Wall clock time and date at job start Tue Mar 31 2020 20:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.91272 * 2 1 4 4 C 1.54904 * 111.00431 * 236.09441 * 2 1 3 5 5 N 1.47426 * 104.83061 * 204.91583 * 4 2 1 6 6 C 1.34778 * 125.64668 * 204.08854 * 5 4 2 7 7 O 1.21682 * 120.00352 * 355.17169 * 6 5 4 8 8 C 1.46685 * 119.99764 * 175.15943 * 6 5 4 9 9 C 1.35669 * 126.12811 * 185.45113 * 8 6 5 10 10 N 1.30946 * 114.18793 * 180.02562 * 9 8 6 11 11 C 1.29434 * 117.36559 * 359.97438 * 10 9 8 12 12 S 1.70954 * 110.38898 * 359.72846 * 11 10 9 13 13 C 1.47019 * 108.70375 * 24.12939 * 5 4 2 14 14 C 1.54326 * 107.27156 * 358.93893 * 13 5 4 15 15 H 1.09004 * 110.71894 * 96.35009 * 14 13 5 16 16 N 1.46897 * 110.71890 * 219.44243 * 14 13 5 17 17 C 1.46891 * 111.00368 * 273.54668 * 16 14 13 18 18 C 1.50702 * 109.47718 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99529 * 359.97438 * 18 17 16 20 20 N 1.34769 * 120.00429 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00100 * 180.27618 * 20 18 17 22 22 H 1.08004 * 119.99574 * 359.72228 * 21 20 18 23 23 C 1.38943 * 120.00197 * 179.72569 * 21 20 18 24 24 N 1.31412 * 120.00230 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 120.00129 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47204 * 89.99858 * 25 23 21 27 27 H 1.48495 * 109.46978 * 210.00416 * 25 23 21 28 28 H 1.48506 * 109.46693 * 329.99943 * 25 23 21 29 29 H 1.08999 * 109.47059 * 296.10408 * 1 2 3 30 30 H 1.09005 * 109.47268 * 56.09945 * 1 2 3 31 31 H 1.08997 * 109.47270 * 176.09978 * 1 2 3 32 32 H 1.09000 * 110.36854 * 86.08031 * 4 2 1 33 33 H 1.09003 * 110.46054 * 323.80213 * 4 2 1 34 34 H 1.07999 * 122.90446 * 0.02562 * 9 8 6 35 35 H 1.07993 * 124.80476 * 180.02562 * 11 10 9 36 36 H 1.09004 * 109.88325 * 239.52054 * 13 5 4 37 37 H 1.09004 * 109.88499 * 118.35658 * 13 5 4 38 38 H 1.00901 * 110.99959 * 149.59282 * 16 14 13 39 39 H 1.09005 * 109.47538 * 60.00175 * 17 16 14 40 40 H 1.09002 * 109.47184 * 300.00435 * 17 16 14 41 41 H 0.97004 * 120.00036 * 0.02562 * 20 18 17 42 42 H 0.97000 * 120.00076 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4476 -1.5617 -1.5939 7 8 4.2753 -1.5855 -2.7982 8 6 5.7662 -1.8795 -1.0353 9 6 6.8995 -2.1137 -1.7433 10 7 7.9486 -2.3767 -1.0050 11 6 7.7863 -2.3819 0.2791 12 16 6.1638 -2.0178 0.6758 13 6 3.4674 -1.2740 0.6961 14 6 2.0861 -0.8078 1.2023 15 1 1.4478 -1.6631 1.4241 16 7 2.2290 0.0521 2.3847 17 6 2.2896 -0.7494 3.6143 18 6 2.4352 0.1650 4.8034 19 8 2.4843 1.3662 4.6423 20 7 2.5110 -0.3520 6.0457 21 6 2.6378 0.4802 7.1279 22 1 2.6815 1.5498 6.9844 23 6 2.7102 -0.0524 8.4091 24 7 2.8323 0.7451 9.4464 25 14 2.6340 -1.9024 8.6573 26 1 4.0078 -2.4646 8.6144 27 1 2.0183 -2.2000 9.9754 28 1 1.8153 -2.5131 7.5793 29 1 -0.3633 0.4522 0.9228 30 1 -0.3634 0.5732 -0.8530 31 1 -0.3633 -1.0252 -0.0699 32 1 2.1560 -0.1721 -2.0836 33 1 1.4524 -1.6705 -1.4042 34 1 6.9335 -2.0856 -2.8223 35 1 8.5666 -2.5827 0.9982 36 1 4.2426 -0.5996 1.0601 37 1 3.6650 -2.2893 1.0403 38 1 1.4829 0.7298 2.4313 39 1 3.1449 -1.4234 3.5670 40 1 1.3734 -1.3315 3.7141 41 1 2.4722 -1.3126 6.1745 42 1 2.8824 0.3733 10.3408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214231218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:13 Heat of formation + Delta-G solvation = -6.653941 kcal Electronic energy + Delta-G solvation = -26530.636419 eV Core-core repulsion = 22638.076536 eV Total energy + Delta-G solvation = -3892.559884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66721 -39.81830 -38.64667 -37.92028 -34.91211 -33.95499 -33.07461 -31.72984 -30.90171 -29.21167 -27.39378 -26.64264 -25.80805 -24.13658 -22.52003 -21.47425 -20.77064 -19.81778 -19.42786 -18.71854 -18.36486 -17.17942 -16.67577 -16.38572 -15.86991 -15.47195 -15.32174 -14.94181 -14.64126 -14.52675 -14.34860 -14.28213 -13.93248 -13.69786 -13.34564 -13.18443 -13.05309 -12.79572 -12.54464 -12.47341 -12.12465 -11.85097 -11.84147 -11.50784 -11.33411 -11.21388 -10.86697 -10.66102 -10.51984 -10.04099 -9.91855 -9.83293 -9.64512 -9.46569 -8.94035 -8.72835 -8.38535 -8.25125 -6.37518 -3.89500 -0.05420 0.90906 1.30820 2.15589 2.51390 2.88158 2.95976 3.00844 3.09948 3.64335 3.79257 3.94688 4.02889 4.04155 4.17659 4.44485 4.61001 4.79925 4.84182 4.84972 4.98634 5.01595 5.09811 5.15379 5.29189 5.30966 5.39668 5.44824 5.55762 5.57839 5.65694 5.72588 5.78339 5.82086 5.85247 5.99822 6.88599 7.03327 7.28397 7.35354 7.50589 7.71417 8.07142 8.52026 8.87988 9.35024 9.74057 10.75449 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003059 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.801925 B = 9150.554228 C =10937.879029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.100 0.900 4 C 0.116 3.884 5 N -0.612 5.612 6 C 0.614 3.386 7 O -0.530 6.530 8 C -0.296 4.296 9 C 0.116 3.884 10 N -0.480 5.480 11 C 0.013 3.987 12 S 0.203 5.797 13 C 0.091 3.909 14 C 0.084 3.916 15 H 0.066 0.934 16 N -0.656 5.656 17 C 0.045 3.955 18 C 0.448 3.552 19 O -0.564 6.564 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.187 0.813 35 H 0.204 0.796 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.359 0.641 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.370 0.630 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.785 -9.822 -18.830 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.119 0.881 4 C -0.006 4.006 5 N -0.345 5.345 6 C 0.401 3.599 7 O -0.408 6.408 8 C -0.420 4.420 9 C -0.043 4.043 10 N -0.194 5.194 11 C -0.281 4.281 12 S 0.459 5.541 13 C -0.034 4.034 14 C -0.027 4.027 15 H 0.084 0.916 16 N -0.291 5.291 17 C -0.088 4.088 18 C 0.234 3.766 19 O -0.446 6.446 20 N -0.228 5.228 21 C -0.435 4.435 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.519 5.519 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.204 0.796 35 H 0.221 0.779 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.181 0.819 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.203 0.797 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.528 -8.969 -18.627 20.730 hybrid contribution -0.698 -1.816 -0.140 1.951 sum 0.830 -10.786 -18.767 21.661 Atomic orbital electron populations 1.21738 0.93173 1.02367 1.02876 1.22577 0.96496 1.00481 0.93080 0.88140 1.22324 0.81911 0.98466 0.97897 1.48187 1.12482 1.66748 1.07075 1.16275 0.81384 0.76910 0.85287 1.90843 1.82957 1.53443 1.13556 1.25743 1.00122 1.19084 0.97061 1.22229 0.85067 0.95078 1.01928 1.66344 1.31727 1.16940 1.04340 1.29085 1.01986 1.01018 0.95962 1.84620 1.05019 1.60262 1.04209 1.22350 1.00092 1.01794 0.79160 1.22514 0.93627 0.95546 0.91025 0.91612 1.60002 1.53568 1.15850 0.99653 1.21810 1.01312 0.95655 0.90016 1.19630 0.84378 0.89146 0.83445 1.90581 1.53958 1.15106 1.84913 1.42200 1.66366 1.08043 1.06188 1.19427 1.47619 0.93388 0.83063 0.86246 1.25045 0.97556 0.98294 0.95201 1.69619 1.48683 1.34867 0.98770 0.86680 0.78890 0.85171 0.78678 1.19550 1.20167 1.19528 0.91600 0.91730 0.92246 0.89813 0.90850 0.79630 0.77947 0.88821 0.90939 0.81899 0.89438 0.93372 0.79694 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.31 37.16 0.35 -0.63 16 2 C -0.11 -0.90 3.07 -88.48 -0.27 -1.17 16 3 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.05 6.36 -2.53 -0.02 1.04 16 5 N -0.61 -6.57 3.33 -172.06 -0.57 -7.15 16 6 C 0.61 7.69 7.81 -12.85 -0.10 7.59 16 7 O -0.53 -8.01 17.17 5.20 0.09 -7.92 16 8 C -0.30 -3.29 6.40 -37.09 -0.24 -3.53 16 9 C 0.12 1.27 11.10 -18.85 -0.21 1.06 16 10 N -0.48 -5.24 10.51 -15.38 -0.16 -5.40 16 11 C 0.01 0.11 12.22 51.75 0.63 0.75 16 12 S 0.20 1.81 18.73 -107.50 -2.01 -0.20 16 13 C 0.09 0.90 4.88 -3.06 -0.01 0.88 16 14 C 0.08 0.81 2.71 -65.88 -0.18 0.63 16 15 H 0.07 0.56 7.80 -51.93 -0.40 0.16 16 16 N -0.66 -8.41 5.92 -106.06 -0.63 -9.04 16 17 C 0.04 0.63 6.02 -4.98 -0.03 0.60 16 18 C 0.45 9.30 7.82 -10.99 -0.09 9.22 16 19 O -0.56 -14.13 15.78 5.54 0.09 -14.04 16 20 N -0.59 -13.08 5.09 -10.96 -0.06 -13.14 16 21 C -0.31 -8.29 10.16 -14.93 -0.15 -8.44 16 22 H 0.12 3.73 7.39 -52.48 -0.39 3.34 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -24.95 13.96 55.50 0.77 -24.17 16 25 Si 0.88 18.45 27.74 -169.99 -4.71 13.74 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.27 -5.09 6.52 56.52 0.37 -4.72 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 8.07 -51.93 -0.42 -0.05 16 32 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.07 0.60 7.99 -51.93 -0.41 0.18 16 34 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 35 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.09 1.04 6.58 -51.93 -0.34 0.70 16 37 H 0.07 0.64 7.21 -51.93 -0.37 0.26 16 38 H 0.36 4.81 8.20 -39.29 -0.32 4.49 16 39 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 40 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 41 H 0.37 7.15 5.76 -40.82 -0.24 6.91 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -33.99 364.45 -7.56 -41.55 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.44 Total: 11.28 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -0.41 Total: 9.01 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.64 Total: -58.90 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.18 Total: -21.96 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -4.71 Total: 13.74 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.01 Total: -0.20 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.99 -7.56 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214231218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.892 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds