Wall clock time and date at job start Tue Mar 31 2020 20:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.78255 * 2 1 4 4 C 1.54326 * 110.71799 * 236.76625 * 2 1 3 5 5 N 1.47024 * 107.27257 * 219.44743 * 4 2 1 6 6 C 1.36937 * 125.64671 * 178.98779 * 5 4 2 7 7 H 1.07998 * 120.00252 * 359.97438 * 6 5 4 8 8 C 1.38821 * 119.99435 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00066 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99705 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46999 * 60.00132 * 10 8 6 12 12 H 1.48494 * 109.47035 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47079 * 300.00349 * 10 8 6 14 14 C 1.47419 * 108.70234 * 358.93380 * 5 4 2 15 15 C 1.54911 * 104.83138 * 24.13272 * 14 5 4 16 16 H 1.09000 * 111.04005 * 81.07674 * 15 14 5 17 17 N 1.46508 * 111.00727 * 204.91183 * 15 14 5 18 18 C 1.34773 * 119.99998 * 267.19733 * 17 15 14 19 19 O 1.21278 * 120.00312 * 0.02562 * 18 17 15 20 20 C 1.50696 * 119.99730 * 179.97438 * 18 17 15 21 21 O 1.42899 * 109.47410 * 180.02562 * 20 18 17 22 22 C 1.35919 * 117.00284 * 180.02562 * 21 20 18 23 23 C 1.38725 * 120.04238 * 179.97438 * 22 21 20 24 24 C 1.38137 * 119.95738 * 179.97438 * 23 22 21 25 25 C 1.38364 * 120.04470 * 0.02562 * 24 23 22 26 26 Cl 1.73602 * 119.95872 * 180.02562 * 25 24 23 27 27 C 1.38368 * 120.08275 * 359.97438 * 25 24 23 28 28 C 1.38141 * 120.04539 * 0.02562 * 27 25 24 29 29 H 1.09000 * 109.46652 * 296.76097 * 1 2 3 30 30 H 1.09001 * 109.47218 * 56.75124 * 1 2 3 31 31 H 1.08990 * 109.47508 * 176.75858 * 1 2 3 32 32 H 1.08998 * 109.88110 * 338.85857 * 4 2 1 33 33 H 1.08996 * 109.88824 * 100.02568 * 4 2 1 34 34 H 0.97007 * 120.00113 * 179.97438 * 9 8 6 35 35 H 1.09001 * 110.37505 * 265.29498 * 14 5 4 36 36 H 1.09002 * 110.37004 * 142.96804 * 14 5 4 37 37 H 0.96994 * 119.99339 * 87.19398 * 17 15 14 38 38 H 1.09002 * 109.47293 * 60.00015 * 20 18 17 39 39 H 1.08996 * 109.47452 * 300.00119 * 20 18 17 40 40 H 1.08006 * 120.01988 * 359.70576 * 23 22 21 41 41 H 1.08001 * 119.98053 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.97464 * 180.02562 * 27 25 24 43 43 H 1.07995 * 120.02580 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0759 -0.7911 -1.2074 5 7 3.2444 -1.5508 -0.7392 6 6 4.0042 -2.3968 -1.5022 7 1 3.7611 -2.5504 -2.5432 8 6 5.0870 -3.0569 -0.9375 9 7 5.3835 -2.8693 0.3310 10 14 6.1231 -4.2116 -1.9781 11 1 6.7142 -3.4587 -3.1134 12 1 7.2106 -4.7862 -1.1461 13 1 5.2684 -5.3071 -2.5021 14 6 3.4633 -1.2499 0.6872 15 6 2.0790 -0.7956 1.2136 16 1 1.4448 -1.6532 1.4377 17 7 2.2215 0.0694 2.3875 18 6 2.1874 -0.4631 3.6251 19 8 2.0392 -1.6584 3.7671 20 6 2.3346 0.4266 4.8324 21 8 2.2663 -0.3661 6.0195 22 6 2.3822 0.2876 7.2055 23 6 2.3244 -0.4203 8.3972 24 6 2.4429 0.2457 9.6016 25 6 2.6187 1.6180 9.6199 26 17 2.7681 2.4527 11.1348 27 6 2.6767 2.3258 8.4324 28 6 2.5586 1.6634 7.2259 29 1 -0.3632 0.4627 0.9176 30 1 -0.3634 0.5634 -0.8594 31 1 -0.3634 -1.0259 -0.0581 32 1 1.3129 -1.4757 -1.5776 33 1 2.3740 -0.1024 -1.9978 34 1 6.1400 -3.3309 0.7257 35 1 4.1932 -0.4480 0.7983 36 1 3.7960 -2.1428 1.2166 37 1 2.3405 1.0253 2.2738 38 1 1.5316 1.1637 4.8407 39 1 3.2965 0.9377 4.7921 40 1 2.1824 -1.4909 8.3834 41 1 2.3975 -0.3049 10.5295 42 1 2.8144 3.3969 8.4488 43 1 2.6034 2.2162 6.2993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210730499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:37 Heat of formation + Delta-G solvation = -46.855638 kcal Electronic energy + Delta-G solvation = -26111.623611 eV Core-core repulsion = 22182.983993 eV Total energy + Delta-G solvation = -3928.639617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53128 -40.68399 -39.25028 -38.44316 -37.10701 -35.67051 -34.36416 -32.29396 -32.16062 -31.21152 -30.09041 -28.54684 -27.30065 -25.30831 -24.01281 -23.30959 -22.29634 -21.66348 -20.99514 -19.49681 -18.93252 -18.27326 -17.69100 -17.40530 -17.19069 -16.88241 -16.70601 -15.66915 -15.53215 -15.47386 -15.38076 -14.54646 -14.47496 -14.40825 -14.33313 -14.15996 -13.92376 -13.85416 -13.37774 -13.20548 -13.04756 -12.82794 -12.81671 -12.58278 -12.33401 -12.25898 -12.04630 -11.84339 -11.73989 -11.70035 -11.64724 -11.42203 -10.92685 -10.76663 -10.14200 -10.03363 -9.17739 -8.90798 -7.78481 -5.24676 0.16985 0.21931 1.18586 1.43641 1.47719 1.49468 1.54373 1.57936 2.46955 2.58620 2.64056 3.31077 3.49435 3.67404 3.73818 3.83312 3.86805 4.01057 4.04613 4.07222 4.15713 4.16240 4.34425 4.49211 4.53564 4.62576 4.66779 4.90142 4.92292 4.93639 5.04447 5.09664 5.18793 5.20649 5.23578 5.27671 5.44950 5.50313 5.52623 5.63423 5.79705 6.23218 6.28010 6.57511 7.06368 7.25812 7.76198 8.38071 9.21771 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.002096 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.349664 B =13357.010942 C =14455.143442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.104 0.896 4 C 0.131 3.869 5 N -0.627 5.627 6 C -0.240 4.240 7 H 0.086 0.914 8 C -0.071 4.071 9 N -0.949 5.949 10 Si 0.982 3.018 11 H -0.273 1.273 12 H -0.297 1.297 13 H -0.277 1.277 14 C 0.155 3.845 15 C 0.137 3.863 16 H 0.066 0.934 17 N -0.692 5.692 18 C 0.507 3.493 19 O -0.576 6.576 20 C 0.047 3.953 21 O -0.318 6.318 22 C 0.120 3.880 23 C -0.154 4.154 24 C -0.070 4.070 25 C -0.085 4.085 26 Cl -0.072 7.072 27 C -0.068 4.068 28 C -0.195 4.195 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.035 0.965 34 H 0.244 0.756 35 H -0.003 1.003 36 H 0.058 0.942 37 H 0.420 0.580 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.138 0.862 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.633 17.096 15.985 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 H 0.122 0.878 4 C 0.006 3.994 5 N -0.353 5.353 6 C -0.369 4.369 7 H 0.104 0.896 8 C -0.264 4.264 9 N -0.599 5.599 10 Si 0.809 3.191 11 H -0.199 1.199 12 H -0.223 1.223 13 H -0.203 1.203 14 C 0.028 3.972 15 C 0.030 3.970 16 H 0.084 0.916 17 N -0.346 5.346 18 C 0.293 3.707 19 O -0.454 6.454 20 C -0.031 4.031 21 O -0.231 6.231 22 C 0.074 3.926 23 C -0.173 4.173 24 C -0.089 4.089 25 C -0.112 4.112 26 Cl -0.043 7.043 27 C -0.086 4.086 28 C -0.213 4.213 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.258 0.742 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.172 0.828 42 H 0.177 0.823 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.595 15.994 16.174 24.688 hybrid contribution 1.077 -0.550 -0.486 1.303 sum -8.518 15.444 15.689 23.605 Atomic orbital electron populations 1.21700 0.92046 1.01837 1.03182 1.22382 0.97369 0.99219 0.92093 0.87811 1.21630 0.88554 0.93332 0.95858 1.44681 1.32059 1.50927 1.07679 1.19456 1.06446 1.17409 0.93562 0.89642 1.25719 1.00473 1.02588 0.97600 1.70103 1.30168 1.47089 1.12524 0.85104 0.77842 0.78700 0.77419 1.19869 1.22303 1.20299 1.21902 0.92104 0.98363 0.84839 1.22176 0.97247 0.93051 0.84481 0.91598 1.45441 1.73321 1.11869 1.03922 1.20776 0.76061 0.88590 0.85276 1.90766 1.49795 1.18188 1.86698 1.22675 1.06889 0.92732 0.80775 1.86163 1.87599 1.36853 1.12475 1.19388 0.95971 0.91936 0.85310 1.20581 1.05900 1.01294 0.89520 1.21018 0.97086 0.92410 0.98366 1.20974 1.09464 0.93079 0.87634 1.98365 1.96572 1.78204 1.31141 1.21129 0.96460 1.01470 0.89589 1.21522 1.06994 0.92298 1.00516 0.90968 0.90306 0.93896 0.95364 0.94734 0.94612 0.98541 0.92398 0.74219 0.84489 0.85922 0.84400 0.82774 0.82339 0.81549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.16 71.98 0.66 -2.28 16 2 C -0.09 -2.69 3.19 -9.61 -0.03 -2.72 16 3 H 0.10 2.50 8.00 -2.38 -0.02 2.48 16 4 C 0.13 5.14 6.84 86.73 0.59 5.73 16 5 N -0.63 -32.53 3.39 -691.99 -2.35 -34.88 16 6 C -0.24 -13.66 10.27 84.04 0.86 -12.79 16 7 H 0.09 4.60 7.83 -2.91 -0.02 4.57 16 8 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 9 N -0.95 -59.22 10.09 21.65 0.22 -59.00 16 10 Si 0.98 46.88 29.55 68.60 2.03 48.90 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 14 C 0.15 7.77 5.58 86.86 0.48 8.26 16 15 C 0.14 5.09 2.87 46.38 0.13 5.23 16 16 H 0.07 2.86 7.44 -2.39 -0.02 2.85 16 17 N -0.69 -19.15 5.20 -435.96 -2.27 -21.41 16 18 C 0.51 15.81 7.91 87.66 0.69 16.50 16 19 O -0.58 -25.67 16.14 16.01 0.26 -25.41 16 20 C 0.05 0.92 5.22 71.23 0.37 1.29 16 21 O -0.32 -8.44 9.67 -73.60 -0.71 -9.15 16 22 C 0.12 2.52 6.69 22.50 0.15 2.67 16 23 C -0.15 -3.12 9.99 22.36 0.22 -2.90 16 24 C -0.07 -1.17 9.82 22.28 0.22 -0.95 16 25 C -0.08 -1.36 6.32 22.33 0.14 -1.22 16 26 Cl -0.07 -1.07 28.95 -2.72 -0.08 -1.15 16 27 C -0.07 -0.94 9.82 22.28 0.22 -0.72 16 28 C -0.19 -2.85 9.04 22.36 0.20 -2.65 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.11 8.06 -2.39 -0.02 1.09 16 32 H 0.03 1.10 7.76 -2.39 -0.02 1.09 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.24 14.96 8.31 -92.70 -0.77 14.19 16 35 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.06 3.57 5.88 -2.39 -0.01 3.55 16 37 H 0.42 7.45 8.57 -92.71 -0.79 6.66 16 38 H 0.14 1.43 7.66 -2.39 -0.02 1.42 16 39 H 0.12 1.72 7.66 -2.39 -0.02 1.71 16 40 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 43 H 0.17 1.37 6.30 -2.91 -0.02 1.35 16 Total: -1.00 -81.60 372.74 2.73 -78.87 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.24 Total: 13.49 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.39 Total: 9.74 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -4.40 Total: -115.29 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.45 Total: -34.57 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -81.60 2.73 -78.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210730499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.012 kcal (2) G-P(sol) polarization free energy of solvation -81.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds