Wall clock time and date at job start Tue Mar 31 2020 20:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 H 1.09007 * 110.00212 * 2 1 4 4 C 1.54333 * 109.78213 * 121.16894 * 2 1 3 5 5 H 1.09001 * 110.66979 * 215.87651 * 4 2 1 6 6 N 1.46502 * 110.84701 * 339.02590 * 4 2 1 7 7 C 1.36935 * 119.99931 * 200.14846 * 6 4 2 8 8 H 1.08005 * 120.00025 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99994 * 180.02562 * 7 6 4 10 10 N 1.31615 * 119.99832 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99973 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47263 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46753 * 120.00010 * 11 9 7 14 14 H 1.48497 * 109.47202 * 239.99968 * 11 9 7 15 15 C 1.55156 * 103.02551 * 97.49509 * 4 2 1 16 16 C 1.54911 * 101.57846 * 35.30562 * 15 4 2 17 17 N 1.47028 * 109.88486 * 238.90617 * 2 1 3 18 18 C 1.34777 * 125.64354 * 59.55412 * 17 2 1 19 19 O 1.21283 * 120.00463 * 359.72563 * 18 17 2 20 20 C 1.50700 * 119.99675 * 179.44686 * 18 17 2 21 21 N 1.46499 * 109.47257 * 180.27849 * 20 18 17 22 22 C 1.34775 * 120.00181 * 179.97438 * 21 20 18 23 23 O 1.21628 * 119.99991 * 0.02562 * 22 21 20 24 24 C 1.47273 * 119.99903 * 180.02562 * 22 21 20 25 25 C 1.35204 * 123.13996 * 179.73858 * 24 22 21 26 26 S 1.70938 * 108.82750 * 179.86852 * 25 24 22 27 27 C 1.70768 * 91.12897 * 0.32686 * 26 25 24 28 28 N 1.28652 * 110.56084 * 359.80501 * 27 26 25 29 29 H 1.09006 * 109.47592 * 179.64365 * 1 2 3 30 30 H 1.08998 * 109.47403 * 299.63762 * 1 2 3 31 31 H 1.08998 * 109.47610 * 59.64025 * 1 2 3 32 32 H 0.96990 * 120.00236 * 20.14832 * 6 4 2 33 33 H 0.97005 * 119.99639 * 179.97438 * 10 9 7 34 34 H 1.09001 * 111.00218 * 277.24015 * 15 4 2 35 35 H 1.08997 * 111.03976 * 153.39772 * 15 4 2 36 36 H 1.08998 * 110.36692 * 204.15432 * 16 15 4 37 37 H 1.09003 * 110.36327 * 81.83254 * 16 15 4 38 38 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 39 39 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 40 40 H 0.97002 * 119.99778 * 0.02562 * 21 20 18 41 41 H 1.08008 * 125.58805 * 359.97438 * 25 24 22 42 42 H 1.08002 * 124.72452 * 179.84353 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7516 1.2426 5 1 2.9600 -0.2829 1.6224 6 7 1.0257 -0.8102 2.2862 7 6 1.3838 -1.0488 3.5862 8 1 2.4231 -1.1935 3.8422 9 6 0.4111 -1.1048 4.5750 10 7 -0.8552 -0.9280 4.2631 11 14 0.8996 -1.4310 6.3483 12 1 2.3732 -1.5928 6.4340 13 1 0.4775 -0.2874 7.1963 14 1 0.2364 -2.6715 6.8242 15 6 2.3561 -2.1698 0.6914 16 6 2.8611 -1.8465 -0.7370 17 7 2.0300 -0.7140 -1.1840 18 6 1.7752 -0.3844 -2.4657 19 8 1.0745 0.5729 -2.7180 20 6 2.3661 -1.2016 -3.5856 21 7 1.9489 -0.6400 -4.8727 22 6 2.3604 -1.2108 -6.0222 23 8 3.0777 -2.1925 -5.9909 24 6 1.9414 -0.6459 -7.3161 25 6 2.3203 -1.1637 -8.5062 26 16 1.6262 -0.2314 -9.7596 27 6 0.8784 0.8011 -8.6234 28 7 1.1561 0.4291 -7.4235 29 1 -0.3634 -1.0277 -0.0064 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 0.0925 -0.6799 2.0564 33 1 -1.5350 -0.9675 4.9540 34 1 1.4521 -2.7778 0.6578 35 1 3.1325 -2.6599 1.2788 36 1 2.7176 -2.7048 -1.3934 37 1 3.9122 -1.5588 -0.7116 38 1 3.4538 -1.1810 -3.5157 39 1 2.0165 -2.2310 -3.5079 40 1 1.3771 0.1432 -4.8977 41 1 2.9559 -2.0262 -8.6426 42 1 0.2581 1.6481 -8.8767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179864898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:07 Heat of formation + Delta-G solvation = 3.387854 kcal Electronic energy + Delta-G solvation = -26233.707890 eV Core-core repulsion = 22341.583451 eV Total energy + Delta-G solvation = -3892.124439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89172 -40.13419 -38.85025 -37.61935 -34.65938 -34.26082 -31.83397 -31.12814 -30.77268 -29.48348 -27.98485 -25.81917 -25.25495 -23.60165 -22.98065 -22.35199 -20.26060 -19.83151 -19.39062 -18.64286 -17.59590 -17.18283 -16.80938 -16.27667 -15.99856 -15.75070 -15.54007 -14.95167 -14.83922 -14.41766 -14.12397 -13.87539 -13.77161 -13.72870 -13.22440 -13.03213 -12.57407 -12.51834 -12.42049 -12.08141 -11.82094 -11.56465 -11.27925 -11.00612 -10.85627 -10.55320 -10.49998 -10.32043 -10.24578 -10.20028 -10.01183 -9.82575 -9.63032 -9.58938 -9.31200 -8.98636 -8.51863 -7.05597 -5.84446 -3.14433 0.08030 0.78747 1.13738 1.58107 2.58034 2.63526 3.03361 3.25391 3.39330 3.45228 3.47416 3.70929 4.36835 4.52616 4.54265 4.74795 4.85297 4.96948 5.10446 5.15409 5.18943 5.35135 5.42784 5.49355 5.56584 5.59422 5.75817 5.95784 6.03571 6.07832 6.18182 6.27414 6.51141 6.52934 6.64817 6.77853 6.88568 6.94712 7.31111 7.60036 7.64415 7.87911 8.12972 8.33989 9.45791 10.00409 10.35241 11.38014 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.037843 B = 0.001884 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.724751 B =14859.313978 C =15359.905640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.074 0.926 4 C 0.173 3.827 5 H 0.064 0.936 6 N -0.717 5.717 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.153 4.153 16 C 0.093 3.907 17 N -0.603 5.603 18 C 0.521 3.479 19 O -0.538 6.538 20 C 0.103 3.897 21 N -0.698 5.698 22 C 0.597 3.403 23 O -0.537 6.537 24 C 0.007 3.993 25 C -0.221 4.221 26 S 0.211 5.789 27 C 0.001 3.999 28 N -0.439 5.439 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.422 0.578 41 H 0.191 0.809 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 0.593 -28.296 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.092 0.908 4 C 0.061 3.939 5 H 0.082 0.918 6 N -0.361 5.361 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.194 4.194 16 C -0.031 4.031 17 N -0.337 5.337 18 C 0.309 3.691 19 O -0.416 6.416 20 C -0.024 4.024 21 N -0.352 5.352 22 C 0.380 3.620 23 O -0.414 6.414 24 C -0.128 4.128 25 C -0.363 4.363 26 S 0.466 5.534 27 C -0.299 4.299 28 N -0.153 5.153 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.262 0.738 41 H 0.208 0.792 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.611 0.711 -28.847 29.604 hybrid contribution -0.082 -0.246 1.829 1.848 sum 6.528 0.465 -27.018 27.799 Atomic orbital electron populations 1.22007 0.94397 1.02534 1.02783 1.21880 0.95531 0.95772 0.84229 0.90837 1.21184 0.93262 0.92056 0.87362 0.91838 1.42676 1.05117 1.85275 1.03017 1.19279 0.93039 1.41210 0.83978 0.90968 1.24768 0.95306 1.02478 0.98203 1.69669 0.99293 1.56328 1.32528 0.86099 0.77530 0.77431 0.84974 1.20498 1.21834 1.21849 1.23559 1.01809 1.01327 0.92755 1.22492 0.94589 0.88339 0.97634 1.48525 1.49739 1.30705 1.04717 1.19958 0.81299 0.85110 0.82774 1.90696 1.38916 1.29043 1.82956 1.21104 1.01194 0.98113 0.81965 1.45527 1.52240 1.33577 1.03899 1.16980 0.79957 0.82833 0.82226 1.90829 1.37547 1.25897 1.87142 1.20404 1.01859 0.95699 0.94885 1.26658 1.06720 1.07056 0.95911 1.82985 1.39852 1.19641 1.10918 1.28525 1.05249 1.05366 0.90743 1.66985 1.12601 1.11926 1.23785 0.92446 0.90120 0.92085 0.77090 0.93406 0.90561 0.90395 0.91010 0.91200 0.88172 0.88147 0.73831 0.79153 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 7.93 37.15 0.29 -2.64 16 2 C 0.13 2.22 3.49 -66.95 -0.23 1.99 16 3 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 4 C 0.17 3.23 3.45 -66.09 -0.23 3.00 16 5 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 6 N -0.72 -17.02 5.02 -51.64 -0.26 -17.28 16 7 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 10 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 11 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C -0.15 -2.41 6.77 -24.58 -0.17 -2.58 16 16 C 0.09 1.15 6.69 -2.53 -0.02 1.13 16 17 N -0.60 -8.87 3.08 -163.01 -0.50 -9.37 16 18 C 0.52 7.68 7.70 -10.98 -0.08 7.60 16 19 O -0.54 -9.48 14.56 5.55 0.08 -9.39 16 20 C 0.10 1.25 5.16 -5.19 -0.03 1.22 16 21 N -0.70 -8.87 5.52 -62.61 -0.35 -9.22 16 22 C 0.60 7.68 7.80 -12.59 -0.10 7.58 16 23 O -0.54 -7.90 16.71 5.25 0.09 -7.82 16 24 C 0.01 0.07 6.70 -84.52 -0.57 -0.49 16 25 C -0.22 -1.78 10.62 29.65 0.31 -1.46 16 26 S 0.21 1.01 22.96 -107.50 -2.47 -1.45 16 27 C 0.00 0.01 12.17 51.43 0.63 0.63 16 28 N -0.44 -4.45 10.12 -12.36 -0.13 -4.57 16 29 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 30 H 0.08 1.62 6.73 -51.93 -0.35 1.27 16 31 H 0.06 1.12 6.74 -51.93 -0.35 0.77 16 32 H 0.39 9.85 4.94 -40.82 -0.20 9.65 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.75 7.49 -51.93 -0.39 0.36 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.08 8.14 -51.92 -0.42 0.65 16 39 H 0.10 1.13 7.85 -51.93 -0.41 0.72 16 40 H 0.42 5.63 6.96 -40.82 -0.28 5.35 16 41 H 0.19 1.33 8.03 -52.48 -0.42 0.90 16 42 H 0.21 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -33.31 365.69 -8.08 -41.39 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -5.33 Total: 13.11 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -0.43 Total: 8.96 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -0.51 Total: -67.07 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.17 Total: -17.21 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.47 Total: -1.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.31 -8.08 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179864898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.778 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds