Wall clock time and date at job start Tue Mar 31 2020 20:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.57391 * 2 1 4 4 C 1.53090 * 109.68384 * 120.32128 * 2 1 3 5 5 C 1.52584 * 109.95989 * 182.89828 * 4 2 1 6 6 H 1.09000 * 109.19271 * 169.02859 * 5 4 2 7 7 N 1.46499 * 109.22455 * 49.64579 * 5 4 2 8 8 C 1.34769 * 119.99857 * 153.76975 * 7 5 4 9 9 O 1.21363 * 120.00278 * 359.97438 * 8 7 5 10 10 C 1.49310 * 120.00238 * 180.02562 * 8 7 5 11 11 O 1.21413 * 119.99516 * 359.97438 * 10 8 7 12 12 N 1.34773 * 120.00416 * 180.27495 * 10 8 7 13 13 C 1.40290 * 120.00078 * 179.72627 * 12 10 8 14 14 C 1.40719 * 126.10321 * 0.02562 * 13 12 10 15 15 N 1.30875 * 108.38216 * 179.97438 * 14 13 12 16 16 N 1.40060 * 108.43339 * 359.97438 * 15 14 13 17 17 C 1.37298 * 126.05784 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00061 * 179.97438 * 17 16 15 19 19 C 1.39005 * 119.99625 * 359.97438 * 17 16 15 20 20 N 1.31277 * 120.00156 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99967 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47022 * 89.99785 * 21 19 17 23 23 H 1.48498 * 109.47122 * 210.00246 * 21 19 17 24 24 H 1.48506 * 109.46914 * 330.00105 * 21 19 17 25 25 C 1.35794 * 126.09879 * 179.71175 * 13 12 10 26 26 C 1.52584 * 110.72134 * 289.32520 * 5 4 2 27 27 C 1.53097 * 109.95786 * 70.67585 * 26 5 4 28 28 S 1.81739 * 109.57619 * 239.74641 * 2 1 3 29 29 H 1.08995 * 109.46762 * 180.25562 * 1 2 3 30 30 H 1.08999 * 109.47147 * 300.25405 * 1 2 3 31 31 H 1.08994 * 109.46884 * 60.25674 * 1 2 3 32 32 H 1.08999 * 109.39156 * 62.74771 * 4 2 1 33 33 H 1.09006 * 109.39486 * 303.04858 * 4 2 1 34 34 H 0.97000 * 119.99795 * 333.76864 * 7 5 4 35 35 H 0.97001 * 120.00114 * 359.71509 * 12 10 8 36 36 H 1.08004 * 125.81257 * 359.94359 * 14 13 12 37 37 H 0.97001 * 120.00178 * 179.97438 * 20 19 17 38 38 H 1.07997 * 126.24827 * 359.97438 * 25 13 12 39 39 H 1.09004 * 109.38555 * 190.81905 * 26 5 4 40 40 H 1.09001 * 109.39313 * 310.52336 * 26 5 4 41 41 H 1.09004 * 109.57513 * 56.77651 * 27 26 5 42 42 H 1.08990 * 109.57938 * 177.16349 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0457 -0.7277 1.2443 5 6 3.5698 -0.6691 1.2878 6 1 3.9139 -1.0133 2.2630 7 7 4.0054 0.7146 1.0833 8 6 5.1871 1.1295 1.5810 9 8 5.8902 0.3571 2.1989 10 6 5.6308 2.5399 1.3731 11 8 4.9273 3.3128 0.7552 12 7 6.8151 2.9534 1.8660 13 6 7.2346 4.2771 1.6657 14 6 6.5250 5.2761 0.9738 15 7 7.2330 6.3765 0.9972 16 7 8.4173 6.1263 1.7020 17 6 9.4205 7.0319 1.9438 18 1 10.2955 6.7324 2.5014 19 6 9.3098 8.3344 1.4708 20 7 8.2460 8.6986 0.7934 21 14 10.6744 9.5668 1.8004 22 1 11.6662 9.5142 0.6963 23 1 10.0982 10.9329 1.8836 24 1 11.3437 9.2329 3.0833 25 6 8.3952 4.8245 2.1100 26 6 4.1753 -1.5524 0.2008 27 6 3.9298 -0.9293 -1.1759 28 16 2.1390 -0.8627 -1.4791 29 1 -0.3633 -1.0276 0.0046 30 1 -0.3633 0.5178 0.8877 31 1 -0.3633 0.5098 -0.8922 32 1 1.7243 -1.7688 1.2139 33 1 1.6397 -0.2512 2.1366 34 1 3.4433 1.3320 0.5896 35 1 7.3773 2.3359 2.3594 36 1 5.5605 5.1552 0.5031 37 1 8.1686 9.6075 0.4637 38 1 9.1612 4.3210 2.6809 39 1 5.2480 -1.6484 0.3685 40 1 3.7148 -2.5397 0.2385 41 1 4.3418 0.0797 -1.1988 42 1 4.4078 -1.5384 -1.9430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120995250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:41 Heat of formation + Delta-G solvation = 13.779662 kcal Electronic energy + Delta-G solvation = -26564.576327 eV Core-core repulsion = 22672.902511 eV Total energy + Delta-G solvation = -3891.673816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.78239 -39.73622 -38.45379 -37.40037 -34.57040 -33.84207 -33.23536 -32.48586 -30.36078 -29.05596 -28.07080 -25.84135 -25.31086 -24.08333 -22.30359 -21.33319 -20.78410 -20.00647 -19.52727 -18.34752 -17.51867 -17.18829 -16.45806 -16.00474 -15.64383 -15.47420 -15.22188 -14.97759 -14.80223 -14.26825 -14.20287 -13.94940 -13.72894 -13.63813 -13.17201 -13.04615 -13.02710 -12.65701 -12.18072 -12.02298 -11.79411 -11.74753 -11.61537 -11.48524 -11.31584 -11.27969 -10.92022 -10.85884 -10.57765 -10.34172 -9.95255 -9.46793 -9.26370 -9.20300 -8.91334 -8.16591 -7.95222 -6.82312 -6.63381 -4.30996 1.41806 1.56019 2.21808 2.47627 2.90777 3.01843 3.06853 3.26236 3.66551 3.69988 3.88054 4.16070 4.19291 4.32517 4.42475 4.53051 4.54526 4.70031 4.79981 4.95285 4.96503 4.98519 5.17531 5.27250 5.31731 5.44701 5.49435 5.55802 5.62177 5.67895 5.75128 6.09160 6.16252 6.31631 6.70132 6.85012 6.85300 7.08987 7.12963 7.68077 7.79262 8.03245 8.14303 8.43014 8.65230 9.27639 9.56195 10.32340 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.002200 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.090786 B =12724.472290 C =13179.680918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 H 0.090 0.910 4 C -0.125 4.125 5 C 0.136 3.864 6 H 0.102 0.898 7 N -0.704 5.704 8 C 0.517 3.483 9 O -0.525 6.525 10 C 0.481 3.519 11 O -0.523 6.523 12 N -0.581 5.581 13 C -0.071 4.071 14 C -0.026 4.026 15 N -0.260 5.260 16 N -0.137 5.137 17 C -0.321 4.321 18 H 0.118 0.882 19 C 0.046 3.954 20 N -0.767 5.767 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.263 1.263 25 C -0.078 4.078 26 C -0.133 4.133 27 C -0.083 4.083 28 S -0.261 6.261 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.411 0.589 35 H 0.409 0.591 36 H 0.177 0.823 37 H 0.276 0.724 38 H 0.149 0.851 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.544 -18.320 0.331 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.188 4.188 3 H 0.108 0.892 4 C -0.164 4.164 5 C 0.031 3.969 6 H 0.120 0.880 7 N -0.361 5.361 8 C 0.298 3.702 9 O -0.401 6.401 10 C 0.262 3.738 11 O -0.401 6.401 12 N -0.224 5.224 13 C -0.177 4.177 14 C -0.202 4.202 15 N -0.091 5.091 16 N 0.096 4.904 17 C -0.454 4.454 18 H 0.136 0.864 19 C -0.171 4.171 20 N -0.393 5.393 21 Si 0.760 3.240 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.229 4.229 26 C -0.173 4.173 27 C -0.231 4.231 28 S -0.035 6.035 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.250 0.750 35 H 0.244 0.756 36 H 0.194 0.806 37 H 0.087 0.913 38 H 0.167 0.833 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.157 -17.273 -1.029 20.589 hybrid contribution 1.390 0.069 1.402 1.975 sum -9.767 -17.203 0.373 19.786 Atomic orbital electron populations 1.21599 0.91267 1.03135 1.03052 1.23208 1.00068 1.01156 0.94330 0.89171 1.22119 0.93771 1.02772 0.97771 1.21031 0.93939 0.81266 1.00654 0.88019 1.46028 1.20717 1.12859 1.56460 1.20350 0.81919 0.88733 0.79148 1.90728 1.53612 1.55975 1.39745 1.19633 0.83214 0.87770 0.83199 1.90665 1.53988 1.54647 1.40758 1.42138 1.18134 1.10907 1.51190 1.17246 0.99086 0.84767 1.16559 1.24144 1.01625 0.90145 1.04262 1.78270 0.93504 1.19907 1.17423 1.44575 1.12074 1.05088 1.28667 1.19933 0.97991 0.90534 1.36932 0.86409 1.25672 0.97918 0.98300 0.95259 1.70202 1.24779 1.18811 1.25510 0.85801 0.79705 0.79038 0.79479 1.19502 1.20017 1.18725 1.21307 1.00665 0.88090 1.12854 1.22121 1.02947 0.99351 0.92886 1.23450 0.93894 1.05280 1.00503 1.86944 1.07305 1.77678 1.31536 0.91489 0.90886 0.91440 0.88791 0.89754 0.75028 0.75598 0.80583 0.91314 0.83339 0.89818 0.89449 0.89394 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.23 37.16 0.34 -0.50 16 2 C -0.06 -0.45 2.86 -26.68 -0.08 -0.53 16 3 H 0.09 0.77 6.02 -51.93 -0.31 0.46 16 4 C -0.12 -0.84 4.83 -26.90 -0.13 -0.97 16 5 C 0.14 1.17 2.71 -68.36 -0.19 0.98 16 6 H 0.10 0.93 7.54 -51.93 -0.39 0.54 16 7 N -0.70 -7.80 3.72 -54.70 -0.20 -8.00 16 8 C 0.52 7.38 7.84 -11.65 -0.09 7.29 16 9 O -0.53 -8.08 16.12 5.49 0.09 -7.99 16 10 C 0.48 8.45 7.85 -11.65 -0.09 8.36 16 11 O -0.52 -10.34 13.62 5.44 0.07 -10.26 16 12 N -0.58 -10.73 5.45 -10.45 -0.06 -10.78 16 13 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 14 C -0.03 -0.67 10.84 -17.02 -0.18 -0.85 16 15 N -0.26 -7.41 10.39 30.81 0.32 -7.09 16 16 N -0.14 -3.71 3.73 -11.40 -0.04 -3.75 16 17 C -0.32 -8.34 10.25 -14.82 -0.15 -8.49 16 18 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 19 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 20 N -0.77 -21.00 11.81 55.50 0.66 -20.35 16 21 Si 0.94 18.55 29.55 -169.99 -5.02 13.53 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 25 C -0.08 -1.81 11.50 -16.37 -0.19 -2.00 16 26 C -0.13 -1.09 5.50 -26.89 -0.15 -1.24 16 27 C -0.08 -0.74 6.25 37.21 0.23 -0.51 16 28 S -0.26 -2.42 21.70 -107.50 -2.33 -4.75 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.53 8.06 -51.93 -0.42 0.12 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.41 4.52 5.71 -40.82 -0.23 4.29 16 35 H 0.41 6.48 8.29 -40.82 -0.34 6.15 16 36 H 0.18 4.39 5.92 -52.48 -0.31 4.08 16 37 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.15 2.89 8.06 -52.49 -0.42 2.47 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 41 H 0.09 0.92 7.26 -51.93 -0.38 0.55 16 42 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -31.77 359.37 -7.76 -39.52 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -5.30 Total: 14.09 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.35 Total: 0.43 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.67 Total: -49.98 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.16 Total: -18.25 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.33 Total: -4.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.77 -7.76 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120995250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.303 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds