Wall clock time and date at job start Tue Mar 31 2020 20:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.78255 * 2 1 4 4 C 1.54326 * 110.71799 * 236.76625 * 2 1 3 5 5 N 1.47024 * 107.27257 * 219.44743 * 4 2 1 6 6 C 1.36937 * 125.64671 * 178.98779 * 5 4 2 7 7 H 1.07998 * 120.00252 * 359.97438 * 6 5 4 8 8 C 1.38821 * 119.99435 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00066 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99705 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46999 * 60.00132 * 10 8 6 12 12 H 1.48494 * 109.47035 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47079 * 300.00349 * 10 8 6 14 14 C 1.47419 * 108.70234 * 358.93380 * 5 4 2 15 15 C 1.54911 * 104.83138 * 24.13272 * 14 5 4 16 16 H 1.09000 * 111.04005 * 81.07674 * 15 14 5 17 17 N 1.46508 * 111.00727 * 204.91183 * 15 14 5 18 18 C 1.34773 * 119.99998 * 267.19733 * 17 15 14 19 19 O 1.21278 * 120.00312 * 0.02562 * 18 17 15 20 20 C 1.50696 * 119.99730 * 179.97438 * 18 17 15 21 21 O 1.42899 * 109.47410 * 180.02562 * 20 18 17 22 22 C 1.35919 * 117.00284 * 180.02562 * 21 20 18 23 23 C 1.38725 * 120.04238 * 179.97438 * 22 21 20 24 24 C 1.38137 * 119.95738 * 179.97438 * 23 22 21 25 25 C 1.38364 * 120.04470 * 0.02562 * 24 23 22 26 26 Cl 1.73602 * 119.95872 * 180.02562 * 25 24 23 27 27 C 1.38368 * 120.08275 * 359.97438 * 25 24 23 28 28 C 1.38141 * 120.04539 * 0.02562 * 27 25 24 29 29 H 1.09000 * 109.46652 * 296.76097 * 1 2 3 30 30 H 1.09001 * 109.47218 * 56.75124 * 1 2 3 31 31 H 1.08990 * 109.47508 * 176.75858 * 1 2 3 32 32 H 1.08998 * 109.88110 * 338.85857 * 4 2 1 33 33 H 1.08996 * 109.88824 * 100.02568 * 4 2 1 34 34 H 0.97007 * 120.00113 * 179.97438 * 9 8 6 35 35 H 1.09001 * 110.37505 * 265.29498 * 14 5 4 36 36 H 1.09002 * 110.37004 * 142.96804 * 14 5 4 37 37 H 0.96994 * 119.99339 * 87.19398 * 17 15 14 38 38 H 1.09002 * 109.47293 * 60.00015 * 20 18 17 39 39 H 1.08996 * 109.47452 * 300.00119 * 20 18 17 40 40 H 1.08006 * 120.01988 * 359.70576 * 23 22 21 41 41 H 1.08001 * 119.98053 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.97464 * 180.02562 * 27 25 24 43 43 H 1.07995 * 120.02580 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0759 -0.7911 -1.2074 5 7 3.2444 -1.5508 -0.7392 6 6 4.0042 -2.3968 -1.5022 7 1 3.7611 -2.5504 -2.5432 8 6 5.0870 -3.0569 -0.9375 9 7 5.3835 -2.8693 0.3310 10 14 6.1231 -4.2116 -1.9781 11 1 6.7142 -3.4587 -3.1134 12 1 7.2106 -4.7862 -1.1461 13 1 5.2684 -5.3071 -2.5021 14 6 3.4633 -1.2499 0.6872 15 6 2.0790 -0.7956 1.2136 16 1 1.4448 -1.6532 1.4377 17 7 2.2215 0.0694 2.3875 18 6 2.1874 -0.4631 3.6251 19 8 2.0392 -1.6584 3.7671 20 6 2.3346 0.4266 4.8324 21 8 2.2663 -0.3661 6.0195 22 6 2.3822 0.2876 7.2055 23 6 2.3244 -0.4203 8.3972 24 6 2.4429 0.2457 9.6016 25 6 2.6187 1.6180 9.6199 26 17 2.7681 2.4527 11.1348 27 6 2.6767 2.3258 8.4324 28 6 2.5586 1.6634 7.2259 29 1 -0.3632 0.4627 0.9176 30 1 -0.3634 0.5634 -0.8594 31 1 -0.3634 -1.0259 -0.0581 32 1 1.3129 -1.4757 -1.5776 33 1 2.3740 -0.1024 -1.9978 34 1 6.1400 -3.3309 0.7257 35 1 4.1932 -0.4480 0.7983 36 1 3.7960 -2.1428 1.2166 37 1 2.3405 1.0253 2.2738 38 1 1.5316 1.1637 4.8407 39 1 3.2965 0.9377 4.7921 40 1 2.1824 -1.4909 8.3834 41 1 2.3975 -0.3049 10.5295 42 1 2.8144 3.3969 8.4488 43 1 2.6034 2.2162 6.2993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210730499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:38 Heat of formation + Delta-G solvation = -24.863406 kcal Electronic energy + Delta-G solvation = -26110.669956 eV Core-core repulsion = 22182.983993 eV Total energy + Delta-G solvation = -3927.685963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.62871 -39.47384 -38.04188 -37.30798 -36.40241 -34.00250 -32.73868 -31.59730 -30.41662 -30.36062 -28.91739 -27.13429 -25.63929 -23.76725 -23.20917 -22.48304 -20.76049 -20.19039 -19.59207 -18.71751 -17.21754 -16.92569 -16.82585 -16.47552 -16.04804 -15.66977 -14.97206 -14.80196 -14.32759 -14.21219 -13.89821 -13.75206 -13.49084 -13.16602 -13.00045 -12.88501 -12.55629 -12.52420 -12.33416 -12.01772 -11.75220 -11.63886 -11.27663 -11.11704 -11.07860 -10.97725 -10.78999 -10.68714 -10.42579 -10.02461 -9.82063 -9.80332 -9.57333 -9.48493 -8.66534 -8.56246 -8.44245 -6.86188 -5.64828 -3.08562 0.85832 0.89749 1.85559 2.48762 2.76821 3.27465 3.41091 3.45051 3.47142 3.65672 4.33552 4.43203 4.48632 4.62341 4.78054 4.82298 4.88372 5.00360 5.08281 5.14849 5.26565 5.38949 5.51552 5.54643 5.61800 5.70619 5.86861 5.90609 5.91337 5.98535 6.10259 6.17455 6.20453 6.33566 6.41971 6.62645 6.69672 6.88387 7.00955 7.39768 7.59655 7.72517 7.87586 8.34730 8.43496 9.19941 9.81300 10.43992 11.38195 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.002096 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.349664 B =13357.010942 C =14455.143442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.228 4.228 7 H 0.079 0.921 8 C -0.010 4.010 9 N -0.919 5.919 10 Si 0.916 3.084 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.148 3.852 15 C 0.120 3.880 16 H 0.095 0.905 17 N -0.709 5.709 18 C 0.513 3.487 19 O -0.510 6.510 20 C 0.040 3.960 21 O -0.282 6.282 22 C 0.141 3.859 23 C -0.137 4.137 24 C -0.069 4.069 25 C -0.078 4.078 26 Cl -0.076 7.076 27 C -0.068 4.068 28 C -0.201 4.201 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.254 0.746 35 H 0.014 0.986 36 H 0.112 0.888 37 H 0.395 0.605 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 13.978 16.133 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.356 4.356 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.567 5.567 10 Si 0.746 3.254 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.022 3.978 15 C 0.015 3.985 16 H 0.113 0.887 17 N -0.361 5.361 18 C 0.296 3.704 19 O -0.384 6.384 20 C -0.039 4.039 21 O -0.193 6.193 22 C 0.095 3.905 23 C -0.156 4.156 24 C -0.088 4.088 25 C -0.104 4.104 26 Cl -0.047 7.047 27 C -0.087 4.087 28 C -0.220 4.220 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.130 0.870 37 H 0.229 0.771 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.510 12.796 16.338 22.429 hybrid contribution 0.764 0.400 -0.563 1.030 sum -7.746 13.196 15.775 21.977 Atomic orbital electron populations 1.21742 0.94905 1.01979 1.00879 1.22438 0.95260 0.99160 0.96217 0.90768 1.21348 0.90306 0.93195 0.93692 1.44371 1.30877 1.50517 1.07131 1.19017 1.06310 1.17370 0.92900 0.90347 1.24828 0.98780 1.00526 0.96413 1.69778 1.30010 1.45985 1.10883 0.86139 0.79741 0.80618 0.78893 1.21215 1.21551 1.21066 1.22237 0.89204 1.01181 0.85170 1.22769 1.01296 0.92345 0.82041 0.88737 1.45697 1.74104 1.11111 1.05186 1.19799 0.77988 0.88790 0.83822 1.90789 1.46906 1.15014 1.85704 1.22588 1.03686 0.93940 0.83677 1.86222 1.86791 1.35047 1.11275 1.19179 0.94430 0.90790 0.86131 1.20450 1.05075 1.01184 0.88874 1.20867 0.97534 0.92083 0.98284 1.20779 1.09670 0.92932 0.87039 1.98362 1.96611 1.78395 1.31341 1.20822 0.97438 1.00312 0.90111 1.21254 1.08287 0.93338 0.99126 0.93139 0.92824 0.92408 0.95409 0.95822 0.93559 0.96849 0.87043 0.77118 0.89046 0.88748 0.83843 0.84213 0.84651 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.16 37.16 0.34 -1.44 16 2 C -0.11 -1.77 3.19 -88.79 -0.28 -2.05 16 3 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 4 C 0.14 2.83 6.84 -3.06 -0.02 2.81 16 5 N -0.60 -15.31 3.39 -170.07 -0.58 -15.89 16 6 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -27.29 10.09 55.49 0.56 -26.73 16 10 Si 0.92 22.27 29.55 -169.99 -5.02 17.24 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.15 3.58 5.58 -2.53 -0.01 3.57 16 15 C 0.12 2.23 2.87 -65.78 -0.19 2.04 16 16 H 0.09 1.98 7.44 -51.93 -0.39 1.59 16 17 N -0.71 -10.27 5.20 -51.73 -0.27 -10.54 16 18 C 0.51 8.08 7.91 -10.99 -0.09 7.99 16 19 O -0.51 -10.84 16.14 -14.35 -0.23 -11.07 16 20 C 0.04 0.44 5.22 36.00 0.19 0.63 16 21 O -0.28 -3.80 9.67 -39.39 -0.38 -4.18 16 22 C 0.14 1.56 6.69 -39.22 -0.26 1.30 16 23 C -0.14 -1.38 9.99 -39.44 -0.39 -1.78 16 24 C -0.07 -0.60 9.82 -39.57 -0.39 -0.99 16 25 C -0.08 -0.69 6.32 -39.49 -0.25 -0.94 16 26 Cl -0.08 -0.63 28.95 -51.86 -1.50 -2.13 16 27 C -0.07 -0.56 9.82 -39.57 -0.39 -0.95 16 28 C -0.20 -1.76 9.04 -39.44 -0.36 -2.12 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 32 H 0.03 0.56 7.76 -51.93 -0.40 0.15 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.11 3.21 5.88 -51.93 -0.31 2.90 16 37 H 0.40 4.17 8.57 -40.82 -0.35 3.82 16 38 H 0.09 0.68 7.66 -51.93 -0.40 0.28 16 39 H 0.09 0.82 7.66 -51.93 -0.40 0.42 16 40 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 0.89 6.30 -52.49 -0.33 0.56 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -34.31 372.74 -10.07 -44.38 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.91 Total: 2.13 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.36 Total: 1.18 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.29 Total: -53.17 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.61 Total: -15.25 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.31 -10.07 -44.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210730499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.516 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds