Wall clock time and date at job start Tue Mar 31 2020 20:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.26852 * 2 1 4 4 C 1.53998 * 110.30623 * 237.91501 * 2 1 3 5 5 N 1.47900 * 107.05419 * 242.20614 * 4 2 1 6 6 C 1.46901 * 110.99996 * 214.15887 * 5 4 2 7 7 C 1.50696 * 109.47275 * 187.27259 * 6 5 4 8 8 O 1.21301 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00286 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00083 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00368 * 359.97438 * 10 9 7 12 12 C 1.38949 * 119.99855 * 179.97438 * 10 9 7 13 13 N 1.31419 * 120.00080 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00100 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46957 * 59.99993 * 14 12 10 16 16 H 1.48497 * 109.47041 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47032 * 300.00004 * 14 12 10 18 18 C 1.48536 * 105.82189 * 334.66788 * 5 4 2 19 19 C 1.54591 * 110.39350 * 122.14651 * 2 1 3 20 20 H 1.08990 * 110.72764 * 22.55929 * 19 2 1 21 21 N 1.46503 * 110.72046 * 259.27329 * 19 2 1 22 22 C 1.34784 * 119.99686 * 160.04560 * 21 19 2 23 23 O 1.21620 * 119.99778 * 0.02562 * 22 21 19 24 24 C 1.47257 * 119.99848 * 179.97438 * 22 21 19 25 25 N 1.30559 * 125.54024 * 180.02562 * 24 22 21 26 26 C 1.30702 * 115.90648 * 180.02562 * 25 24 22 27 27 C 1.34237 * 115.78313 * 359.97438 * 26 25 24 28 28 S 1.71071 * 109.09168 * 359.73009 * 27 26 25 29 29 H 1.09007 * 109.46720 * 180.63469 * 1 2 3 30 30 H 1.08996 * 109.47131 * 300.63210 * 1 2 3 31 31 H 1.08994 * 109.47608 * 60.63651 * 1 2 3 32 32 H 1.08998 * 109.91739 * 122.85446 * 4 2 1 33 33 H 1.08995 * 109.91697 * 1.55630 * 4 2 1 34 34 H 1.09000 * 109.46947 * 307.26924 * 6 5 4 35 35 H 1.08996 * 109.47545 * 67.26885 * 6 5 4 36 36 H 0.97004 * 119.99530 * 359.97438 * 9 7 6 37 37 H 0.96999 * 119.99991 * 180.02562 * 13 12 10 38 38 H 1.09004 * 110.66813 * 157.64005 * 18 5 4 39 39 H 1.09000 * 110.66721 * 280.77504 * 18 5 4 40 40 H 0.96993 * 120.00363 * 340.04927 * 21 19 2 41 41 H 1.08001 * 122.10966 * 179.97438 * 26 25 24 42 42 H 1.07997 * 125.45432 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0645 -0.7672 -1.2237 5 7 2.8333 -1.9215 -0.7101 6 6 3.9769 -2.2222 -1.5818 7 6 4.6286 -3.5040 -1.1312 8 8 4.1845 -4.1075 -0.1773 9 7 5.7056 -3.9794 -1.7874 10 6 6.2989 -5.1453 -1.3771 11 1 5.9035 -5.6826 -0.5278 12 6 7.4089 -5.6356 -2.0540 13 7 7.8897 -4.9820 -3.0878 14 14 8.2177 -7.2238 -1.4945 15 1 7.2335 -8.3332 -1.5684 16 1 9.3739 -7.5275 -2.3755 17 1 8.6892 -7.0727 -0.0944 18 6 3.2883 -1.5325 0.6493 19 6 2.0687 -0.7710 1.2269 20 1 1.3208 -1.4690 1.6027 21 7 2.4884 0.1577 2.2793 22 6 2.6045 -0.2731 3.5512 23 8 2.3612 -1.4329 3.8249 24 6 3.0268 0.6602 4.6090 25 7 3.1747 0.3603 5.8711 26 6 3.5582 1.3379 6.6492 27 6 3.7501 2.5223 6.0473 28 16 3.4223 2.3603 4.3762 29 1 -0.3633 -1.0277 0.0114 30 1 -0.3633 0.5236 0.8842 31 1 -0.3634 0.5039 -0.8956 32 1 2.7147 -0.1203 -1.8125 33 1 1.2326 -1.1174 -1.8347 34 1 3.6311 -2.3323 -2.6096 35 1 4.6996 -1.4082 -1.5268 36 1 6.0610 -3.4966 -2.5500 37 1 8.6644 -5.3245 -3.5605 38 1 3.5092 -2.4158 1.2486 39 1 4.1582 -0.8782 0.5914 40 1 2.6827 1.0825 2.0609 41 1 3.7110 1.2014 7.7096 42 1 4.0652 3.4309 6.5387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209691959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:23 Heat of formation + Delta-G solvation = -38.942635 kcal Electronic energy + Delta-G solvation = -26425.077973 eV Core-core repulsion = 22531.117947 eV Total energy + Delta-G solvation = -3893.960026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56447 -40.76699 -40.05356 -39.11496 -36.11123 -35.64064 -33.78919 -33.23971 -31.75505 -30.24384 -28.79198 -27.33069 -26.77207 -25.36573 -23.46568 -22.15856 -21.80292 -21.02123 -20.62178 -19.91506 -19.84470 -17.98678 -17.86921 -17.54503 -16.68843 -16.61851 -16.52547 -16.17376 -15.91272 -15.76000 -15.44174 -15.04891 -14.81465 -14.70418 -14.54494 -14.41922 -14.07750 -13.80775 -13.50631 -13.18444 -12.97887 -12.85902 -12.63088 -12.46021 -12.44865 -12.27417 -12.14436 -11.91271 -11.69684 -11.65017 -11.49107 -10.79529 -10.78427 -10.42056 -10.29766 -10.01329 -9.95668 -9.30950 -8.47642 -5.95919 -0.86449 0.06753 0.55059 1.24419 1.37709 1.38989 1.50016 1.60025 2.05914 2.07457 2.27797 2.83497 3.18397 3.24177 3.49213 3.52361 3.58486 3.82166 3.93706 4.13722 4.26504 4.28693 4.31909 4.32044 4.43173 4.52654 4.56529 4.70247 4.79449 4.95035 4.98650 5.01261 5.05244 5.12389 5.26332 5.39515 5.45571 5.81757 5.95515 6.10635 6.13791 6.60141 6.61079 6.91579 7.13032 7.56300 8.14161 8.69679 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012063 B = 0.002675 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.498678 B =10465.812671 C =11965.156977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.117 0.883 4 C 0.037 3.963 5 N -0.516 5.516 6 C 0.052 3.948 7 C 0.437 3.563 8 O -0.619 6.619 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.073 0.927 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.989 3.011 15 H -0.273 1.273 16 H -0.266 1.266 17 H -0.275 1.275 18 C 0.035 3.965 19 C 0.154 3.846 20 H 0.081 0.919 21 N -0.692 5.692 22 C 0.589 3.411 23 O -0.552 6.552 24 C -0.058 4.058 25 N -0.445 5.445 26 C 0.003 3.997 27 C -0.239 4.239 28 S 0.269 5.731 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.416 0.584 41 H 0.200 0.800 42 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 26.929 8.338 30.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.135 0.865 4 C -0.090 4.090 5 N -0.241 5.241 6 C -0.080 4.080 7 C 0.224 3.776 8 O -0.505 6.505 9 N -0.212 5.212 10 C -0.464 4.464 11 H 0.091 0.909 12 C -0.210 4.210 13 N -0.560 5.560 14 Si 0.813 3.187 15 H -0.198 1.198 16 H -0.190 1.190 17 H -0.200 1.200 18 C -0.094 4.094 19 C 0.048 3.952 20 H 0.099 0.901 21 N -0.346 5.346 22 C 0.372 3.628 23 O -0.429 6.429 24 C -0.331 4.331 25 N -0.162 5.162 26 C -0.153 4.153 27 C -0.380 4.380 28 S 0.522 5.478 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.254 0.746 41 H 0.217 0.783 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.064 25.294 8.291 28.826 hybrid contribution 1.650 -0.341 0.973 1.946 sum -9.414 24.953 9.264 28.233 Atomic orbital electron populations 1.21827 0.92312 1.02160 1.03319 1.22263 0.98039 0.99885 0.90899 0.86469 1.23169 0.98497 0.90268 0.97045 1.64305 1.20686 1.37672 1.01397 1.21952 0.93024 0.94216 0.98778 1.20935 0.82310 0.89139 0.85203 1.90522 1.65898 1.62637 1.31441 1.41899 1.26629 1.22778 1.29917 1.19573 1.11107 1.01309 1.14369 0.90895 1.25976 0.96915 1.02394 0.95749 1.69655 1.25208 1.40932 1.20211 0.85048 0.77839 0.77636 0.78165 1.19834 1.19023 1.20029 1.23425 0.96708 0.98231 0.91027 1.21909 0.95152 0.91009 0.87114 0.90117 1.45527 1.69053 1.14441 1.05567 1.17199 0.77271 0.86002 0.82328 1.90882 1.50034 1.19420 1.82533 1.27132 1.12828 0.98269 0.94869 1.66585 1.11534 1.35463 1.02663 1.22263 1.02933 0.87116 1.02969 1.27413 1.06696 1.05247 0.98666 1.83348 1.55385 1.03500 1.05604 0.93526 0.91780 0.89692 0.90836 0.88721 0.86467 0.90746 0.76897 0.91237 0.93682 0.93261 0.74561 0.78287 0.75520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.89 71.98 0.64 -1.30 16 2 C -0.09 -1.50 3.32 -9.91 -0.03 -1.54 16 3 H 0.12 1.10 7.72 -2.38 -0.02 1.08 16 4 C 0.04 0.76 6.34 86.45 0.55 1.31 16 5 N -0.52 -17.02 4.96 -887.56 -4.40 -21.42 16 6 C 0.05 1.81 5.18 85.56 0.44 2.25 16 7 C 0.44 21.88 7.59 87.66 0.66 22.55 16 8 O -0.62 -36.95 14.42 -3.09 -0.04 -37.00 16 9 N -0.57 -30.57 5.29 -306.98 -1.62 -32.19 16 10 C -0.33 -19.79 9.68 84.04 0.81 -18.98 16 11 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 13 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 14 Si 0.99 44.64 29.55 68.60 2.03 46.66 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 C 0.04 1.23 5.54 86.65 0.48 1.71 16 19 C 0.15 4.01 2.89 46.20 0.13 4.14 16 20 H 0.08 2.61 7.42 -2.39 -0.02 2.60 16 21 N -0.69 -15.14 5.20 -440.25 -2.29 -17.43 16 22 C 0.59 17.66 7.81 86.61 0.68 18.34 16 23 O -0.55 -23.20 16.80 -4.09 -0.07 -23.27 16 24 C -0.06 -1.40 7.46 87.26 0.65 -0.75 16 25 N -0.44 -11.96 10.59 -190.31 -2.02 -13.97 16 26 C 0.00 0.06 11.24 83.95 0.94 1.00 16 27 C -0.24 -2.24 11.09 66.91 0.74 -1.50 16 28 S 0.27 2.92 22.31 -56.49 -1.26 1.66 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.16 7.77 -2.39 -0.02 1.14 16 33 H 0.09 1.78 7.68 -2.39 -0.02 1.76 16 34 H 0.12 3.49 8.11 -2.39 -0.02 3.47 16 35 H 0.07 2.24 7.90 -2.39 -0.02 2.22 16 36 H 0.40 19.74 7.90 -92.70 -0.73 19.01 16 37 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.04 2.13 6.91 -2.38 -0.02 2.12 16 39 H 0.05 1.57 7.85 -2.39 -0.02 1.55 16 40 H 0.42 5.38 7.48 -92.71 -0.69 4.68 16 41 H 0.20 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.23 0.12 8.06 -2.91 -0.02 0.10 16 Total: -1.00 -88.63 368.77 -2.57 -91.20 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.35 Total: 28.85 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 7.17 Total: 27.13 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -10.04 Total: -135.23 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -0.11 Total: -60.27 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.26 Total: 1.66 kcal Total: -88.63 -2.57 -91.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209691959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.255 kcal (2) G-P(sol) polarization free energy of solvation -88.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds