Wall clock time and date at job start Tue Mar 31 2020 20:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.91272 * 2 1 4 4 C 1.54904 * 111.00431 * 236.09441 * 2 1 3 5 5 N 1.47426 * 104.83061 * 204.91583 * 4 2 1 6 6 C 1.34778 * 125.64668 * 204.08854 * 5 4 2 7 7 O 1.21682 * 120.00352 * 355.17169 * 6 5 4 8 8 C 1.46685 * 119.99764 * 175.15943 * 6 5 4 9 9 C 1.35669 * 126.12811 * 185.45113 * 8 6 5 10 10 N 1.30946 * 114.18793 * 180.02562 * 9 8 6 11 11 C 1.29434 * 117.36559 * 359.97438 * 10 9 8 12 12 S 1.70954 * 110.38898 * 359.72846 * 11 10 9 13 13 C 1.47019 * 108.70375 * 24.12939 * 5 4 2 14 14 C 1.54326 * 107.27156 * 358.93893 * 13 5 4 15 15 H 1.09004 * 110.71894 * 96.35009 * 14 13 5 16 16 N 1.46897 * 110.71890 * 219.44243 * 14 13 5 17 17 C 1.46891 * 111.00368 * 273.54668 * 16 14 13 18 18 C 1.50702 * 109.47718 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99529 * 359.97438 * 18 17 16 20 20 N 1.34769 * 120.00429 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00100 * 180.27618 * 20 18 17 22 22 H 1.08004 * 119.99574 * 359.72228 * 21 20 18 23 23 C 1.38943 * 120.00197 * 179.72569 * 21 20 18 24 24 N 1.31412 * 120.00230 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 120.00129 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47204 * 89.99858 * 25 23 21 27 27 H 1.48495 * 109.46978 * 210.00416 * 25 23 21 28 28 H 1.48506 * 109.46693 * 329.99943 * 25 23 21 29 29 H 1.08999 * 109.47059 * 296.10408 * 1 2 3 30 30 H 1.09005 * 109.47268 * 56.09945 * 1 2 3 31 31 H 1.08997 * 109.47270 * 176.09978 * 1 2 3 32 32 H 1.09000 * 110.36854 * 86.08031 * 4 2 1 33 33 H 1.09003 * 110.46054 * 323.80213 * 4 2 1 34 34 H 1.07999 * 122.90446 * 0.02562 * 9 8 6 35 35 H 1.07993 * 124.80476 * 180.02562 * 11 10 9 36 36 H 1.09004 * 109.88325 * 239.52054 * 13 5 4 37 37 H 1.09004 * 109.88499 * 118.35658 * 13 5 4 38 38 H 1.00901 * 110.99959 * 149.59282 * 16 14 13 39 39 H 1.09005 * 109.47538 * 60.00175 * 17 16 14 40 40 H 1.09002 * 109.47184 * 300.00435 * 17 16 14 41 41 H 0.97004 * 120.00036 * 0.02562 * 20 18 17 42 42 H 0.97000 * 120.00076 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4476 -1.5617 -1.5939 7 8 4.2753 -1.5855 -2.7982 8 6 5.7662 -1.8795 -1.0353 9 6 6.8995 -2.1137 -1.7433 10 7 7.9486 -2.3767 -1.0050 11 6 7.7863 -2.3819 0.2791 12 16 6.1638 -2.0178 0.6758 13 6 3.4674 -1.2740 0.6961 14 6 2.0861 -0.8078 1.2023 15 1 1.4478 -1.6631 1.4241 16 7 2.2290 0.0521 2.3847 17 6 2.2896 -0.7494 3.6143 18 6 2.4352 0.1650 4.8034 19 8 2.4843 1.3662 4.6423 20 7 2.5110 -0.3520 6.0457 21 6 2.6378 0.4802 7.1279 22 1 2.6815 1.5498 6.9844 23 6 2.7102 -0.0524 8.4091 24 7 2.8323 0.7451 9.4464 25 14 2.6340 -1.9024 8.6573 26 1 4.0078 -2.4646 8.6144 27 1 2.0183 -2.2000 9.9754 28 1 1.8153 -2.5131 7.5793 29 1 -0.3633 0.4522 0.9228 30 1 -0.3634 0.5732 -0.8530 31 1 -0.3633 -1.0252 -0.0699 32 1 2.1560 -0.1721 -2.0836 33 1 1.4524 -1.6705 -1.4042 34 1 6.9335 -2.0856 -2.8223 35 1 8.5666 -2.5827 0.9982 36 1 4.2426 -0.5996 1.0601 37 1 3.6650 -2.2893 1.0403 38 1 1.4829 0.7298 2.4313 39 1 3.1449 -1.4234 3.5670 40 1 1.3734 -1.3315 3.7141 41 1 2.4722 -1.3126 6.1745 42 1 2.8824 0.3733 10.3408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214231218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:12 Heat of formation + Delta-G solvation = -34.325395 kcal Electronic energy + Delta-G solvation = -26531.836344 eV Core-core repulsion = 22638.076536 eV Total energy + Delta-G solvation = -3893.759808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51179 -40.63447 -40.16174 -38.95833 -36.20413 -35.57269 -33.91622 -33.66406 -31.67189 -30.17733 -28.21250 -27.87570 -26.56805 -25.67915 -23.39591 -22.28444 -21.60686 -21.12891 -20.57586 -20.15453 -19.49680 -18.07172 -17.68223 -17.39952 -17.06040 -16.84172 -16.45761 -16.13467 -15.69936 -15.49819 -15.17439 -15.00209 -14.99641 -14.94259 -14.64145 -14.33289 -14.15573 -13.84872 -13.76652 -13.48249 -13.34210 -12.97328 -12.75246 -12.59212 -12.36966 -12.22085 -12.02532 -11.93981 -11.57586 -11.47380 -11.45051 -10.67651 -10.61448 -10.38909 -10.23161 -10.20547 -9.73945 -9.40930 -8.37403 -5.98300 -0.81284 0.17695 0.57879 1.33492 1.33595 1.39563 1.48261 1.69569 2.01409 2.02647 2.26861 2.71262 3.11418 3.19640 3.31730 3.40281 3.47447 3.68265 4.02228 4.12130 4.13053 4.18967 4.26258 4.31159 4.44706 4.50355 4.55605 4.62174 4.63155 4.75155 4.84268 4.97359 4.97958 5.08341 5.21340 5.38528 5.56578 5.92720 6.05022 6.18062 6.34181 6.53922 6.63683 6.81654 6.93034 7.44910 8.01935 8.80272 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003059 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.801925 B = 9150.554228 C =10937.879029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.114 3.886 5 N -0.610 5.610 6 C 0.609 3.391 7 O -0.567 6.567 8 C -0.319 4.319 9 C 0.111 3.889 10 N -0.505 5.505 11 C 0.020 3.980 12 S 0.235 5.765 13 C 0.089 3.911 14 C 0.090 3.910 15 H 0.092 0.908 16 N -0.673 5.673 17 C 0.059 3.941 18 C 0.450 3.550 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.326 4.326 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.964 3.036 26 H -0.256 1.256 27 H -0.280 1.280 28 H -0.227 1.227 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.186 0.814 35 H 0.237 0.763 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.354 0.646 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.390 0.610 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -13.486 -19.180 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.342 5.342 6 C 0.398 3.602 7 O -0.448 6.448 8 C -0.444 4.444 9 C -0.048 4.048 10 N -0.219 5.219 11 C -0.273 4.273 12 S 0.491 5.509 13 C -0.036 4.036 14 C -0.021 4.021 15 H 0.110 0.890 16 N -0.307 5.307 17 C -0.073 4.073 18 C 0.238 3.762 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.455 4.455 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.578 5.578 25 Si 0.784 3.216 26 H -0.181 1.181 27 H -0.205 1.205 28 H -0.150 1.150 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.203 0.797 35 H 0.253 0.747 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.175 0.825 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.226 0.774 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.961 -12.643 -18.989 22.833 hybrid contribution -0.491 -0.506 -0.062 0.708 sum 0.470 -13.149 -19.051 23.153 Atomic orbital electron populations 1.21717 0.91644 1.03365 1.02979 1.22491 0.97598 0.99373 0.92294 0.89707 1.22450 0.81434 0.99031 0.97858 1.48253 1.12675 1.65832 1.07452 1.16491 0.82090 0.76615 0.85014 1.90811 1.83655 1.55325 1.15021 1.25699 0.99607 1.20332 0.98720 1.22329 0.85326 0.94890 1.02274 1.66390 1.31855 1.18291 1.05359 1.29681 1.02802 0.98991 0.95788 1.84401 1.04818 1.59560 1.02099 1.22435 1.00051 1.02569 0.78511 1.22564 0.93827 0.95894 0.89809 0.89042 1.59946 1.53978 1.16589 1.00208 1.21758 1.04322 0.94279 0.86984 1.20982 0.81134 0.89483 0.84630 1.90566 1.55229 1.18129 1.85903 1.42019 1.67301 1.08432 1.05518 1.18989 1.49511 0.91520 0.85530 0.92746 1.26124 0.96163 1.05250 0.93947 1.69813 1.50152 1.38223 0.99614 0.85383 0.80143 0.76558 0.79547 1.18091 1.20539 1.14980 0.92013 0.91089 0.90844 0.90627 0.89260 0.79695 0.74737 0.90055 0.89079 0.82456 0.86372 0.89793 0.77407 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.31 71.98 0.67 -0.87 16 2 C -0.10 -1.45 3.07 -9.40 -0.03 -1.48 16 3 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 4 C 0.11 1.87 6.36 86.85 0.55 2.42 16 5 N -0.61 -12.15 3.33 -816.49 -2.72 -14.86 16 6 C 0.61 14.95 7.81 86.45 0.68 15.63 16 7 O -0.57 -17.35 17.17 -4.29 -0.07 -17.42 16 8 C -0.32 -6.84 6.40 23.88 0.15 -6.69 16 9 C 0.11 2.41 11.10 84.23 0.93 3.34 16 10 N -0.51 -10.42 10.51 -202.56 -2.13 -12.54 16 11 C 0.02 0.30 12.22 130.60 1.60 1.90 16 12 S 0.24 3.65 18.73 -56.49 -1.06 2.59 16 13 C 0.09 1.51 4.88 86.73 0.42 1.93 16 14 C 0.09 1.41 2.71 46.10 0.12 1.53 16 15 H 0.09 1.06 7.80 -2.38 -0.02 1.05 16 16 N -0.67 -15.50 5.92 -489.46 -2.90 -18.40 16 17 C 0.06 1.42 6.02 85.56 0.52 1.93 16 18 C 0.45 18.11 7.82 87.66 0.69 18.80 16 19 O -0.61 -31.47 15.78 -3.08 -0.05 -31.52 16 20 N -0.59 -25.48 5.09 -306.99 -1.56 -27.04 16 21 C -0.33 -18.18 10.16 84.04 0.85 -17.33 16 22 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 23 C -0.02 -0.88 5.50 84.92 0.47 -0.41 16 24 N -0.94 -55.03 13.96 21.66 0.30 -54.72 16 25 Si 0.96 36.44 27.74 68.60 1.90 38.34 16 26 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 27 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 28 H -0.23 -6.94 6.52 99.48 0.65 -6.29 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 0.63 8.07 -2.39 -0.02 0.61 16 32 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 33 H 0.09 1.21 7.99 -2.39 -0.02 1.19 16 34 H 0.19 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.24 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.08 1.63 6.58 -2.38 -0.02 1.61 16 37 H 0.09 1.23 7.21 -2.39 -0.02 1.21 16 38 H 0.35 8.92 8.20 -89.69 -0.74 8.18 16 39 H 0.12 2.22 8.13 -2.38 -0.02 2.20 16 40 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 41 H 0.39 13.56 5.76 -92.71 -0.53 13.03 16 42 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -80.58 364.45 -0.91 -81.49 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.25 Total: 33.38 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 7.62 Total: 20.71 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -9.00 Total: -127.57 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -0.12 Total: -48.94 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 1.90 Total: 38.34 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.06 Total: 2.59 kcal Total: -80.58 -0.91 -81.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214231218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.163 kcal (2) G-P(sol) polarization free energy of solvation -80.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds