Wall clock time and date at job start Tue Mar 31 2020 20:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35668 * 117.00050 * 2 1 4 4 C 1.38696 * 120.14075 * 359.97438 * 3 2 1 5 5 C 1.38048 * 120.10127 * 180.02562 * 4 3 2 6 6 C 1.38647 * 120.37996 * 359.95323 * 5 4 3 7 7 Cl 1.73597 * 119.86542 * 179.97438 * 6 5 4 8 8 C 1.37900 * 120.27113 * 359.76614 * 6 5 4 9 9 C 1.39710 * 119.89152 * 0.53495 * 8 6 5 10 10 C 1.47530 * 120.18596 * 179.72414 * 9 8 6 11 11 O 1.21589 * 120.00150 * 179.72405 * 10 9 8 12 12 N 1.34779 * 119.99764 * 359.72040 * 10 9 8 13 13 C 1.46498 * 119.99910 * 180.02562 * 12 10 9 14 14 H 1.09005 * 110.78011 * 323.21238 * 13 12 10 15 15 C 1.55158 * 110.72351 * 86.45393 * 13 12 10 16 16 C 1.54909 * 101.61642 * 153.88368 * 15 13 12 17 17 N 1.47427 * 104.83281 * 322.96922 * 16 15 13 18 18 C 1.36930 * 125.64624 * 204.16403 * 17 16 15 19 19 H 1.08002 * 119.99784 * 179.97438 * 18 17 16 20 20 C 1.38820 * 120.00266 * 359.97438 * 18 17 16 21 21 N 1.31614 * 119.99878 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99929 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47699 * 89.99771 * 22 20 18 24 24 H 1.48506 * 109.46953 * 209.99990 * 22 20 18 25 25 H 1.48506 * 109.47233 * 329.99514 * 22 20 18 26 26 C 1.47014 * 108.70101 * 24.13279 * 17 16 15 27 27 H 1.09004 * 109.88272 * 239.36515 * 26 17 16 28 28 C 1.53006 * 109.88374 * 118.35608 * 26 17 16 29 29 H 1.08993 * 109.47139 * 60.00081 * 1 2 3 30 30 H 1.09006 * 109.46999 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46828 * 299.99443 * 1 2 3 32 32 H 1.07998 * 119.94643 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.81336 * 179.97438 * 5 4 3 34 34 H 1.07996 * 120.05168 * 180.25698 * 8 6 5 35 35 H 0.97002 * 120.00249 * 0.02562 * 12 10 9 36 36 H 1.09002 * 111.00366 * 35.78886 * 15 13 12 37 37 H 1.09002 * 111.00429 * 271.97948 * 15 13 12 38 38 H 1.09001 * 110.36668 * 81.81066 * 16 15 13 39 39 H 1.09004 * 110.36307 * 204.13193 * 16 15 13 40 40 H 0.96997 * 119.99856 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.46974 * 61.44956 * 28 26 17 42 42 H 1.08997 * 109.47249 * 181.45250 * 28 26 17 43 43 H 1.08997 * 109.47061 * 301.45080 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2925 2.3739 -0.0005 5 6 1.9200 3.6034 -0.0011 6 6 3.3041 3.6842 -0.0001 7 17 4.0794 5.2375 -0.0015 8 6 4.0675 2.5358 0.0063 9 6 3.4442 1.2854 0.0005 10 6 4.2546 0.0526 0.0011 11 8 3.7086 -1.0338 0.0011 12 7 5.6001 0.1307 0.0016 13 6 6.4048 -1.0935 0.0016 14 1 5.9350 -1.8651 0.6116 15 6 6.6319 -1.6013 -1.4468 16 6 7.9594 -2.3857 -1.2978 17 7 8.7550 -1.6018 -0.3355 18 6 10.1204 -1.6131 -0.2326 19 1 10.6112 -0.9997 0.5086 20 6 10.8739 -2.4131 -1.0809 21 7 10.2758 -3.1610 -1.9837 22 14 12.7364 -2.4290 -0.9399 23 1 13.1514 -3.4844 0.0189 24 1 13.3312 -2.7084 -2.2716 25 1 13.2075 -1.1068 -0.4550 26 6 7.8397 -0.8054 0.4947 27 1 8.0662 0.2551 0.3836 28 6 7.9778 -1.2158 1.9622 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2139 2.3190 -0.0005 33 1 1.3295 4.5077 -0.0019 34 1 5.1454 2.6029 0.0112 35 1 6.0357 0.9974 0.0019 36 1 6.7464 -0.7676 -2.1397 37 1 5.8222 -2.2597 -1.7615 38 1 7.7678 -3.3849 -0.9066 39 1 8.4746 -2.4451 -2.2566 40 1 10.8022 -3.7196 -2.5767 41 1 8.9959 -1.0217 2.2994 42 1 7.2783 -0.6398 2.5679 43 1 7.7575 -2.2783 2.0645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089020068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:47 Heat of formation + Delta-G solvation = -20.763048 kcal Electronic energy + Delta-G solvation = -26965.675427 eV Core-core repulsion = 23038.167269 eV Total energy + Delta-G solvation = -3927.508158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84098 -39.22182 -37.98405 -37.38577 -36.40326 -34.01943 -32.36215 -31.42504 -30.32147 -30.29022 -28.58565 -27.55107 -25.22775 -24.00322 -23.71616 -22.42495 -20.77658 -20.08106 -19.80169 -18.55882 -17.37195 -16.90716 -16.64447 -16.10141 -15.75170 -15.56799 -15.07270 -14.70647 -14.54424 -14.15207 -13.88948 -13.75960 -13.54931 -13.28118 -12.88792 -12.74109 -12.35269 -12.20734 -12.10826 -11.91601 -11.65073 -11.53239 -11.27419 -11.11185 -10.99087 -10.85146 -10.80896 -10.48220 -10.37232 -10.07680 -9.74859 -9.64824 -9.54004 -9.50835 -8.66909 -8.60358 -8.42892 -6.85824 -5.63837 -3.06674 0.47299 0.82791 1.82508 2.73302 2.93180 3.29787 3.40836 3.45970 3.47698 3.59555 4.26152 4.30501 4.49734 4.60225 4.80711 4.84882 4.85258 5.04356 5.20446 5.24449 5.34098 5.43622 5.44206 5.57557 5.66770 5.71874 5.74415 5.86015 6.06382 6.15107 6.28468 6.34611 6.38359 6.57523 6.64010 6.76499 6.89608 6.99710 7.14773 7.54664 7.64323 7.75548 7.87402 8.36386 8.45409 9.22201 9.83122 10.47214 11.39446 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.002826 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.014130 B = 9906.216161 C =11199.169498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.274 6.274 3 C 0.189 3.811 4 C -0.210 4.210 5 C -0.046 4.046 6 C -0.083 4.083 7 Cl -0.066 7.066 8 C -0.038 4.038 9 C -0.154 4.154 10 C 0.558 3.442 11 O -0.517 6.517 12 N -0.713 5.713 13 C 0.138 3.862 14 H 0.093 0.907 15 C -0.153 4.153 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.220 4.220 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.155 3.845 27 H 0.036 0.964 28 C -0.156 4.156 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.395 0.605 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.014 0.986 39 H 0.109 0.891 40 H 0.252 0.748 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.560 14.405 4.103 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.184 6.184 3 C 0.140 3.860 4 C -0.229 4.229 5 C -0.065 4.065 6 C -0.110 4.110 7 Cl -0.037 7.037 8 C -0.057 4.057 9 C -0.158 4.158 10 C 0.344 3.656 11 O -0.393 6.393 12 N -0.364 5.364 13 C 0.033 3.967 14 H 0.111 0.889 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.320 5.320 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.047 3.953 27 H 0.053 0.947 28 C -0.215 4.215 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.127 0.873 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.595 13.411 3.994 24.899 hybrid contribution 0.977 0.742 0.139 1.235 sum -19.618 14.153 4.133 24.541 Atomic orbital electron populations 1.23220 0.78534 1.04665 1.01191 1.86439 1.20883 1.24928 1.86121 1.19114 0.90987 0.85126 0.90758 1.21187 1.00663 0.91201 1.09808 1.20970 0.92365 0.98165 0.95011 1.20602 0.92905 0.86911 1.10590 1.98381 1.81080 1.27012 1.97229 1.21114 1.00494 0.89394 0.94694 1.19423 0.91021 0.93862 1.11498 1.17759 0.82162 0.88161 0.77474 1.90828 1.71512 1.28275 1.48687 1.45986 1.05524 1.10132 1.74789 1.22164 0.90627 0.85507 0.98371 0.88931 1.23401 1.00339 1.00558 0.94939 1.21952 0.86761 0.91099 0.97386 1.44486 1.01437 1.49094 1.37007 1.19022 0.79968 1.21232 1.14610 0.90463 1.24785 0.98149 0.99100 0.98551 1.69797 1.33132 1.30862 1.23095 0.86087 0.84986 0.77612 0.76877 1.21669 1.21697 1.20722 1.21005 0.88094 0.95282 0.90906 0.94684 1.22246 1.00826 1.01032 0.97409 0.92451 0.87703 0.92475 0.83890 0.84276 0.83752 0.77011 0.92016 0.91907 0.96758 0.87345 0.93708 0.92690 0.94306 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.27 -3.46 8.57 -40.59 -0.35 -3.81 16 3 C 0.19 2.22 6.70 -38.70 -0.26 1.96 16 4 C -0.21 -1.75 9.03 -39.48 -0.36 -2.11 16 5 C -0.05 -0.37 9.81 -39.50 -0.39 -0.75 16 6 C -0.08 -0.78 6.31 -39.55 -0.25 -1.03 16 7 Cl -0.07 -0.59 28.94 -51.86 -1.50 -2.09 16 8 C -0.04 -0.39 9.31 -39.16 -0.36 -0.76 16 9 C -0.15 -1.98 5.89 -104.85 -0.62 -2.60 16 10 C 0.56 8.96 7.76 -12.47 -0.10 8.86 16 11 O -0.52 -10.11 14.89 -16.60 -0.25 -10.35 16 12 N -0.71 -10.94 5.16 -53.01 -0.27 -11.22 16 13 C 0.14 2.56 2.76 -66.04 -0.18 2.37 16 14 H 0.09 1.84 7.41 -51.93 -0.38 1.46 16 15 C -0.15 -3.10 6.76 -24.58 -0.17 -3.26 16 16 C 0.15 3.76 5.89 -2.53 -0.01 3.74 16 17 N -0.60 -14.87 3.13 -162.50 -0.51 -15.37 16 18 C -0.22 -5.98 9.87 -15.06 -0.15 -6.13 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -26.69 10.09 55.49 0.56 -26.13 16 22 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.16 3.13 3.48 -66.90 -0.23 2.90 16 27 H 0.04 0.69 7.70 -51.93 -0.40 0.29 16 28 C -0.16 -2.91 9.14 37.16 0.34 -2.57 16 29 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.14 0.78 6.30 -52.49 -0.33 0.45 16 33 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 34 H 0.14 1.32 6.40 -52.49 -0.34 0.99 16 35 H 0.39 5.06 6.35 -40.82 -0.26 4.80 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 2.98 5.87 -51.93 -0.31 2.67 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.05 1.05 8.03 -51.93 -0.42 0.64 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -32.72 366.08 -9.40 -42.12 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.73 Total: 3.07 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.84 Total: 1.37 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.22 Total: -52.72 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.59 Total: -14.16 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.72 -9.40 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089020068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.354 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds