4 3 7 7 C 1.47531 * 120.10027 * 180.02562 * 6 5 4 8 8 O 1.21588 * 120.00074 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99561 * 359.97424 * 7 6 5 10 10 C 1.46497 * 119.99898 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.64132 * 328.14040 * 10 9 7 12 12 C 1.55155 * 110.72125 * 91.47465 * 10 9 7 13 13 C 1.54913 * 101.57891 * 153.86596 * 12 10 9 14 14 N 1.47418 * 104.83337 * 322.99089 * 13 12 10 15 15 C 1.36939 * 125.64690 * 204.16168 * 14 13 12 16 16 H 1.08008 * 119.99731 * 179.97438 * 15 14 13 17 17 C 1.38814 * 120.00444 * 359.96321 * 15 14 13 18 18 N 1.31620 * 119.99296 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00393 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46906 * 90.00107 * 19 17 15 21 21 H 1.48497 * 109.47620 * 209.99768 * 19 17 15 22 22 H 1.48503 * 109.47368 * 330.00229 * 19 17 15 23 23 C 1.47025 * 108.70431 * 24.13131 * 14 13 12 24 24 H 1.09004 * 109.87599 * 239.52210 * 23 14 13 25 25 C 1.52998 * 110.01049 * 118.43138 * 23 14 13 26 26 C 1.39865 * 119.80502 * 359.97438 * 6 5 4 27 27 Cl 1.73599 * 120.06305 * 179.97438 * 26 6 5 28 28 C 1.37896 * 119.87154 * 0.26110 * 26 6 5 29 29 H 1.09001 * 109.46878 * 300.00024 * 1 2 3 30 30 H 1.08998 * 109.46920 * 60.00136 * 1 2 3 31 31 H 1.09004 * 109.46749 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.93643 * 0.04114 * 4 3 2 33 33 H 1.07995 * 120.03984 * 179.97438 * 5 4 3 34 34 H 0.97004 * 120.00227 * 0.02562 * 9 7 6 35 35 H 1.08998 * 111.00523 * 271.93427 * 12 10 9 36 36 H 1.08997 * 111.00316 * 35.79670 * 12 10 9 37 37 H 1.09000 * 110.36594 * 204.15124 * 13 12 10 38 38 H 1.09005 * 110.45818 * 81.88222 * 13 12 10 39 39 H 0.97001 * 119.99477 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47028 * 302.10740 * 25 23 14 41 41 H 1.09000 * 109.47466 * 62.11564 * 25 23 14 42 42 H 1.09000 * 109.46500 * 182.11699 * 25 23 14 43 43 H 1.07995 * 119.96354 * 179.74564 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4339 1.2797 -0.0005 5 6 4.0637 2.5036 0.0000 6 6 3.3054 3.6778 0.0016 7 6 3.9762 4.9918 0.0016 8 8 3.3148 6.0121 0.0026 9 7 5.3222 5.0611 0.0006 10 6 5.9884 6.3659 0.0011 11 1 5.3911 7.1025 -0.5362 12 6 6.2725 6.8366 1.4520 13 6 7.4926 7.7680 1.2434 14 7 8.2889 7.1162 0.1878 15 6 9.6329 7.2823 -0.0154 16 1 10.1263 6.7572 -0.8200 17 6 10.3611 8.1257 0.8124 18 7 9.7596 8.7661 1.7924 19 14 12.1946 8.3516 0.5356 20 1 12.4182 9.4836 -0.3992 21 1 12.8589 8.6415 1.8317 22 1 12.7643 7.1096 -0.0457 23 6 7.4012 6.2578 -0.6102 24 1 7.7464 5.2248 -0.5657 25 6 7.3776 6.7362 -2.0632 26 6 1.9087 3.6034 0.0022 27 17 0.9604 5.0575 0.0048 28 6 1.2865 2.3729 0.0065 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0196 0.3723 -0.0016 33 1 5.1423 2.5566 0.0000 34 1 5.8498 4.2472 -0.0005 35 1 5.4243 7.3886 1.8568 36 1 6.5298 5.9934 2.0930 37 1 8.0726 7.8451 2.1631 38 1 7.1666 8.7558 0.9175 39 1 10.2684 9.3557 2.3707 40 1 7.0490 7.7749 -2.0984 41 1 8.3783 6.6571 -2.4882 42 1 6.6887 6.1175 -2.6382 43 1 0.2082 2.3137 0.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088927321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:31 Heat of formation + Delta-G solvation = -34.520529 kcal Electronic energy + Delta-G solvation = -26724.562055 eV Core-core repulsion = 22796.457328 eV Total energy + Delta-G solvation = -3928.104727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60128 -40.70872 -39.30607 -38.18774 -37.28542 -35.59074 -33.89723 -32.12149 -32.02359 -31.65418 -30.21527 -28.35725 -26.60646 -25.82464 -24.29678 -23.67540 -22.18100 -21.55565 -21.32009 -19.51112 -18.73590 -18.54406 -17.66035 -17.15922 -16.80742 -16.54729 -16.18359 -15.95036 -15.74965 -15.68319 -15.20653 -14.88736 -14.73053 -14.36822 -14.12996 -14.00479 -13.84591 -13.61220 -13.22482 -12.99316 -12.90925 -12.82959 -12.74054 -12.59805 -12.30792 -12.18440 -12.10536 -11.98908 -11.94290 -11.82923 -11.55417 -11.40940 -10.71839 -10.58763 -10.05103 -10.01508 -9.37435 -8.87708 -7.72584 -5.17526 -0.30616 0.04938 1.07710 1.49765 1.51311 1.59709 1.79977 2.08667 2.20230 2.53969 2.65268 3.37860 3.55484 3.58722 3.76487 3.79960 3.88389 3.98981 4.05745 4.23733 4.28073 4.37929 4.38694 4.49348 4.52445 4.64744 4.69118 4.75043 4.82863 4.90296 4.98593 5.01188 5.07448 5.08360 5.15441 5.37241 5.39446 5.52628 5.62509 5.65037 5.82609 6.20139 6.32802 6.57782 7.13330 7.25835 7.81265 8.44981 9.29328 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022355 B = 0.002497 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.206058 B =11212.049331 C =11879.962743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.315 6.315 3 C 0.167 3.833 4 C -0.153 4.153 5 C -0.025 4.025 6 C -0.185 4.185 7 C 0.554 3.446 8 O -0.558 6.558 9 N -0.700 5.700 10 C 0.155 3.845 11 H 0.080 0.920 12 C -0.138 4.138 13 C 0.158 3.842 14 N -0.613 5.613 15 C -0.224 4.224 16 H 0.086 0.914 17 C -0.071 4.071 18 N -0.952 5.952 19 Si 0.978 3.022 20 H -0.291 1.291 21 H -0.297 1.297 22 H -0.266 1.266 23 C 0.151 3.849 24 H 0.055 0.945 25 C -0.147 4.147 26 C 0.040 3.960 27 Cl -0.047 7.047 28 C -0.214 4.214 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.126 0.874 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.077 0.923 38 H -0.017 1.017 39 H 0.245 0.755 40 H 0.033 0.967 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.967 -21.181 -4.411 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.228 6.228 3 C 0.120 3.880 4 C -0.171 4.171 5 C -0.044 4.044 6 C -0.189 4.189 7 C 0.342 3.658 8 O -0.437 6.437 9 N -0.352 5.352 10 C 0.049 3.951 11 H 0.098 0.902 12 C -0.177 4.177 13 C 0.032 3.968 14 N -0.338 5.338 15 C -0.353 4.353 16 H 0.104 0.896 17 C -0.263 4.263 18 N -0.602 5.602 19 Si 0.807 3.193 20 H -0.219 1.219 21 H -0.224 1.224 22 H -0.190 1.190 23 C 0.044 3.956 24 H 0.073 0.927 25 C -0.206 4.206 26 C 0.011 3.989 27 Cl -0.018 7.018 28 C -0.233 4.233 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.186 0.814 33 H 0.185 0.815 34 H 0.249 0.751 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.001 0.999 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.267 -20.429 -4.339 28.414 hybrid contribution 0.817 0.893 0.071 1.212 sum -18.449 -19.536 -4.269 27.208 Atomic orbital electron populations 1.23498 0.75899 1.06268 1.02645 1.86083 1.23884 1.25538 1.87285 1.19258 0.92639 0.84082 0.92051 1.20766 0.91347 0.99523 1.05500 1.21362 1.01132 0.89393 0.92511 1.19655 0.92438 0.93937 1.12905 1.18339 0.82224 0.89027 0.76195 1.90849 1.64895 1.37339 1.50584 1.45715 1.05845 1.09065 1.74602 1.21699 0.92312 0.84942 0.96098 0.90184 1.23190 0.98068 0.99967 0.96510 1.21663 0.89681 0.91181 0.94280 1.44721 1.04154 1.51484 1.33465 1.19400 0.83158 1.21404 1.11344 0.89579 1.25617 1.02408 0.99830 0.98432 1.70052 1.35136 1.33738 1.21250 0.85074 0.79925 0.78021 0.76292 1.21887 1.22357 1.19031 1.21201 0.88448 0.94862 0.91072 0.92716 1.22125 1.01217 1.00310 0.96956 1.20898 0.90883 0.88678 0.98397 1.98420 1.71105 1.36227 1.96022 1.21211 1.02008 0.89557 1.10513 0.91445 0.91369 0.85584 0.81378 0.81517 0.75086 0.91817 0.90999 0.90462 0.99891 0.94517 0.94754 0.93270 0.91166 0.82104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.04 10.48 -90.30 -0.95 -4.99 16 3 C 0.17 2.53 6.69 22.63 0.15 2.69 16 4 C -0.15 -2.10 9.97 22.33 0.22 -1.88 16 5 C -0.03 -0.40 9.53 22.50 0.21 -0.19 16 6 C -0.19 -4.32 5.88 -20.06 -0.12 -4.44 16 7 C 0.55 16.48 7.76 86.69 0.67 17.15 16 8 O -0.56 -20.75 13.60 -3.99 -0.05 -20.80 16 9 N -0.70 -19.36 5.13 -440.09 -2.26 -21.61 16 10 C 0.16 5.53 2.84 46.18 0.13 5.66 16 11 H 0.08 3.15 7.25 -2.39 -0.02 3.14 16 12 C -0.14 -5.49 6.77 31.99 0.22 -5.27 16 13 C 0.16 7.93 5.89 86.86 0.51 8.44 16 14 N -0.61 -30.47 3.13 -668.25 -2.09 -32.56 16 15 C -0.22 -12.09 9.90 84.03 0.83 -11.26 16 16 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 17 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 18 N -0.95 -56.75 10.09 21.65 0.22 -56.54 16 19 Si 0.98 45.20 29.55 68.60 2.03 47.22 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 23 C 0.15 5.81 3.47 45.34 0.16 5.97 16 24 H 0.06 1.93 7.72 -2.38 -0.02 1.91 16 25 C -0.15 -5.25 9.14 71.98 0.66 -4.59 16 26 C 0.04 0.91 6.35 22.58 0.14 1.06 16 27 Cl -0.05 -1.26 26.01 -2.72 -0.07 -1.33 16 28 C -0.21 -3.61 8.80 22.35 0.20 -3.42 16 29 H 0.07 0.33 7.64 -2.39 -0.02 0.31 16 30 H 0.07 0.32 7.66 -2.39 -0.02 0.31 16 31 H 0.13 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.17 1.78 6.39 -2.91 -0.02 1.76 16 34 H 0.41 8.64 6.39 -92.71 -0.59 8.05 16 35 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.08 4.40 5.87 -2.39 -0.01 4.38 16 38 H -0.02 -0.94 8.14 -2.38 -0.02 -0.95 16 39 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.79 8.05 -2.39 -0.02 1.77 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.16 2.00 6.27 -2.91 -0.02 1.98 16 Total: -1.00 -71.82 363.88 2.85 -68.97 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.45 Total: 14.04 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.57 Total: 7.60 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -4.13 Total: -110.71 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.00 Total: -25.79 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -71.82 2.85 -68.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088927321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.451 kcal (2) G-P(sol) polarization free energy of solvation -71.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds