Wall clock time and date at job start Tue Mar 31 2020 20:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35668 * 117.00050 * 2 1 4 4 C 1.38696 * 120.14075 * 359.97438 * 3 2 1 5 5 C 1.38048 * 120.10127 * 180.02562 * 4 3 2 6 6 C 1.38647 * 120.37996 * 359.95323 * 5 4 3 7 7 Cl 1.73597 * 119.86542 * 179.97438 * 6 5 4 8 8 C 1.37900 * 120.27113 * 359.76614 * 6 5 4 9 9 C 1.39710 * 119.89152 * 0.53495 * 8 6 5 10 10 C 1.47530 * 120.18596 * 179.72414 * 9 8 6 11 11 O 1.21589 * 120.00150 * 179.72405 * 10 9 8 12 12 N 1.34779 * 119.99764 * 359.72040 * 10 9 8 13 13 C 1.46498 * 119.99910 * 180.02562 * 12 10 9 14 14 H 1.09005 * 110.78011 * 323.21238 * 13 12 10 15 15 C 1.55158 * 110.72351 * 86.45393 * 13 12 10 16 16 C 1.54909 * 101.61642 * 153.88368 * 15 13 12 17 17 N 1.47427 * 104.83281 * 322.96922 * 16 15 13 18 18 C 1.36930 * 125.64624 * 204.16403 * 17 16 15 19 19 H 1.08002 * 119.99784 * 179.97438 * 18 17 16 20 20 C 1.38820 * 120.00266 * 359.97438 * 18 17 16 21 21 N 1.31614 * 119.99878 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99929 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47699 * 89.99771 * 22 20 18 24 24 H 1.48506 * 109.46953 * 209.99990 * 22 20 18 25 25 H 1.48506 * 109.47233 * 329.99514 * 22 20 18 26 26 C 1.47014 * 108.70101 * 24.13279 * 17 16 15 27 27 H 1.09004 * 109.88272 * 239.36515 * 26 17 16 28 28 C 1.53006 * 109.88374 * 118.35608 * 26 17 16 29 29 H 1.08993 * 109.47139 * 60.00081 * 1 2 3 30 30 H 1.09006 * 109.46999 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46828 * 299.99443 * 1 2 3 32 32 H 1.07998 * 119.94643 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.81336 * 179.97438 * 5 4 3 34 34 H 1.07996 * 120.05168 * 180.25698 * 8 6 5 35 35 H 0.97002 * 120.00249 * 0.02562 * 12 10 9 36 36 H 1.09002 * 111.00366 * 35.78886 * 15 13 12 37 37 H 1.09002 * 111.00429 * 271.97948 * 15 13 12 38 38 H 1.09001 * 110.36668 * 81.81066 * 16 15 13 39 39 H 1.09004 * 110.36307 * 204.13193 * 16 15 13 40 40 H 0.96997 * 119.99856 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.46974 * 61.44956 * 28 26 17 42 42 H 1.08997 * 109.47249 * 181.45250 * 28 26 17 43 43 H 1.08997 * 109.47061 * 301.45080 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2925 2.3739 -0.0005 5 6 1.9200 3.6034 -0.0011 6 6 3.3041 3.6842 -0.0001 7 17 4.0794 5.2375 -0.0015 8 6 4.0675 2.5358 0.0063 9 6 3.4442 1.2854 0.0005 10 6 4.2546 0.0526 0.0011 11 8 3.7086 -1.0338 0.0011 12 7 5.6001 0.1307 0.0016 13 6 6.4048 -1.0935 0.0016 14 1 5.9350 -1.8651 0.6116 15 6 6.6319 -1.6013 -1.4468 16 6 7.9594 -2.3857 -1.2978 17 7 8.7550 -1.6018 -0.3355 18 6 10.1204 -1.6131 -0.2326 19 1 10.6112 -0.9997 0.5086 20 6 10.8739 -2.4131 -1.0809 21 7 10.2758 -3.1610 -1.9837 22 14 12.7364 -2.4290 -0.9399 23 1 13.1514 -3.4844 0.0189 24 1 13.3312 -2.7084 -2.2716 25 1 13.2075 -1.1068 -0.4550 26 6 7.8397 -0.8054 0.4947 27 1 8.0662 0.2551 0.3836 28 6 7.9778 -1.2158 1.9622 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2139 2.3190 -0.0005 33 1 1.3295 4.5077 -0.0019 34 1 5.1454 2.6029 0.0112 35 1 6.0357 0.9974 0.0019 36 1 6.7464 -0.7676 -2.1397 37 1 5.8222 -2.2597 -1.7615 38 1 7.7678 -3.3849 -0.9066 39 1 8.4746 -2.4451 -2.2566 40 1 10.8022 -3.7196 -2.5767 41 1 8.9959 -1.0217 2.2994 42 1 7.2783 -0.6398 2.5679 43 1 7.7575 -2.2783 2.0645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089020068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:46 Heat of formation + Delta-G solvation = -40.245171 kcal Electronic energy + Delta-G solvation = -26966.520235 eV Core-core repulsion = 23038.167269 eV Total energy + Delta-G solvation = -3928.352966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74787 -40.47559 -39.03439 -38.66780 -37.13140 -35.60522 -33.97736 -32.55075 -32.01473 -31.01716 -30.36226 -28.19369 -26.72604 -25.86717 -24.82297 -23.19657 -22.25707 -21.55333 -21.38251 -19.49052 -18.71937 -18.29900 -17.76634 -17.12146 -16.83781 -16.55136 -16.46691 -15.88187 -15.81993 -15.64163 -15.32661 -14.80522 -14.68592 -14.34652 -14.25582 -13.99278 -13.71939 -13.54860 -13.24841 -12.99734 -12.92680 -12.81377 -12.74131 -12.60242 -12.30476 -12.21598 -12.09999 -11.96705 -11.95148 -11.65798 -11.56739 -11.45466 -10.89879 -10.72177 -10.32472 -9.99887 -9.22750 -8.89393 -7.73600 -5.18788 -0.32441 0.10062 1.11972 1.49184 1.50834 1.59266 1.76780 2.05684 2.27702 2.53117 2.63983 3.36788 3.46154 3.60140 3.66451 3.84329 3.88889 3.96929 4.06902 4.20206 4.29397 4.32881 4.41013 4.49779 4.58948 4.61740 4.64008 4.67491 4.76475 4.82004 4.94221 5.03895 5.04885 5.06583 5.12781 5.35668 5.38411 5.51002 5.60450 5.61683 5.80646 6.30521 6.31127 6.55430 7.12045 7.23373 7.79627 8.43644 9.28478 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.002826 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.014130 B = 9906.216161 C =11199.169498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.311 6.311 3 C 0.176 3.824 4 C -0.199 4.199 5 C -0.032 4.032 6 C -0.090 4.090 7 Cl -0.061 7.061 8 C -0.036 4.036 9 C -0.182 4.182 10 C 0.559 3.441 11 O -0.559 6.559 12 N -0.704 5.704 13 C 0.155 3.845 14 H 0.079 0.921 15 C -0.138 4.138 16 C 0.159 3.841 17 N -0.613 5.613 18 C -0.227 4.227 19 H 0.086 0.914 20 C -0.069 4.069 21 N -0.951 5.951 22 Si 0.979 3.021 23 H -0.290 1.290 24 H -0.296 1.296 25 H -0.266 1.266 26 C 0.151 3.849 27 H 0.053 0.947 28 C -0.147 4.147 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.153 0.847 35 H 0.409 0.591 36 H 0.068 0.932 37 H 0.063 0.937 38 H -0.015 1.015 39 H 0.078 0.922 40 H 0.246 0.754 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.080 17.484 5.074 28.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.222 6.222 3 C 0.127 3.873 4 C -0.217 4.217 5 C -0.051 4.051 6 C -0.116 4.116 7 Cl -0.032 7.032 8 C -0.056 4.056 9 C -0.186 4.186 10 C 0.347 3.653 11 O -0.439 6.439 12 N -0.356 5.356 13 C 0.050 3.950 14 H 0.097 0.903 15 C -0.178 4.178 16 C 0.034 3.966 17 N -0.339 5.339 18 C -0.356 4.356 19 H 0.104 0.896 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.808 3.192 23 H -0.217 1.217 24 H -0.223 1.223 25 H -0.191 1.191 26 C 0.045 3.955 27 H 0.070 0.930 28 C -0.206 4.206 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.194 0.806 33 H 0.189 0.811 34 H 0.170 0.830 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.003 0.997 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.132 16.553 4.994 28.085 hybrid contribution 1.322 -0.146 -0.140 1.337 sum -20.810 16.407 4.854 26.940 Atomic orbital electron populations 1.23513 0.76171 1.05677 1.03110 1.86387 1.23572 1.26039 1.86252 1.19391 0.90885 0.86022 0.90962 1.21499 1.02072 0.89938 1.08204 1.21378 0.91960 0.99215 0.92512 1.20718 0.93617 0.86708 1.10594 1.98388 1.81169 1.26448 1.97208 1.21148 1.01038 0.89012 0.94357 1.19205 0.91493 0.92949 1.14990 1.18268 0.82047 0.88894 0.76047 1.90800 1.72205 1.30181 1.50681 1.45768 1.05434 1.09586 1.74806 1.21725 0.90226 0.86611 0.96481 0.90280 1.23194 0.97895 1.00178 0.96532 1.21655 0.88547 0.90670 0.95767 1.44720 1.01577 1.49544 1.38026 1.19406 0.81240 1.20705 1.14201 0.89590 1.25619 1.02428 0.99372 0.98715 1.70045 1.34308 1.31776 1.23996 0.85065 0.79902 0.78004 0.76276 1.21745 1.22306 1.19100 1.21204 0.87854 0.95353 0.91134 0.92957 1.22128 1.01370 1.00489 0.96618 0.90519 0.87400 0.90382 0.80643 0.81119 0.82990 0.75313 0.91339 0.91822 0.99691 0.90424 0.94461 0.93202 0.91101 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.31 -7.65 8.57 -68.92 -0.59 -8.24 16 3 C 0.18 3.86 6.70 22.84 0.15 4.01 16 4 C -0.20 -2.63 9.03 22.33 0.20 -2.43 16 5 C -0.03 -0.38 9.81 22.32 0.22 -0.16 16 6 C -0.09 -1.42 6.31 22.29 0.14 -1.28 16 7 Cl -0.06 -0.92 28.94 -2.72 -0.08 -1.00 16 8 C -0.04 -0.69 9.31 22.55 0.21 -0.48 16 9 C -0.18 -4.50 5.89 -20.01 -0.12 -4.62 16 10 C 0.56 17.86 7.76 86.69 0.67 18.53 16 11 O -0.56 -22.35 14.89 16.93 0.25 -22.10 16 12 N -0.70 -21.11 5.16 -439.90 -2.27 -23.38 16 13 C 0.16 5.78 2.76 46.22 0.13 5.91 16 14 H 0.08 3.20 7.41 -2.38 -0.02 3.19 16 15 C -0.14 -5.74 6.76 31.99 0.22 -5.53 16 16 C 0.16 8.17 5.89 86.85 0.51 8.68 16 17 N -0.61 -31.13 3.13 -668.04 -2.09 -33.22 16 18 C -0.23 -12.41 9.87 84.04 0.83 -11.58 16 19 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 21 N -0.95 -57.15 10.09 21.65 0.22 -56.93 16 22 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.15 6.02 3.48 45.38 0.16 6.18 16 27 H 0.05 1.94 7.70 -2.38 -0.02 1.92 16 28 C -0.15 -5.35 9.14 71.98 0.66 -4.69 16 29 H 0.08 0.63 7.66 -2.39 -0.02 0.61 16 30 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.08 0.62 7.66 -2.39 -0.02 0.60 16 32 H 0.18 1.10 6.30 -2.91 -0.02 1.08 16 33 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 34 H 0.15 2.50 6.40 -2.91 -0.02 2.48 16 35 H 0.41 9.87 6.35 -92.71 -0.59 9.28 16 36 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 38 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.08 4.49 5.87 -2.38 -0.01 4.48 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -73.68 366.08 3.49 -70.20 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.46 Total: 16.75 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 5.56 Total: 10.32 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -4.14 Total: -113.53 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.34 Total: -30.34 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -73.68 3.49 -70.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089020068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.950 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds