Wall clock time and date at job start Tue Mar 31 2020 20:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08989 * 110.65480 * 2 1 4 4 C 1.54591 * 110.98699 * 236.83863 * 2 1 3 5 5 N 1.48122 * 103.42248 * 204.37023 * 4 2 1 6 6 C 1.34776 * 127.03433 * 219.28917 * 5 4 2 7 7 O 1.21630 * 120.00042 * 5.18408 * 6 5 4 8 8 C 1.47102 * 119.99692 * 185.18641 * 6 5 4 9 9 C 1.38385 * 127.99558 * 175.16924 * 8 6 5 10 10 C 1.37580 * 111.26279 * 179.97438 * 9 8 6 11 11 N 1.29558 * 117.94766 * 0.02562 * 10 9 8 12 12 S 1.56307 * 110.37900 * 0.02562 * 11 10 9 13 13 C 1.47480 * 105.92650 * 39.02913 * 5 4 2 14 14 C 1.54005 * 107.08978 * 334.77770 * 13 5 4 15 15 H 1.08996 * 110.32660 * 120.19913 * 14 13 5 16 16 N 1.46894 * 110.32812 * 242.41635 * 14 13 5 17 17 C 1.46901 * 111.00225 * 273.54645 * 16 14 13 18 18 C 1.50693 * 109.47373 * 179.97438 * 17 16 14 19 19 O 1.21291 * 120.00274 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99964 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99667 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00253 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99494 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00138 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99699 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47193 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46719 * 120.00394 * 25 23 21 28 28 H 1.48498 * 109.47361 * 240.00006 * 25 23 21 29 29 H 1.08999 * 109.47197 * 296.81054 * 1 2 3 30 30 H 1.08991 * 109.47299 * 56.81436 * 1 2 3 31 31 H 1.09008 * 109.46806 * 176.81022 * 1 2 3 32 32 H 1.08998 * 110.61688 * 85.86043 * 4 2 1 33 33 H 1.08996 * 110.55100 * 322.85508 * 4 2 1 34 34 H 1.08002 * 124.37073 * 359.91817 * 9 8 6 35 35 H 1.07992 * 121.02424 * 179.97438 * 10 9 8 36 36 H 1.09006 * 109.91582 * 94.13815 * 13 5 4 37 37 H 1.08996 * 109.91057 * 215.41188 * 13 5 4 38 38 H 1.00909 * 110.99946 * 37.49540 * 16 14 13 39 39 H 1.09003 * 109.46941 * 299.99701 * 17 16 14 40 40 H 1.09005 * 109.47334 * 59.99431 * 17 16 14 41 41 H 0.96999 * 119.99977 * 359.97438 * 20 18 17 42 42 H 0.96995 * 119.99898 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9145 1.0198 0.0000 4 6 2.0837 -0.7895 -1.2083 5 7 3.4322 -1.2057 -0.7583 6 6 4.5594 -1.2405 -1.4964 7 8 4.5529 -0.8178 -2.6369 8 6 5.7975 -1.7899 -0.9226 9 6 7.0131 -1.9897 -1.5530 10 6 7.9411 -2.5243 -0.6893 11 7 7.5720 -2.7564 0.5308 12 16 6.0766 -2.3493 0.7339 13 6 3.2903 -1.5680 0.6642 14 6 2.0775 -0.7916 1.2101 15 1 1.3221 -1.4830 1.5835 16 7 2.4982 0.1296 2.2742 17 6 2.5206 -0.5471 3.5779 18 6 2.9565 0.4268 4.6421 19 8 3.2218 1.5722 4.3439 20 7 3.0504 0.0254 5.9253 21 6 3.4464 0.9117 6.8935 22 1 3.6835 1.9313 6.6278 23 6 3.5427 0.4980 8.2165 24 7 3.2547 -0.7428 8.5396 25 14 4.0829 1.7054 9.5355 26 1 4.3472 3.0291 8.9167 27 1 3.0093 1.8403 10.5526 28 1 5.3211 1.2065 10.1861 29 1 -0.3633 0.4635 0.9172 30 1 -0.3633 0.5624 -0.8600 31 1 -0.3633 -1.0262 -0.0572 32 1 2.1525 -0.1482 -2.0869 33 1 1.4612 -1.6602 -1.4142 34 1 7.2080 -1.7570 -2.5895 35 1 8.9458 -2.7444 -1.0184 36 1 3.1178 -2.6402 0.7589 37 1 4.1895 -1.2844 1.2110 38 1 3.3962 0.5390 2.0640 39 1 1.5229 -0.9187 3.8116 40 1 3.2201 -1.3824 3.5418 41 1 2.8371 -0.8902 6.1639 42 1 3.3216 -1.0314 9.4632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214749666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:54 Heat of formation + Delta-G solvation = -13.736885 kcal Electronic energy + Delta-G solvation = -26613.346054 eV Core-core repulsion = 22720.479031 eV Total energy + Delta-G solvation = -3892.867023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53874 -39.50324 -38.46753 -37.80678 -34.72009 -33.83696 -33.11344 -31.64472 -31.25627 -29.02625 -27.54150 -26.36199 -25.54931 -24.23231 -22.73679 -21.81858 -20.60732 -19.61158 -19.22931 -18.70459 -17.92723 -17.06893 -16.58501 -16.40039 -15.84033 -15.39142 -15.23502 -14.78172 -14.63187 -14.51395 -14.28048 -13.88174 -13.79541 -13.56735 -13.51450 -13.06841 -12.72412 -12.60443 -12.39470 -12.26176 -11.70844 -11.60285 -11.54681 -11.48609 -11.12656 -11.09327 -10.89217 -10.73146 -10.36642 -10.35466 -10.25510 -10.02298 -9.55564 -9.19461 -9.11571 -8.52404 -8.16894 -8.00052 -6.45336 -3.86090 0.00235 0.98567 1.60604 1.92449 2.47359 2.77485 3.14195 3.25400 3.32415 3.84793 3.94979 3.98907 4.19712 4.25612 4.46407 4.68357 4.73224 4.80227 4.88276 5.04772 5.06110 5.14665 5.21875 5.29234 5.35556 5.40126 5.48626 5.51944 5.54105 5.67178 5.80954 5.82315 5.88646 6.06077 6.15078 6.21418 6.24262 7.04326 7.09000 7.46808 7.52444 7.71072 8.02551 8.56853 9.14485 9.49982 10.00928 10.72303 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.003066 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.547607 B = 9130.969514 C =10999.145393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.094 0.906 4 C 0.110 3.890 5 N -0.613 5.613 6 C 0.618 3.382 7 O -0.526 6.526 8 C -0.274 4.274 9 C -0.109 4.109 10 C 0.057 3.943 11 N -0.527 5.527 12 S 0.437 5.563 13 C 0.057 3.943 14 C 0.084 3.916 15 H 0.102 0.898 16 N -0.654 5.654 17 C 0.046 3.954 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.562 5.562 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.352 0.648 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 -7.954 -18.965 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.347 5.347 6 C 0.405 3.595 7 O -0.403 6.403 8 C -0.408 4.408 9 C -0.145 4.145 10 C -0.135 4.135 11 N -0.356 5.356 12 S 0.592 5.408 13 C -0.070 4.070 14 C -0.028 4.028 15 H 0.120 0.880 16 N -0.286 5.286 17 C -0.086 4.086 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.192 0.808 35 H 0.199 0.801 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.173 0.827 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.832 -7.322 -17.402 18.898 hybrid contribution 1.694 -0.399 -0.813 1.921 sum 0.862 -7.721 -18.215 19.803 Atomic orbital electron populations 1.21679 0.93139 1.01829 1.02810 1.22264 0.96691 1.00384 0.92172 0.88741 1.22626 0.81005 0.99090 0.98503 1.48497 1.08615 1.66021 1.11569 1.16262 0.80497 0.78177 0.84548 1.90826 1.84189 1.47614 1.17682 1.26786 0.99341 1.12055 1.02626 1.22111 0.90390 0.99234 1.02754 1.22276 1.02845 1.01044 0.87356 1.72171 1.15896 1.23995 1.23526 1.82154 1.03023 1.47502 1.08072 1.23399 1.00650 1.01299 0.81679 1.22677 0.94776 0.93214 0.92127 0.88037 1.60179 1.37008 1.31434 0.99964 1.21781 1.01772 0.95495 0.89584 1.19761 0.85087 0.89118 0.83612 1.90539 1.54860 1.19786 1.81481 1.41865 1.59149 1.13399 1.05471 1.19751 1.41712 0.94959 0.86456 0.87853 1.25258 0.97492 0.96774 0.98347 1.69613 1.48917 1.15971 1.19698 0.85813 0.78127 0.80325 0.80177 1.19198 1.20718 1.20754 0.91134 0.92402 0.92624 0.89238 0.90395 0.80768 0.80091 0.90076 0.90673 0.82700 0.89196 0.93648 0.77451 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.17 37.16 0.34 -0.73 16 2 C -0.10 -0.88 3.36 -88.93 -0.30 -1.18 16 3 H 0.09 1.05 8.06 -51.94 -0.42 0.63 16 4 C 0.11 0.99 6.54 -2.31 -0.02 0.97 16 5 N -0.61 -6.53 3.29 -171.37 -0.56 -7.10 16 6 C 0.62 7.80 7.87 -12.66 -0.10 7.70 16 7 O -0.53 -8.05 17.16 5.25 0.09 -7.96 16 8 C -0.27 -3.09 6.64 -35.93 -0.24 -3.33 16 9 C -0.11 -1.05 10.40 -39.77 -0.41 -1.46 16 10 C 0.06 0.53 11.15 -18.75 -0.21 0.32 16 11 N -0.53 -6.26 11.29 21.63 0.24 -6.01 16 12 S 0.44 4.73 19.54 -107.50 -2.10 2.63 16 13 C 0.06 0.54 5.32 -2.98 -0.02 0.52 16 14 C 0.08 0.84 2.88 -66.34 -0.19 0.65 16 15 H 0.10 0.88 7.57 -51.93 -0.39 0.48 16 16 N -0.65 -9.16 5.85 -106.54 -0.62 -9.78 16 17 C 0.05 0.71 6.00 -4.98 -0.03 0.68 16 18 C 0.44 9.76 7.82 -10.99 -0.09 9.68 16 19 O -0.58 -15.20 15.78 5.55 0.09 -15.11 16 20 N -0.56 -13.65 5.29 -10.96 -0.06 -13.71 16 21 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -23.94 13.05 55.50 0.72 -23.22 16 25 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.36 8.11 -51.92 -0.42 -0.06 16 32 H 0.09 0.87 7.81 -51.93 -0.41 0.46 16 33 H 0.08 0.57 8.02 -51.93 -0.42 0.15 16 34 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.78 4.89 -38.01 -0.19 0.59 16 38 H 0.35 5.36 7.93 -39.29 -0.31 5.05 16 39 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 40 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 41 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -33.46 366.93 -8.53 -41.99 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.34 Total: 11.00 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.50 Total: 6.04 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.28 Total: -59.81 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.18 Total: -23.08 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -2.10 Total: 2.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.46 -8.53 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214749666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.251 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds