Wall clock time and date at job start Tue Mar 31 2020 20:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.08998 * 110.72092 * 215.58609 * 4 2 1 6 6 N 1.46901 * 110.72171 * 338.68693 * 4 2 1 7 7 C 1.46897 * 111.00234 * 205.00215 * 6 4 2 8 8 C 1.50696 * 109.47157 * 179.97438 * 7 6 4 9 9 O 1.21297 * 120.00048 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00191 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00312 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99810 * 0.02562 * 11 10 8 13 13 C 1.38949 * 119.99931 * 180.02562 * 11 10 8 14 14 N 1.31417 * 119.99588 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00195 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47314 * 90.00119 * 15 13 11 17 17 H 1.48499 * 109.47063 * 210.00350 * 15 13 11 18 18 H 1.48497 * 109.46934 * 329.99785 * 15 13 11 19 19 C 1.55155 * 102.94237 * 97.22462 * 4 2 1 20 20 C 1.54907 * 101.58304 * 35.50235 * 19 4 2 21 21 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 22 22 C 1.34776 * 125.64681 * 59.49736 * 21 2 1 23 23 O 1.21612 * 120.00142 * 0.02562 * 22 21 2 24 24 C 1.47258 * 119.99977 * 180.02562 * 22 21 2 25 25 N 1.30560 * 125.53727 * 359.69565 * 24 22 21 26 26 C 1.30709 * 115.90050 * 179.81596 * 25 24 22 27 27 C 1.34227 * 115.78736 * 0.47999 * 26 25 24 28 28 S 1.71077 * 109.09176 * 359.74272 * 27 26 25 29 29 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 30 30 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 31 31 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 32 32 H 1.00898 * 111.00118 * 81.03668 * 6 4 2 33 33 H 1.09004 * 109.46488 * 299.99557 * 7 6 4 34 34 H 1.08993 * 109.47806 * 59.99491 * 7 6 4 35 35 H 0.97006 * 119.99573 * 0.02562 * 10 8 7 36 36 H 0.97004 * 119.99569 * 179.97438 * 14 13 11 37 37 H 1.09001 * 111.00737 * 153.57844 * 19 4 2 38 38 H 1.09002 * 111.00511 * 277.42931 * 19 4 2 39 39 H 1.09001 * 110.36600 * 81.82996 * 20 19 4 40 40 H 1.09002 * 110.36889 * 204.15108 * 20 19 4 41 41 H 1.07998 * 122.10472 * 180.22088 * 26 25 24 42 42 H 1.07996 * 125.45924 * 179.73870 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 2.9657 -0.2809 1.6185 6 7 1.0280 -0.7960 2.2930 7 6 1.6387 -0.9421 3.6210 8 6 0.5570 -0.9871 4.6692 9 8 -0.6082 -0.9051 4.3422 10 7 0.8842 -1.1186 5.9701 11 6 -0.0999 -1.1590 6.9237 12 1 -1.1374 -1.0860 6.6326 13 6 0.2375 -1.2940 8.2649 14 7 -0.7059 -1.3323 9.1790 15 14 2.0318 -1.4196 8.7685 16 1 2.5699 -0.0598 9.0265 17 1 2.1435 -2.2384 10.0023 18 1 2.8085 -2.0605 7.6772 19 6 2.3519 -2.1685 0.6953 20 6 2.8568 -1.8508 -0.7343 21 7 2.0301 -0.7157 -1.1830 22 6 1.7744 -0.3884 -2.4652 23 8 1.0754 0.5737 -2.7195 24 6 2.3416 -1.1959 -3.5583 25 7 3.1073 -2.2429 -3.4098 26 6 3.5030 -2.8219 -4.5129 27 6 3.0777 -2.2571 -5.6539 28 16 2.1034 -0.9019 -5.2782 29 1 -0.3633 0.4979 0.8990 30 1 -0.3633 -1.0275 -0.0183 31 1 -0.3634 0.5296 -0.8807 32 1 0.3650 -1.5358 2.1165 33 1 2.2171 -1.8654 3.6553 34 1 2.2960 -0.0943 3.8140 35 1 1.8160 -1.1838 6.2316 36 1 -0.4704 -1.4268 10.1153 37 1 3.1271 -2.6601 1.2831 38 1 1.4452 -2.7727 0.6641 39 1 3.9091 -1.5676 -0.7108 40 1 2.7088 -2.7099 -1.3886 41 1 4.1359 -3.6970 -4.5067 42 1 3.3129 -2.6026 -6.6497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179765806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:47 Heat of formation + Delta-G solvation = 4.378967 kcal Electronic energy + Delta-G solvation = -26347.599825 eV Core-core repulsion = 22455.518364 eV Total energy + Delta-G solvation = -3892.081461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84344 -39.73742 -38.58617 -37.83287 -34.85606 -33.86717 -31.85286 -31.61992 -31.06871 -30.15174 -27.14392 -26.42518 -25.21227 -23.80175 -23.27255 -21.87121 -20.60930 -19.45815 -19.22216 -18.54316 -18.33782 -17.29126 -16.29917 -16.09859 -16.01384 -15.66246 -15.22557 -15.03948 -14.80862 -14.30012 -13.98344 -13.90427 -13.76122 -13.40572 -13.22902 -12.98316 -12.80093 -12.52867 -12.39490 -12.23050 -12.00278 -11.96781 -11.64741 -11.49918 -11.16875 -11.00091 -10.85711 -10.60608 -10.50767 -10.17387 -10.06926 -9.98099 -9.57982 -9.42508 -8.85599 -8.61042 -8.20467 -8.15195 -6.31539 -3.83042 -0.19962 0.67462 1.24426 1.94331 2.68338 2.86010 3.01302 3.06301 3.14521 3.62090 3.72827 3.97964 4.09667 4.37577 4.38655 4.60103 4.63572 4.82719 4.86187 4.93961 5.05388 5.15383 5.22293 5.38932 5.47309 5.51678 5.61879 5.63783 5.68306 5.77071 5.83709 5.92079 5.94722 6.10616 6.35495 6.57088 6.98762 7.03255 7.18543 7.49223 7.57478 7.77111 8.13956 8.58911 8.94503 9.41757 9.81696 10.81543 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.032613 B = 0.002021 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.343694 B =13850.762655 C =14369.438146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.082 0.918 4 C 0.082 3.918 5 H 0.095 0.905 6 N -0.653 5.653 7 C 0.048 3.952 8 C 0.449 3.551 9 O -0.564 6.564 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.881 3.119 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 C -0.169 4.169 20 C 0.104 3.896 21 N -0.589 5.589 22 C 0.610 3.390 23 O -0.525 6.525 24 C -0.013 4.013 25 N -0.424 5.424 26 C 0.026 3.974 27 C -0.283 4.283 28 S 0.251 5.749 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.356 0.644 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.178 0.822 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.984 -3.268 -28.386 31.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.100 0.900 4 C -0.030 4.030 5 H 0.113 0.887 6 N -0.285 5.285 7 C -0.085 4.085 8 C 0.235 3.765 9 O -0.446 6.446 10 N -0.230 5.230 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.208 4.208 20 C -0.019 4.019 21 N -0.322 5.322 22 C 0.394 3.606 23 O -0.401 6.401 24 C -0.288 4.288 25 N -0.142 5.142 26 C -0.130 4.130 27 C -0.424 4.424 28 S 0.506 5.494 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.177 0.823 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.195 0.805 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 12.219 -1.390 -28.546 31.083 hybrid contribution 2.515 -2.133 0.493 3.335 sum 14.734 -3.523 -28.054 31.883 Atomic orbital electron populations 1.21970 0.93228 1.02322 1.03660 1.21621 0.96235 0.95560 0.82387 0.89951 1.22616 0.94945 0.94183 0.91253 0.88724 1.60031 1.14966 1.54001 0.99525 1.21750 0.96409 1.00992 0.89350 1.19689 0.89827 0.84017 0.82965 1.90577 1.19722 1.53603 1.80655 1.42204 1.08245 1.66455 1.06079 1.19431 0.90921 1.47502 0.85483 0.86271 1.25051 0.97988 0.97679 0.95523 1.69628 1.32139 1.49022 1.01305 0.86659 0.84660 0.78904 0.79066 1.19601 1.20229 1.19546 1.23624 1.02709 0.98507 0.96008 1.22506 0.94415 0.89746 0.95232 1.48293 1.49327 1.30367 1.04219 1.16266 0.80594 0.83319 0.80449 1.90869 1.38496 1.27902 1.82875 1.27725 1.04224 0.99409 0.97407 1.66975 1.09620 1.06378 1.31212 1.21791 1.02975 1.02605 0.85671 1.26939 1.06814 1.03222 1.05395 1.84150 1.41553 1.22964 1.00746 0.89038 0.93122 0.92043 0.82267 0.93560 0.89319 0.79702 0.91619 0.89602 0.90169 0.91081 0.88312 0.80489 0.79860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.26 37.16 0.31 -1.76 16 2 C 0.15 1.74 3.48 -66.95 -0.23 1.50 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.08 0.89 3.14 -65.88 -0.21 0.69 16 5 H 0.09 0.93 7.82 -51.93 -0.41 0.52 16 6 N -0.65 -9.27 4.40 -106.06 -0.47 -9.74 16 7 C 0.05 0.73 6.03 -4.98 -0.03 0.70 16 8 C 0.45 9.85 7.82 -10.99 -0.09 9.76 16 9 O -0.56 -14.77 15.78 5.54 0.09 -14.69 16 10 N -0.59 -13.74 5.09 -10.96 -0.06 -13.80 16 11 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 12 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 13 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 14 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 15 Si 0.88 19.13 27.74 -169.99 -4.71 14.42 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 19 C -0.17 -1.55 6.67 -24.58 -0.16 -1.71 16 20 C 0.10 0.96 6.12 -2.53 -0.02 0.95 16 21 N -0.59 -6.74 3.08 -164.34 -0.51 -7.24 16 22 C 0.61 7.70 7.62 -12.60 -0.10 7.60 16 23 O -0.53 -7.94 15.84 5.27 0.08 -7.86 16 24 C -0.01 -0.14 7.32 -14.43 -0.11 -0.24 16 25 N -0.42 -3.91 7.62 -11.50 -0.09 -4.00 16 26 C 0.03 0.18 11.24 -19.44 -0.22 -0.04 16 27 C -0.28 -1.56 11.09 29.32 0.33 -1.23 16 28 S 0.25 1.91 23.03 -107.50 -2.48 -0.57 16 29 H 0.09 1.36 7.40 -51.93 -0.38 0.97 16 30 H 0.05 0.67 7.99 -51.93 -0.41 0.26 16 31 H 0.06 0.88 6.76 -51.93 -0.35 0.53 16 32 H 0.36 5.37 7.47 -39.29 -0.29 5.07 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 35 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.79 7.78 -51.93 -0.40 0.39 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.93 6.17 -51.93 -0.32 0.61 16 41 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -33.89 361.33 -8.01 -41.90 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.32 Total: 12.43 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.77 Total: 8.54 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.34 Total: -59.62 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.17 Total: -22.54 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.42 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.48 Total: -0.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.89 -8.01 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179765806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.282 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds