Wall clock time and date at job start Tue Mar 31 2020 20:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.26852 * 2 1 4 4 C 1.53998 * 110.30623 * 237.91501 * 2 1 3 5 5 N 1.47900 * 107.05419 * 242.20614 * 4 2 1 6 6 C 1.46901 * 110.99996 * 214.15887 * 5 4 2 7 7 C 1.50696 * 109.47275 * 187.27259 * 6 5 4 8 8 O 1.21301 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00286 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00083 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00368 * 359.97438 * 10 9 7 12 12 C 1.38949 * 119.99855 * 179.97438 * 10 9 7 13 13 N 1.31419 * 120.00080 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00100 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46957 * 59.99993 * 14 12 10 16 16 H 1.48497 * 109.47041 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47032 * 300.00004 * 14 12 10 18 18 C 1.48536 * 105.82189 * 334.66788 * 5 4 2 19 19 C 1.54591 * 110.39350 * 122.14651 * 2 1 3 20 20 H 1.08990 * 110.72764 * 22.55929 * 19 2 1 21 21 N 1.46503 * 110.72046 * 259.27329 * 19 2 1 22 22 C 1.34784 * 119.99686 * 160.04560 * 21 19 2 23 23 O 1.21620 * 119.99778 * 0.02562 * 22 21 19 24 24 C 1.47257 * 119.99848 * 179.97438 * 22 21 19 25 25 N 1.30559 * 125.54024 * 180.02562 * 24 22 21 26 26 C 1.30702 * 115.90648 * 180.02562 * 25 24 22 27 27 C 1.34237 * 115.78313 * 359.97438 * 26 25 24 28 28 S 1.71071 * 109.09168 * 359.73009 * 27 26 25 29 29 H 1.09007 * 109.46720 * 180.63469 * 1 2 3 30 30 H 1.08996 * 109.47131 * 300.63210 * 1 2 3 31 31 H 1.08994 * 109.47608 * 60.63651 * 1 2 3 32 32 H 1.08998 * 109.91739 * 122.85446 * 4 2 1 33 33 H 1.08995 * 109.91697 * 1.55630 * 4 2 1 34 34 H 1.09000 * 109.46947 * 307.26924 * 6 5 4 35 35 H 1.08996 * 109.47545 * 67.26885 * 6 5 4 36 36 H 0.97004 * 119.99530 * 359.97438 * 9 7 6 37 37 H 0.96999 * 119.99991 * 180.02562 * 13 12 10 38 38 H 1.09004 * 110.66813 * 157.64005 * 18 5 4 39 39 H 1.09000 * 110.66721 * 280.77504 * 18 5 4 40 40 H 0.96993 * 120.00363 * 340.04927 * 21 19 2 41 41 H 1.08001 * 122.10966 * 179.97438 * 26 25 24 42 42 H 1.07997 * 125.45432 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0645 -0.7672 -1.2237 5 7 2.8333 -1.9215 -0.7101 6 6 3.9769 -2.2222 -1.5818 7 6 4.6286 -3.5040 -1.1312 8 8 4.1845 -4.1075 -0.1773 9 7 5.7056 -3.9794 -1.7874 10 6 6.2989 -5.1453 -1.3771 11 1 5.9035 -5.6826 -0.5278 12 6 7.4089 -5.6356 -2.0540 13 7 7.8897 -4.9820 -3.0878 14 14 8.2177 -7.2238 -1.4945 15 1 7.2335 -8.3332 -1.5684 16 1 9.3739 -7.5275 -2.3755 17 1 8.6892 -7.0727 -0.0944 18 6 3.2883 -1.5325 0.6493 19 6 2.0687 -0.7710 1.2269 20 1 1.3208 -1.4690 1.6027 21 7 2.4884 0.1577 2.2793 22 6 2.6045 -0.2731 3.5512 23 8 2.3612 -1.4329 3.8249 24 6 3.0268 0.6602 4.6090 25 7 3.1747 0.3603 5.8711 26 6 3.5582 1.3379 6.6492 27 6 3.7501 2.5223 6.0473 28 16 3.4223 2.3603 4.3762 29 1 -0.3633 -1.0277 0.0114 30 1 -0.3633 0.5236 0.8842 31 1 -0.3634 0.5039 -0.8956 32 1 2.7147 -0.1203 -1.8125 33 1 1.2326 -1.1174 -1.8347 34 1 3.6311 -2.3323 -2.6096 35 1 4.6996 -1.4082 -1.5268 36 1 6.0610 -3.4966 -2.5500 37 1 8.6644 -5.3245 -3.5605 38 1 3.5092 -2.4158 1.2486 39 1 4.1582 -0.8782 0.5914 40 1 2.6827 1.0825 2.0609 41 1 3.7110 1.2014 7.7096 42 1 4.0652 3.4309 6.5387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209691959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:24 Heat of formation + Delta-G solvation = -7.921621 kcal Electronic energy + Delta-G solvation = -26423.732801 eV Core-core repulsion = 22531.117947 eV Total energy + Delta-G solvation = -3892.614854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.58585 -39.79103 -38.67214 -37.59791 -34.67811 -33.83567 -32.71598 -31.17749 -31.03194 -29.10866 -27.49785 -26.47396 -25.24372 -24.01022 -22.43821 -21.02316 -20.86047 -19.84841 -19.20064 -19.05230 -17.84012 -17.10766 -16.63826 -16.04520 -15.70595 -15.63891 -14.90940 -14.77670 -14.65351 -14.35001 -14.02119 -13.93779 -13.78900 -13.73007 -13.56672 -13.17780 -12.76667 -12.39572 -12.07092 -12.00133 -11.73664 -11.47685 -11.38751 -11.25355 -11.05493 -10.93746 -10.68053 -10.66018 -10.39649 -10.16353 -10.13389 -9.96780 -9.44944 -9.41778 -9.22171 -8.45202 -7.97976 -7.89272 -6.37044 -3.77403 -0.15108 0.74049 1.16401 2.04677 2.51592 2.96863 3.24470 3.29235 3.34546 3.94322 3.99007 4.10739 4.30571 4.41930 4.57677 4.61244 4.65487 4.69500 4.90808 5.11114 5.24553 5.28379 5.30406 5.36759 5.47227 5.57892 5.68025 5.75869 5.81325 5.85178 5.87696 5.97413 6.07036 6.24798 6.31237 6.48508 6.96912 7.13587 7.20497 7.29310 7.60141 7.86504 8.11270 8.67254 9.23546 9.59499 10.12081 10.80848 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012063 B = 0.002675 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.498678 B =10465.812671 C =11965.156977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.079 0.921 4 C 0.038 3.962 5 N -0.488 5.488 6 C 0.038 3.962 7 C 0.444 3.556 8 O -0.573 6.573 9 N -0.566 5.566 10 C -0.297 4.297 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.904 5.904 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.032 3.968 19 C 0.146 3.854 20 H 0.111 0.889 21 N -0.713 5.713 22 C 0.592 3.408 23 O -0.483 6.483 24 C 0.002 3.998 25 N -0.398 5.398 26 C 0.030 3.970 27 C -0.262 4.262 28 S 0.173 5.827 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.391 0.609 37 H 0.271 0.729 38 H 0.108 0.892 39 H 0.041 0.959 40 H 0.396 0.604 41 H 0.182 0.818 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.589 22.680 9.327 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.090 4.090 5 N -0.212 5.212 6 C -0.094 4.094 7 C 0.229 3.771 8 O -0.456 6.456 9 N -0.203 5.203 10 C -0.426 4.426 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.546 5.546 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.097 4.097 19 C 0.042 3.958 20 H 0.129 0.871 21 N -0.366 5.366 22 C 0.373 3.627 23 O -0.355 6.355 24 C -0.274 4.274 25 N -0.114 5.114 26 C -0.127 4.127 27 C -0.403 4.403 28 S 0.427 5.573 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.224 0.776 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.231 0.769 41 H 0.199 0.801 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.313 20.972 9.344 25.595 hybrid contribution 1.712 0.829 0.608 1.997 sum -9.601 21.801 9.951 25.816 Atomic orbital electron populations 1.21835 0.93531 1.02876 1.01662 1.22248 0.97177 0.98956 0.94243 0.90304 1.23010 0.98522 0.91472 0.96028 1.64449 1.20954 1.34238 1.01586 1.22077 0.92202 0.97409 0.97687 1.19713 0.83285 0.87646 0.86498 1.90538 1.64840 1.60711 1.29529 1.41843 1.25927 1.23122 1.29447 1.19657 1.09445 0.99575 1.13954 0.87971 1.25240 0.97152 0.99613 0.95951 1.69607 1.25012 1.39951 1.20049 0.85932 0.78434 0.81505 0.78451 1.19867 1.21028 1.19927 1.23672 0.94643 1.00302 0.91059 1.22154 0.97475 0.90573 0.85603 0.87135 1.45764 1.70164 1.13880 1.06787 1.16694 0.78519 0.86331 0.81176 1.90933 1.46842 1.16376 1.81304 1.27631 1.09030 0.95249 0.95515 1.66636 1.10674 1.32643 1.01462 1.21925 1.01798 0.86828 1.02127 1.26783 1.10160 1.04770 0.98587 1.83790 1.58362 1.09082 1.06093 0.91528 0.92641 0.92193 0.93541 0.89690 0.89115 0.93276 0.77574 0.91910 0.87350 0.94033 0.76917 0.80121 0.79696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.89 37.16 0.33 -0.83 16 2 C -0.11 -1.02 3.32 -89.26 -0.30 -1.31 16 3 H 0.08 0.58 7.72 -51.93 -0.40 0.18 16 4 C 0.04 0.44 6.34 -2.75 -0.02 0.42 16 5 N -0.49 -8.06 4.96 -231.89 -1.15 -9.21 16 6 C 0.04 0.68 5.18 -4.98 -0.03 0.65 16 7 C 0.44 10.69 7.59 -10.99 -0.08 10.60 16 8 O -0.57 -15.97 14.42 5.54 0.08 -15.89 16 9 N -0.57 -14.59 5.29 -10.96 -0.06 -14.65 16 10 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 11 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 12 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 13 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 14 Si 0.93 21.57 29.55 -169.99 -5.02 16.55 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 18 C 0.03 0.53 5.54 -1.89 -0.01 0.52 16 19 C 0.15 1.86 2.89 -66.07 -0.19 1.67 16 20 H 0.11 1.63 7.42 -51.93 -0.39 1.24 16 21 N -0.71 -7.78 5.20 -53.13 -0.28 -8.06 16 22 C 0.59 8.29 7.81 -12.59 -0.10 8.19 16 23 O -0.48 -9.07 16.80 5.26 0.09 -8.98 16 24 C 0.00 0.03 7.46 -14.43 -0.11 -0.08 16 25 N -0.40 -5.17 10.59 -11.50 -0.12 -5.29 16 26 C 0.03 0.26 11.24 -19.44 -0.22 0.04 16 27 C -0.26 -1.70 11.09 29.32 0.33 -1.37 16 28 S 0.17 1.21 22.31 -107.50 -2.40 -1.18 16 29 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.48 7.77 -51.93 -0.40 0.08 16 33 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 34 H 0.09 1.45 8.11 -51.93 -0.42 1.02 16 35 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 36 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 37 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.11 2.31 6.91 -51.93 -0.36 1.95 16 39 H 0.04 0.65 7.85 -51.93 -0.41 0.24 16 40 H 0.40 3.00 7.48 -40.82 -0.31 2.70 16 41 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.19 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -36.14 368.77 -8.65 -44.79 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.44 Total: 10.17 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -0.63 Total: 10.41 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.88 Total: -61.41 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.17 Total: -24.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.40 Total: -1.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.14 -8.65 -44.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209691959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.867 kcal (2) G-P(sol) polarization free energy of solvation -36.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds