Wall clock time and date at job start Tue Mar 31 2020 20:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.26921 * 2 1 4 4 C 1.53989 * 110.31138 * 237.91417 * 2 1 3 5 5 N 1.47900 * 107.05923 * 242.30488 * 4 2 1 6 6 C 1.46896 * 111.00040 * 214.15602 * 5 4 2 7 7 C 1.50700 * 109.46942 * 169.99708 * 6 5 4 8 8 O 1.21293 * 120.00282 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00075 * 179.97438 * 7 6 5 10 10 C 1.37104 * 120.00173 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99666 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00001 * 180.27893 * 10 9 7 13 13 N 1.31414 * 119.99893 * 359.72318 * 12 10 9 14 14 Si 1.86801 * 119.99957 * 179.72309 * 12 10 9 15 15 H 1.48501 * 109.46896 * 89.99808 * 14 12 10 16 16 H 1.48504 * 109.46757 * 209.99794 * 14 12 10 17 17 H 1.48492 * 109.47185 * 329.99590 * 14 12 10 18 18 C 1.48541 * 105.81760 * 334.66922 * 5 4 2 19 19 C 1.54594 * 110.31157 * 122.19251 * 2 1 3 20 20 H 1.08994 * 110.72075 * 22.33846 * 19 2 1 21 21 N 1.46497 * 110.72240 * 259.23555 * 19 2 1 22 22 C 1.34778 * 119.99942 * 155.00147 * 21 19 2 23 23 O 1.21633 * 119.99844 * 359.97438 * 22 21 19 24 24 C 1.47103 * 120.00262 * 179.97438 * 22 21 19 25 25 C 1.38389 * 127.99815 * 179.97438 * 24 22 21 26 26 C 1.37577 * 111.25967 * 180.02562 * 25 24 22 27 27 N 1.29557 * 117.95284 * 359.97438 * 26 25 24 28 28 S 1.56310 * 110.37685 * 359.69938 * 27 26 25 29 29 H 1.09007 * 109.46675 * 180.63252 * 1 2 3 30 30 H 1.08997 * 109.47333 * 300.63348 * 1 2 3 31 31 H 1.09002 * 109.47517 * 60.63895 * 1 2 3 32 32 H 1.09001 * 109.91878 * 122.95214 * 4 2 1 33 33 H 1.08999 * 109.91571 * 1.65573 * 4 2 1 34 34 H 1.08994 * 109.47346 * 50.00014 * 6 5 4 35 35 H 1.08998 * 109.47279 * 289.99686 * 6 5 4 36 36 H 0.97000 * 120.00140 * 0.02562 * 9 7 6 37 37 H 0.97004 * 119.99542 * 180.02562 * 13 12 10 38 38 H 1.08995 * 110.66700 * 157.64545 * 18 5 4 39 39 H 1.08998 * 110.66599 * 280.77270 * 18 5 4 40 40 H 0.97000 * 120.00227 * 334.99668 * 21 19 2 41 41 H 1.07994 * 124.36659 * 0.02660 * 25 24 22 42 42 H 1.08006 * 121.02205 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0645 -0.7671 -1.2235 5 7 2.8314 -1.9228 -0.7100 6 6 3.9752 -2.2245 -1.5809 7 6 4.8666 -3.2357 -0.9072 8 8 4.5777 -3.6627 0.1907 9 7 5.9848 -3.6657 -1.5246 10 6 6.7955 -4.5861 -0.9119 11 1 6.5382 -4.9663 0.0657 12 6 7.9513 -5.0250 -1.5459 13 7 8.2646 -4.5620 -2.7352 14 14 9.0599 -6.2732 -0.7077 15 1 8.6315 -7.6452 -1.0812 16 1 10.4639 -6.0578 -1.1409 17 1 8.9655 -6.1089 0.7651 18 6 3.2856 -1.5352 0.6501 19 6 2.0666 -0.7724 1.2269 20 1 1.3162 -1.4674 1.6035 21 7 2.4866 0.1551 2.2803 22 6 2.5032 -0.2484 3.5661 23 8 2.1691 -1.3825 3.8520 24 6 2.9254 0.6826 4.6239 25 6 3.0042 0.4465 5.9852 26 6 3.4420 1.5623 6.6605 27 7 3.7075 2.6253 5.9692 28 16 3.4577 2.3622 4.4488 29 1 -0.3633 -1.0277 0.0113 30 1 -0.3634 0.5236 0.8842 31 1 -0.3634 0.5039 -0.8956 32 1 2.7162 -0.1207 -1.8115 33 1 1.2327 -1.1159 -1.8356 34 1 4.5395 -1.3112 -1.7691 35 1 3.6151 -2.6303 -2.5262 36 1 6.2161 -3.3240 -2.4024 37 1 9.0714 -4.8687 -3.1779 38 1 3.5049 -2.4191 1.2489 39 1 4.1564 -0.8821 0.5933 40 1 2.7527 1.0596 2.0524 41 1 2.7544 -0.4925 6.4565 42 1 3.5608 1.5523 7.7340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207222570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:01 Heat of formation + Delta-G solvation = -12.689046 kcal Electronic energy + Delta-G solvation = -26547.286351 eV Core-core repulsion = 22654.464766 eV Total energy + Delta-G solvation = -3892.821585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35449 -39.53528 -38.72907 -37.60273 -34.62003 -33.90599 -32.67780 -31.79139 -31.26399 -29.02955 -27.42795 -26.23806 -25.23639 -23.98997 -22.46391 -21.03906 -20.79945 -19.99317 -19.24163 -18.78037 -17.87538 -17.26183 -16.54186 -16.02226 -15.52106 -15.43526 -15.05007 -14.68434 -14.57977 -14.26983 -14.12367 -13.90174 -13.73051 -13.59025 -13.51683 -13.20570 -12.80903 -12.36529 -11.93948 -11.76040 -11.68044 -11.55114 -11.36374 -11.28279 -11.12624 -11.06824 -10.85192 -10.65511 -10.38016 -10.22780 -10.22001 -10.01917 -9.50647 -9.23141 -9.13212 -8.38887 -8.02664 -7.90648 -6.42537 -3.83192 -0.02348 0.93277 1.52069 1.90584 2.78233 2.92591 3.17908 3.26668 3.32803 3.88514 4.06814 4.26542 4.32303 4.53486 4.66027 4.67542 4.73422 4.80253 5.05424 5.24226 5.30361 5.32789 5.35793 5.44766 5.50033 5.50917 5.68891 5.79612 5.82931 5.89999 5.92672 6.06247 6.11374 6.13343 6.25115 6.33435 6.69240 7.14517 7.23808 7.25898 7.55177 7.94578 8.05498 8.60868 9.17570 9.52802 10.04735 10.75161 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.002889 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.904688 B = 9690.975629 C =11461.585104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 H 0.078 0.922 4 C 0.037 3.963 5 N -0.492 5.492 6 C 0.037 3.963 7 C 0.440 3.560 8 O -0.577 6.577 9 N -0.562 5.562 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.030 3.970 19 C 0.141 3.859 20 H 0.110 0.890 21 N -0.714 5.714 22 C 0.595 3.405 23 O -0.510 6.510 24 C -0.262 4.262 25 C -0.110 4.110 26 C 0.060 3.940 27 N -0.519 5.519 28 S 0.412 5.588 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.125 0.875 39 H 0.039 0.961 40 H 0.396 0.604 41 H 0.177 0.823 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.740 16.866 8.272 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.096 0.904 4 C -0.091 4.091 5 N -0.217 5.217 6 C -0.094 4.094 7 C 0.225 3.775 8 O -0.462 6.462 9 N -0.198 5.198 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.098 4.098 19 C 0.036 3.964 20 H 0.127 0.873 21 N -0.365 5.365 22 C 0.379 3.621 23 O -0.385 6.385 24 C -0.396 4.396 25 C -0.145 4.145 26 C -0.133 4.133 27 N -0.348 5.348 28 S 0.566 5.434 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.057 0.943 40 H 0.230 0.770 41 H 0.195 0.805 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.768 17.191 8.289 22.962 hybrid contribution 1.209 -0.705 0.565 1.510 sum -11.558 16.486 8.854 21.995 Atomic orbital electron populations 1.21825 0.93715 1.02686 1.01566 1.22265 0.97027 0.99020 0.94539 0.90405 1.23038 0.98537 0.91479 0.96058 1.64567 1.20766 1.34319 1.02018 1.22115 0.91689 0.98418 0.97214 1.19724 0.83473 0.86583 0.87673 1.90468 1.73710 1.60821 1.21172 1.41847 1.20245 1.38584 1.19140 1.19710 1.01987 1.17782 1.03310 0.87875 1.25258 0.97933 0.98778 0.95932 1.69615 1.26611 1.44213 1.13895 0.85862 0.78693 0.80247 0.79540 1.20340 1.20944 1.19402 1.23861 0.94026 1.00893 0.91006 1.22230 0.97813 0.90653 0.85681 0.87250 1.45820 1.68564 1.16103 1.06008 1.16712 0.77929 0.85996 0.81431 1.90884 1.46922 1.18569 1.82139 1.26917 1.11672 1.02401 0.98643 1.22177 0.99577 1.01218 0.91557 1.22323 1.00775 0.87219 1.02965 1.72243 1.24521 1.31124 1.06931 1.81593 1.51929 1.02924 1.06959 0.91674 0.92714 0.92323 0.93605 0.89859 0.93321 0.88990 0.77476 0.91872 0.85717 0.94309 0.76985 0.80532 0.79832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.89 37.16 0.33 -0.87 16 2 C -0.11 -1.09 3.32 -89.27 -0.30 -1.38 16 3 H 0.08 0.63 7.75 -51.92 -0.40 0.23 16 4 C 0.04 0.44 6.36 -2.76 -0.02 0.42 16 5 N -0.49 -8.08 5.26 -231.90 -1.22 -9.30 16 6 C 0.04 0.66 5.52 -4.98 -0.03 0.63 16 7 C 0.44 10.34 7.49 -10.98 -0.08 10.26 16 8 O -0.58 -15.47 13.09 5.55 0.07 -15.40 16 9 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 10 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 14 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.03 0.52 4.98 -1.90 -0.01 0.51 16 19 C 0.14 1.84 2.98 -66.07 -0.20 1.64 16 20 H 0.11 1.63 7.26 -51.93 -0.38 1.25 16 21 N -0.71 -8.02 5.17 -53.19 -0.28 -8.30 16 22 C 0.60 7.89 7.80 -12.66 -0.10 7.79 16 23 O -0.51 -8.83 16.61 5.25 0.09 -8.74 16 24 C -0.26 -2.80 6.76 -35.93 -0.24 -3.05 16 25 C -0.11 -1.03 10.40 -39.77 -0.41 -1.45 16 26 C 0.06 0.50 11.14 -18.75 -0.21 0.29 16 27 N -0.52 -5.15 11.29 21.63 0.24 -4.91 16 28 S 0.41 3.52 22.81 -107.50 -2.45 1.07 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.50 7.57 -51.93 -0.39 0.10 16 33 H 0.08 0.90 7.68 -51.93 -0.40 0.51 16 34 H 0.05 0.78 7.81 -51.93 -0.41 0.37 16 35 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.13 2.72 5.97 -51.93 -0.31 2.41 16 39 H 0.04 0.66 8.02 -51.93 -0.42 0.25 16 40 H 0.40 3.27 7.77 -40.82 -0.32 2.95 16 41 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.18 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -34.01 366.14 -9.28 -43.29 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.39 Total: 11.83 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.50 Total: 6.84 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.58 Total: -60.56 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.16 Total: -24.14 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.45 Total: 1.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.01 -9.28 -43.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207222570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.603 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds