Wall clock time and date at job start Tue Mar 31 2020 20:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 H 1.09007 * 110.00212 * 2 1 4 4 C 1.54333 * 109.78213 * 121.16894 * 2 1 3 5 5 H 1.09001 * 110.66979 * 215.87651 * 4 2 1 6 6 N 1.46502 * 110.84701 * 339.02590 * 4 2 1 7 7 C 1.36935 * 119.99931 * 200.14846 * 6 4 2 8 8 H 1.08005 * 120.00025 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99994 * 180.02562 * 7 6 4 10 10 N 1.31615 * 119.99832 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99973 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47263 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46753 * 120.00010 * 11 9 7 14 14 H 1.48497 * 109.47202 * 239.99968 * 11 9 7 15 15 C 1.55156 * 103.02551 * 97.49509 * 4 2 1 16 16 C 1.54911 * 101.57846 * 35.30562 * 15 4 2 17 17 N 1.47028 * 109.88486 * 238.90617 * 2 1 3 18 18 C 1.34777 * 125.64354 * 59.55412 * 17 2 1 19 19 O 1.21283 * 120.00463 * 359.72563 * 18 17 2 20 20 C 1.50700 * 119.99675 * 179.44686 * 18 17 2 21 21 N 1.46499 * 109.47257 * 180.27849 * 20 18 17 22 22 C 1.34775 * 120.00181 * 179.97438 * 21 20 18 23 23 O 1.21628 * 119.99991 * 0.02562 * 22 21 20 24 24 C 1.47273 * 119.99903 * 180.02562 * 22 21 20 25 25 C 1.35204 * 123.13996 * 179.73858 * 24 22 21 26 26 S 1.70938 * 108.82750 * 179.86852 * 25 24 22 27 27 C 1.70768 * 91.12897 * 0.32686 * 26 25 24 28 28 N 1.28652 * 110.56084 * 359.80501 * 27 26 25 29 29 H 1.09006 * 109.47592 * 179.64365 * 1 2 3 30 30 H 1.08998 * 109.47403 * 299.63762 * 1 2 3 31 31 H 1.08998 * 109.47610 * 59.64025 * 1 2 3 32 32 H 0.96990 * 120.00236 * 20.14832 * 6 4 2 33 33 H 0.97005 * 119.99639 * 179.97438 * 10 9 7 34 34 H 1.09001 * 111.00218 * 277.24015 * 15 4 2 35 35 H 1.08997 * 111.03976 * 153.39772 * 15 4 2 36 36 H 1.08998 * 110.36692 * 204.15432 * 16 15 4 37 37 H 1.09003 * 110.36327 * 81.83254 * 16 15 4 38 38 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 39 39 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 40 40 H 0.97002 * 119.99778 * 0.02562 * 21 20 18 41 41 H 1.08008 * 125.58805 * 359.97438 * 25 24 22 42 42 H 1.08002 * 124.72452 * 179.84353 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7516 1.2426 5 1 2.9600 -0.2829 1.6224 6 7 1.0257 -0.8102 2.2862 7 6 1.3838 -1.0488 3.5862 8 1 2.4231 -1.1935 3.8422 9 6 0.4111 -1.1048 4.5750 10 7 -0.8552 -0.9280 4.2631 11 14 0.8996 -1.4310 6.3483 12 1 2.3732 -1.5928 6.4340 13 1 0.4775 -0.2874 7.1963 14 1 0.2364 -2.6715 6.8242 15 6 2.3561 -2.1698 0.6914 16 6 2.8611 -1.8465 -0.7370 17 7 2.0300 -0.7140 -1.1840 18 6 1.7752 -0.3844 -2.4657 19 8 1.0745 0.5729 -2.7180 20 6 2.3661 -1.2016 -3.5856 21 7 1.9489 -0.6400 -4.8727 22 6 2.3604 -1.2108 -6.0222 23 8 3.0777 -2.1925 -5.9909 24 6 1.9414 -0.6459 -7.3161 25 6 2.3203 -1.1637 -8.5062 26 16 1.6262 -0.2314 -9.7596 27 6 0.8784 0.8011 -8.6234 28 7 1.1561 0.4291 -7.4235 29 1 -0.3634 -1.0277 -0.0064 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 0.0925 -0.6799 2.0564 33 1 -1.5350 -0.9675 4.9540 34 1 1.4521 -2.7778 0.6578 35 1 3.1325 -2.6599 1.2788 36 1 2.7176 -2.7048 -1.3934 37 1 3.9122 -1.5588 -0.7116 38 1 3.4538 -1.1810 -3.5157 39 1 2.0165 -2.2310 -3.5079 40 1 1.3771 0.1432 -4.8977 41 1 2.9559 -2.0262 -8.6426 42 1 0.2581 1.6481 -8.8767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179864898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:06 Heat of formation + Delta-G solvation = -21.744383 kcal Electronic energy + Delta-G solvation = -26234.797706 eV Core-core repulsion = 22341.583451 eV Total energy + Delta-G solvation = -3893.214254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77455 -41.22076 -39.73374 -38.91846 -35.97137 -35.66786 -33.54357 -32.15574 -31.77383 -31.00211 -29.09902 -26.80001 -26.53485 -25.31975 -24.06804 -23.35419 -21.25294 -20.99293 -20.16868 -19.79838 -19.43302 -18.16833 -17.82642 -17.35886 -16.92947 -16.78433 -16.67846 -16.30302 -15.93770 -15.66032 -15.55214 -15.04059 -14.92033 -14.62015 -14.35092 -14.27003 -13.92389 -13.74726 -13.53127 -13.22194 -13.03436 -12.95281 -12.91658 -12.88267 -12.57019 -12.06971 -12.00860 -11.61400 -11.54416 -11.47260 -11.01747 -10.92799 -10.84853 -10.74353 -10.42765 -9.95108 -9.75500 -9.00968 -7.93595 -5.22440 -0.48439 0.32506 0.62515 0.88321 1.41563 1.49492 1.50135 1.58038 1.60372 2.22476 2.25014 2.57870 3.10121 3.25447 3.40880 3.73385 3.80801 3.92288 3.93714 4.12988 4.17704 4.21665 4.25690 4.36539 4.37287 4.41262 4.54874 4.64344 4.76907 4.84935 4.85917 5.04300 5.06626 5.21059 5.25333 5.28683 5.49200 5.56270 6.16756 6.28236 6.41308 6.52752 6.91674 6.97126 7.35628 8.09325 8.32441 9.30259 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.037843 B = 0.001884 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.724751 B =14859.313978 C =15359.905640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.136 3.864 3 H 0.070 0.930 4 C 0.165 3.835 5 H 0.069 0.931 6 N -0.733 5.733 7 C -0.235 4.235 8 H 0.083 0.917 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.298 1.298 14 H -0.297 1.297 15 C -0.145 4.145 16 C 0.099 3.901 17 N -0.602 5.602 18 C 0.522 3.478 19 O -0.571 6.571 20 C 0.111 3.889 21 N -0.702 5.702 22 C 0.594 3.406 23 O -0.563 6.563 24 C -0.027 4.027 25 C -0.233 4.233 26 S 0.304 5.696 27 C -0.009 4.009 28 N -0.477 5.477 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.380 0.620 33 H 0.250 0.750 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.418 0.582 41 H 0.197 0.803 42 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.570 0.057 -30.617 31.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.088 0.912 4 C 0.055 3.945 5 H 0.087 0.913 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.101 0.899 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.186 1.186 13 H -0.226 1.226 14 H -0.224 1.224 15 C -0.186 4.186 16 C -0.023 4.023 17 N -0.335 5.335 18 C 0.311 3.689 19 O -0.451 6.451 20 C -0.016 4.016 21 N -0.355 5.355 22 C 0.380 3.620 23 O -0.443 6.443 24 C -0.162 4.162 25 C -0.376 4.376 26 S 0.559 5.441 27 C -0.307 4.307 28 N -0.192 5.192 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.216 0.784 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.257 0.743 41 H 0.214 0.786 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.585 0.163 -31.215 32.374 hybrid contribution -0.657 -0.030 2.341 2.432 sum 7.927 0.134 -28.874 29.943 Atomic orbital electron populations 1.21826 0.95673 1.01421 1.01414 1.21609 0.94351 0.95845 0.85014 0.91200 1.21401 0.92101 0.94272 0.86748 0.91285 1.42858 1.05725 1.85485 1.03473 1.19689 0.93303 1.38596 0.85082 0.89947 1.25560 0.95420 1.03908 1.02104 1.69829 1.00278 1.58840 1.33250 0.85079 0.77958 0.76442 0.80297 1.18637 1.22571 1.22425 1.23364 1.01509 0.98659 0.95029 1.22650 0.95407 0.88506 0.95718 1.48506 1.49905 1.31047 1.04079 1.20413 0.80618 0.84801 0.83063 1.90685 1.40376 1.30626 1.83415 1.21133 1.02010 0.97823 0.80642 1.45594 1.52223 1.33476 1.04235 1.17325 0.79351 0.82428 0.82933 1.90793 1.38839 1.27008 1.87643 1.20247 1.04095 0.97254 0.94583 1.26958 1.06444 1.07505 0.96706 1.82675 1.36978 1.16707 1.07693 1.29100 1.04939 1.06191 0.90501 1.66970 1.13792 1.12507 1.25949 0.93393 0.92407 0.92318 0.78372 0.94161 0.92536 0.89156 0.88091 0.88243 0.86269 0.86886 0.74293 0.78628 0.74703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 7.93 71.98 0.57 -4.97 16 2 C 0.14 4.66 3.49 45.34 0.16 4.81 16 3 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 4 C 0.16 6.03 3.45 46.18 0.16 6.18 16 5 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 6 N -0.73 -35.21 5.02 -317.31 -1.59 -36.80 16 7 C -0.23 -12.43 9.98 84.03 0.84 -11.59 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 10 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 11 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 12 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 13 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 14 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 15 C -0.14 -4.29 6.77 31.99 0.22 -4.08 16 16 C 0.10 2.15 6.69 86.86 0.58 2.73 16 17 N -0.60 -16.81 3.08 -788.05 -2.43 -19.24 16 18 C 0.52 14.84 7.70 87.66 0.68 15.52 16 19 O -0.57 -20.15 14.56 -3.04 -0.04 -20.19 16 20 C 0.11 2.49 5.16 85.63 0.44 2.93 16 21 N -0.70 -17.57 5.52 -470.24 -2.60 -20.17 16 22 C 0.59 15.13 7.80 86.62 0.68 15.81 16 23 O -0.56 -16.29 16.71 -4.12 -0.07 -16.36 16 24 C -0.03 -0.56 6.70 40.56 0.27 -0.29 16 25 C -0.23 -3.41 10.62 67.12 0.71 -2.70 16 26 S 0.30 2.04 22.96 -56.49 -1.30 0.74 16 27 C -0.01 -0.09 12.17 130.71 1.59 1.50 16 28 N -0.48 -9.32 10.12 -193.02 -1.95 -11.27 16 29 H 0.05 1.88 8.05 -2.38 -0.02 1.86 16 30 H 0.06 2.46 6.73 -2.39 -0.02 2.44 16 31 H 0.06 2.24 6.74 -2.39 -0.02 2.22 16 32 H 0.38 19.83 4.94 -92.72 -0.46 19.37 16 33 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.10 1.70 7.49 -2.39 -0.02 1.68 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.11 2.29 7.85 -2.39 -0.02 2.27 16 40 H 0.42 11.28 6.96 -92.71 -0.64 10.64 16 41 H 0.20 2.48 8.03 -2.91 -0.02 2.46 16 42 H 0.24 0.70 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -74.58 365.69 -0.34 -74.92 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -0.03 Total: 37.62 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 7.36 Total: 21.97 kcal Atomic # 7 Polarization: -137.69 SS G_CDS: -8.29 Total: -145.98 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.11 Total: -36.55 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.30 Total: 0.74 kcal Total: -74.58 -0.34 -74.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179864898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.178 kcal (2) G-P(sol) polarization free energy of solvation -74.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds