Wall clock time and date at job start Tue Mar 31 2020 20:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35657 * 117.00471 * 2 1 4 4 C 1.38673 * 120.13900 * 359.97438 * 3 2 1 5 5 C 1.38090 * 120.11912 * 179.97438 * 4 3 2 6 6 C 1.38474 * 120.41819 * 359.97438 * 5 4 3 7 7 C 1.37970 * 120.28281 * 359.76665 * 6 5 4 8 8 Cl 1.73596 * 120.06929 * 180.28274 * 7 6 5 9 9 C 1.39847 * 119.86725 * 0.48438 * 7 6 5 10 10 C 1.47465 * 120.20141 * 179.76551 * 9 7 6 11 11 O 1.21593 * 119.99800 * 269.72982 * 10 9 7 12 12 N 1.34777 * 119.99775 * 89.72757 * 10 9 7 13 13 C 1.46496 * 119.99912 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.63935 * 323.31291 * 13 12 10 15 15 C 1.55161 * 110.72135 * 86.45490 * 13 12 10 16 16 C 1.54910 * 101.58380 * 153.86865 * 15 13 12 17 17 N 1.47432 * 104.82719 * 322.98959 * 16 15 13 18 18 C 1.36938 * 125.64377 * 204.15018 * 17 16 15 19 19 H 1.07996 * 119.99482 * 161.46859 * 18 17 16 20 20 C 1.38807 * 120.00184 * 341.47317 * 18 17 16 21 21 N 1.31625 * 120.00270 * 157.60914 * 20 18 17 22 22 Si 1.86799 * 120.00055 * 337.60616 * 20 18 17 23 23 H 1.48501 * 109.47323 * 84.54054 * 22 20 18 24 24 H 1.48501 * 109.47236 * 204.54385 * 22 20 18 25 25 H 1.48507 * 109.47153 * 324.54179 * 22 20 18 26 26 C 1.47022 * 108.70485 * 24.12981 * 17 16 15 27 27 H 1.08997 * 110.01065 * 239.45343 * 26 17 16 28 28 C 1.52998 * 109.88067 * 118.35704 * 26 17 16 29 29 H 1.08994 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46727 * 300.00013 * 1 2 3 31 31 H 1.09000 * 109.47031 * 59.99968 * 1 2 3 32 32 H 1.07999 * 119.94110 * 0.02562 * 4 3 2 33 33 H 1.08010 * 119.79341 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.86363 * 180.02562 * 6 5 4 35 35 H 0.96996 * 120.00159 * 0.02562 * 12 10 9 36 36 H 1.09000 * 110.99941 * 271.93928 * 15 13 12 37 37 H 1.08992 * 111.00519 * 35.78869 * 15 13 12 38 38 H 1.08999 * 110.37037 * 81.82474 * 16 15 13 39 39 H 1.09003 * 110.36431 * 204.15152 * 16 15 13 40 40 H 0.96991 * 120.00122 * 179.97438 * 21 20 18 41 41 H 1.08999 * 109.47336 * 302.19423 * 28 26 17 42 42 H 1.09001 * 109.46836 * 62.19564 * 28 26 17 43 43 H 1.08999 * 109.46839 * 182.18950 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2926 2.3736 -0.0005 5 6 1.9201 3.6037 0.0000 6 6 3.3024 3.6856 0.0016 7 6 4.0674 2.5375 0.0075 8 17 5.7999 2.6467 0.0169 9 6 3.4444 1.2855 0.0017 10 6 4.2550 0.0536 0.0028 11 8 4.5900 -0.4546 -1.0498 12 7 4.6244 -0.5090 1.1705 13 6 5.4301 -1.7325 1.1716 14 1 5.1333 -2.3887 0.3534 15 6 6.9419 -1.3944 1.0833 16 6 7.5778 -2.6326 1.7631 17 7 6.6526 -2.9788 2.8576 18 6 6.9826 -3.6695 3.9930 19 1 6.3403 -3.6216 4.8599 20 6 8.1425 -4.4311 4.0297 21 7 8.6987 -4.7279 5.1852 22 14 8.9142 -5.0348 2.4393 23 1 9.7875 -3.9727 1.8784 24 1 9.7244 -6.2491 2.7120 25 1 7.8442 -5.3626 1.4631 26 6 5.3172 -2.4594 2.5282 27 1 4.9889 -1.7602 3.2971 28 6 4.3218 -3.6160 2.4175 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2141 2.3186 -0.0005 33 1 1.3290 4.5077 0.0000 34 1 3.7838 4.6524 0.0024 35 1 4.3569 -0.1037 2.0101 36 1 7.2634 -1.3105 0.0452 37 1 7.1715 -0.4838 1.6366 38 1 7.6530 -3.4576 1.0547 39 1 8.5610 -2.3831 2.1621 40 1 9.5090 -5.2603 5.2108 41 1 4.6656 -4.3201 1.6598 42 1 4.2472 -4.1244 3.3788 43 1 3.3433 -3.2274 2.1352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089060110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:39 Heat of formation + Delta-G solvation = -19.752133 kcal Electronic energy + Delta-G solvation = -27473.551812 eV Core-core repulsion = 23546.087491 eV Total energy + Delta-G solvation = -3927.464321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.89059 -39.41215 -38.11951 -37.55079 -36.56037 -34.06476 -32.27669 -31.53670 -30.65837 -30.51022 -29.18767 -27.76201 -25.34189 -23.99519 -23.64579 -22.60869 -21.31826 -20.40115 -19.77513 -18.62067 -17.42939 -16.93798 -16.86901 -16.33359 -15.99804 -15.61989 -15.28341 -14.95259 -14.66074 -14.49578 -13.92671 -13.76256 -13.59946 -13.30341 -12.92981 -12.82978 -12.70126 -12.28463 -12.20191 -12.08615 -11.79896 -11.75474 -11.53462 -11.27668 -11.26049 -11.14878 -10.84179 -10.73746 -10.40007 -10.13230 -9.94925 -9.80805 -9.40342 -9.23792 -8.78799 -8.71341 -8.62290 -7.05109 -5.92230 -3.22781 0.54791 0.83242 1.69196 2.63694 2.86131 3.02716 3.28819 3.39496 3.52707 3.55577 4.27630 4.47375 4.58333 4.61322 4.66536 4.76279 4.82217 4.84698 4.97933 5.10676 5.16712 5.22690 5.30222 5.37550 5.63386 5.65970 5.68221 5.82964 5.91338 6.00048 6.02294 6.09310 6.24148 6.35784 6.47251 6.51144 6.67410 6.78707 6.84040 6.85414 7.02063 7.62798 7.72953 8.29528 8.33964 8.85067 9.71272 10.19222 11.23760 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.003367 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.315241 B = 8313.944625 C = 9209.306891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.174 3.826 4 C -0.209 4.209 5 C -0.053 4.053 6 C -0.151 4.151 7 C 0.031 3.969 8 Cl -0.041 7.041 9 C -0.152 4.152 10 C 0.575 3.425 11 O -0.525 6.525 12 N -0.702 5.702 13 C 0.136 3.864 14 H 0.096 0.904 15 C -0.139 4.139 16 C 0.112 3.888 17 N -0.601 5.601 18 C -0.237 4.237 19 H 0.092 0.908 20 C 0.023 3.977 21 N -0.909 5.909 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.276 1.276 26 C 0.157 3.843 27 H 0.046 0.954 28 C -0.155 4.155 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.028 0.972 39 H 0.062 0.938 40 H 0.263 0.737 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.969 18.522 -10.694 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.214 6.214 3 C 0.127 3.873 4 C -0.228 4.228 5 C -0.071 4.071 6 C -0.170 4.170 7 C 0.003 3.997 8 Cl -0.012 7.012 9 C -0.157 4.157 10 C 0.360 3.640 11 O -0.401 6.401 12 N -0.352 5.352 13 C 0.032 3.968 14 H 0.114 0.886 15 C -0.179 4.179 16 C -0.014 4.014 17 N -0.327 5.327 18 C -0.364 4.364 19 H 0.110 0.890 20 C -0.175 4.175 21 N -0.553 5.553 22 Si 0.711 3.289 23 H -0.212 1.212 24 H -0.231 1.231 25 H -0.201 1.201 26 C 0.050 3.950 27 H 0.064 0.936 28 C -0.214 4.214 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.327 17.789 -11.264 27.268 hybrid contribution 0.249 -0.128 -0.463 0.541 sum -17.078 17.660 -11.727 27.222 Atomic orbital electron populations 1.23189 0.77420 1.04760 1.01531 1.86138 1.22049 1.25825 1.87437 1.18739 0.90055 0.85163 0.93371 1.21292 1.00645 0.91832 1.08996 1.21003 0.93690 0.97504 0.94922 1.20922 0.93653 0.97389 1.05035 1.20664 0.86007 0.92775 1.00227 1.98432 1.08049 1.98338 1.96347 1.19057 0.91275 0.93654 1.11663 1.17640 0.78995 0.82987 0.84421 1.90804 1.55292 1.62793 1.31235 1.45953 1.53740 1.27510 1.07969 1.22143 0.90352 0.84987 0.99331 0.88610 1.23129 0.94815 0.99306 1.00642 1.21961 0.95202 0.93737 0.90463 1.44816 1.02484 1.65036 1.20365 1.18574 1.07560 1.22052 0.88180 0.89005 1.24969 0.97332 0.98954 0.96294 1.69835 1.20321 1.41175 1.23958 0.87018 0.78879 0.78114 0.84920 1.21172 1.23113 1.20143 1.21054 0.87592 0.94186 0.92202 0.93618 1.22202 0.97471 0.99417 1.02351 0.87618 0.92145 0.92270 0.84246 0.84330 0.84119 0.76528 0.91194 0.90883 0.95491 0.91962 0.92733 0.93037 0.92037 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.40 9.94 -18.67 -0.19 -3.58 16 3 C 0.17 1.92 6.70 -38.70 -0.26 1.66 16 4 C -0.21 -1.60 9.03 -39.48 -0.36 -1.95 16 5 C -0.05 -0.35 10.03 -39.55 -0.40 -0.75 16 6 C -0.15 -1.26 9.81 -39.59 -0.39 -1.65 16 7 C 0.03 0.35 6.35 -39.08 -0.25 0.11 16 8 Cl -0.04 -0.50 28.04 -51.86 -1.45 -1.96 16 9 C -0.15 -1.98 5.64 -104.82 -0.59 -2.57 16 10 C 0.58 9.18 5.84 -12.50 -0.07 9.11 16 11 O -0.53 -10.28 16.83 5.28 0.09 -10.19 16 12 N -0.70 -10.65 5.20 -53.09 -0.28 -10.93 16 13 C 0.14 2.42 2.76 -66.10 -0.18 2.24 16 14 H 0.10 1.82 7.41 -51.93 -0.38 1.44 16 15 C -0.14 -2.60 6.77 -24.58 -0.17 -2.77 16 16 C 0.11 2.51 4.69 -2.52 -0.01 2.50 16 17 N -0.60 -14.42 2.94 -162.57 -0.48 -14.90 16 18 C -0.24 -6.63 10.18 -15.06 -0.15 -6.78 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.02 0.67 5.43 -17.43 -0.09 0.58 16 21 N -0.91 -28.07 13.97 55.49 0.78 -27.30 16 22 Si 0.88 22.96 24.27 -169.99 -4.13 18.83 16 23 H -0.28 -7.19 6.49 56.52 0.37 -6.82 16 24 H -0.30 -8.01 7.11 56.52 0.40 -7.60 16 25 H -0.28 -7.13 6.66 56.52 0.38 -6.76 16 26 C 0.16 3.06 3.48 -66.96 -0.23 2.83 16 27 H 0.05 0.86 7.68 -51.93 -0.40 0.47 16 28 C -0.16 -2.87 9.14 37.16 0.34 -2.53 16 29 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 32 H 0.14 0.67 6.30 -52.49 -0.33 0.34 16 33 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.40 5.26 8.29 -40.82 -0.34 4.93 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.03 0.64 5.58 -51.93 -0.29 0.35 16 39 H 0.06 1.48 6.64 -51.93 -0.34 1.14 16 40 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -34.65 365.56 -7.85 -42.49 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.88 Total: 0.85 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.82 Total: 1.18 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.02 Total: -53.13 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.10 Total: -13.78 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.13 Total: 18.83 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.45 Total: -1.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.65 -7.85 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089060110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.743 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds