Wall clock time and date at job start Tue Mar 31 2020 20:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08989 * 110.65480 * 2 1 4 4 C 1.54591 * 110.98699 * 236.83863 * 2 1 3 5 5 N 1.48122 * 103.42248 * 204.37023 * 4 2 1 6 6 C 1.34776 * 127.03433 * 219.28917 * 5 4 2 7 7 O 1.21630 * 120.00042 * 5.18408 * 6 5 4 8 8 C 1.47102 * 119.99692 * 185.18641 * 6 5 4 9 9 C 1.38385 * 127.99558 * 175.16924 * 8 6 5 10 10 C 1.37580 * 111.26279 * 179.97438 * 9 8 6 11 11 N 1.29558 * 117.94766 * 0.02562 * 10 9 8 12 12 S 1.56307 * 110.37900 * 0.02562 * 11 10 9 13 13 C 1.47480 * 105.92650 * 39.02913 * 5 4 2 14 14 C 1.54005 * 107.08978 * 334.77770 * 13 5 4 15 15 H 1.08996 * 110.32660 * 120.19913 * 14 13 5 16 16 N 1.46894 * 110.32812 * 242.41635 * 14 13 5 17 17 C 1.46901 * 111.00225 * 273.54645 * 16 14 13 18 18 C 1.50693 * 109.47373 * 179.97438 * 17 16 14 19 19 O 1.21291 * 120.00274 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99964 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99667 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00253 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99494 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00138 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99699 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47193 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46719 * 120.00394 * 25 23 21 28 28 H 1.48498 * 109.47361 * 240.00006 * 25 23 21 29 29 H 1.08999 * 109.47197 * 296.81054 * 1 2 3 30 30 H 1.08991 * 109.47299 * 56.81436 * 1 2 3 31 31 H 1.09008 * 109.46806 * 176.81022 * 1 2 3 32 32 H 1.08998 * 110.61688 * 85.86043 * 4 2 1 33 33 H 1.08996 * 110.55100 * 322.85508 * 4 2 1 34 34 H 1.08002 * 124.37073 * 359.91817 * 9 8 6 35 35 H 1.07992 * 121.02424 * 179.97438 * 10 9 8 36 36 H 1.09006 * 109.91582 * 94.13815 * 13 5 4 37 37 H 1.08996 * 109.91057 * 215.41188 * 13 5 4 38 38 H 1.00909 * 110.99946 * 37.49540 * 16 14 13 39 39 H 1.09003 * 109.46941 * 299.99701 * 17 16 14 40 40 H 1.09005 * 109.47334 * 59.99431 * 17 16 14 41 41 H 0.96999 * 119.99977 * 359.97438 * 20 18 17 42 42 H 0.96995 * 119.99898 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9145 1.0198 0.0000 4 6 2.0837 -0.7895 -1.2083 5 7 3.4322 -1.2057 -0.7583 6 6 4.5594 -1.2405 -1.4964 7 8 4.5529 -0.8178 -2.6369 8 6 5.7975 -1.7899 -0.9226 9 6 7.0131 -1.9897 -1.5530 10 6 7.9411 -2.5243 -0.6893 11 7 7.5720 -2.7564 0.5308 12 16 6.0766 -2.3493 0.7339 13 6 3.2903 -1.5680 0.6642 14 6 2.0775 -0.7916 1.2101 15 1 1.3221 -1.4830 1.5835 16 7 2.4982 0.1296 2.2742 17 6 2.5206 -0.5471 3.5779 18 6 2.9565 0.4268 4.6421 19 8 3.2218 1.5722 4.3439 20 7 3.0504 0.0254 5.9253 21 6 3.4464 0.9117 6.8935 22 1 3.6835 1.9313 6.6278 23 6 3.5427 0.4980 8.2165 24 7 3.2547 -0.7428 8.5396 25 14 4.0829 1.7054 9.5355 26 1 4.3472 3.0291 8.9167 27 1 3.0093 1.8403 10.5526 28 1 5.3211 1.2065 10.1861 29 1 -0.3633 0.4635 0.9172 30 1 -0.3633 0.5624 -0.8600 31 1 -0.3633 -1.0262 -0.0572 32 1 2.1525 -0.1482 -2.0869 33 1 1.4612 -1.6602 -1.4142 34 1 7.2080 -1.7570 -2.5895 35 1 8.9458 -2.7444 -1.0184 36 1 3.1178 -2.6402 0.7589 37 1 4.1895 -1.2844 1.2110 38 1 3.3962 0.5390 2.0640 39 1 1.5229 -0.9187 3.8116 40 1 3.2201 -1.3824 3.5418 41 1 2.8371 -0.8902 6.1639 42 1 3.3216 -1.0314 9.4632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214749666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:53 Heat of formation + Delta-G solvation = -39.266405 kcal Electronic energy + Delta-G solvation = -26614.453097 eV Core-core repulsion = 22720.479031 eV Total energy + Delta-G solvation = -3893.974066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41656 -40.37301 -39.98669 -38.93938 -36.14940 -35.46168 -33.97131 -33.22157 -32.44543 -30.06430 -28.33935 -27.74288 -26.39501 -25.76904 -23.66006 -22.62640 -21.53871 -20.85698 -20.42668 -19.86344 -19.53637 -17.91373 -17.83132 -17.38368 -16.95183 -16.70127 -16.31707 -16.19542 -15.88099 -15.55565 -15.38626 -15.23253 -14.96690 -14.62823 -14.33332 -14.06861 -13.87732 -13.54275 -13.46329 -13.36908 -13.24560 -12.98768 -12.78642 -12.40038 -12.37693 -12.25773 -12.12068 -11.89345 -11.67755 -11.53804 -11.49078 -11.30510 -10.87964 -10.32168 -10.02846 -9.97916 -9.90704 -9.26492 -8.45094 -5.92814 -0.82460 0.17330 0.81649 1.15056 1.37111 1.42915 1.56178 1.65519 1.88643 2.09242 2.30120 2.89063 3.17036 3.23209 3.38443 3.58880 3.68537 3.95440 3.99818 4.06504 4.09313 4.31049 4.36757 4.41607 4.54112 4.59817 4.61107 4.68055 4.73380 4.77360 4.83825 4.85184 5.08801 5.15052 5.34801 5.43607 5.46094 5.51052 5.92542 6.12923 6.17702 6.33281 6.63178 6.79565 7.15866 7.60256 8.15996 8.72297 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.003066 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.547607 B = 9130.969514 C =10999.145393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 H 0.069 0.931 4 C 0.111 3.889 5 N -0.612 5.612 6 C 0.613 3.387 7 O -0.563 6.563 8 C -0.291 4.291 9 C -0.103 4.103 10 C 0.064 3.936 11 N -0.557 5.557 12 S 0.436 5.564 13 C 0.057 3.943 14 C 0.087 3.913 15 H 0.127 0.873 16 N -0.668 5.668 17 C 0.061 3.939 18 C 0.437 3.563 19 O -0.626 6.626 20 N -0.573 5.573 21 C -0.331 4.331 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.918 5.918 25 Si 0.988 3.012 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.192 0.808 35 H 0.214 0.786 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.342 0.658 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.398 0.602 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 -9.536 -19.347 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.011 4.011 5 N -0.344 5.344 6 C 0.402 3.598 7 O -0.443 6.443 8 C -0.424 4.424 9 C -0.139 4.139 10 C -0.128 4.128 11 N -0.386 5.386 12 S 0.592 5.408 13 C -0.069 4.069 14 C -0.024 4.024 15 H 0.145 0.855 16 N -0.300 5.300 17 C -0.071 4.071 18 C 0.224 3.776 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.461 4.461 22 H 0.094 0.906 23 C -0.211 4.211 24 N -0.559 5.559 25 Si 0.812 3.188 26 H -0.200 1.200 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.209 0.791 35 H 0.231 0.769 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.161 0.839 39 H 0.133 0.867 40 H 0.092 0.908 41 H 0.232 0.768 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.279 -8.942 -17.762 19.927 hybrid contribution 1.830 0.119 -0.774 1.991 sum 0.551 -8.823 -18.536 20.536 Atomic orbital electron populations 1.21645 0.91673 1.03209 1.02396 1.22186 0.97758 0.98998 0.92039 0.91218 1.22747 0.80534 0.99932 0.97849 1.48577 1.08742 1.65117 1.11997 1.16460 0.81189 0.77909 0.84286 1.90799 1.84828 1.49494 1.19167 1.26819 0.99542 1.12916 1.03153 1.22426 0.89792 0.98167 1.03555 1.22746 1.04049 0.99531 0.86464 1.72215 1.16474 1.25192 1.24723 1.82010 1.03029 1.47878 1.07862 1.23473 0.99996 1.02725 0.80753 1.22795 0.95388 0.93065 0.91132 0.85522 1.60172 1.36549 1.32859 1.00379 1.21668 1.03462 0.94017 0.87927 1.20971 0.82865 0.89635 0.84101 1.90511 1.56184 1.22273 1.82253 1.41924 1.59883 1.13252 1.05978 1.19659 1.43767 0.94668 0.88020 0.90555 1.25954 0.97089 0.98403 0.99622 1.69661 1.48985 1.16863 1.20425 0.84944 0.78208 0.77951 0.77703 1.19976 1.19630 1.19738 0.92578 0.91690 0.90449 0.90219 0.87719 0.79106 0.76943 0.87346 0.91520 0.83871 0.86739 0.90798 0.76834 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.17 71.98 0.66 -1.11 16 2 C -0.09 -1.53 3.36 -9.70 -0.03 -1.57 16 3 H 0.07 1.55 8.06 -2.39 -0.02 1.54 16 4 C 0.11 1.81 6.54 86.61 0.57 2.37 16 5 N -0.61 -12.25 3.29 -814.34 -2.68 -14.93 16 6 C 0.61 15.15 7.87 86.57 0.68 15.83 16 7 O -0.56 -17.23 17.16 -4.13 -0.07 -17.30 16 8 C -0.29 -6.32 6.64 24.63 0.16 -6.16 16 9 C -0.10 -1.85 10.40 22.15 0.23 -1.62 16 10 C 0.06 1.09 11.15 84.87 0.95 2.04 16 11 N -0.56 -12.58 11.29 -85.48 -0.96 -13.55 16 12 S 0.44 9.05 19.54 -56.49 -1.10 7.95 16 13 C 0.06 0.96 5.32 86.53 0.46 1.42 16 14 C 0.09 1.54 2.88 45.81 0.13 1.68 16 15 H 0.13 1.67 7.57 -2.39 -0.02 1.65 16 16 N -0.67 -17.98 5.85 -490.99 -2.87 -20.85 16 17 C 0.06 1.79 6.00 85.55 0.51 2.30 16 18 C 0.44 19.51 7.82 87.65 0.69 20.19 16 19 O -0.63 -33.52 15.78 -3.06 -0.05 -33.56 16 20 N -0.57 -28.07 5.29 -306.98 -1.62 -29.70 16 21 C -0.33 -18.43 9.68 84.04 0.81 -17.61 16 22 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 23 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 24 N -0.92 -48.36 13.05 21.66 0.28 -48.07 16 25 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.72 8.11 -2.38 -0.02 0.70 16 32 H 0.08 1.49 7.81 -2.39 -0.02 1.47 16 33 H 0.10 1.19 8.02 -2.39 -0.02 1.17 16 34 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.21 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.07 1.29 4.89 -11.24 -0.05 1.24 16 38 H 0.34 10.43 7.93 -89.69 -0.71 9.72 16 39 H 0.11 2.84 8.08 -2.39 -0.02 2.82 16 40 H 0.07 1.78 8.11 -2.38 -0.02 1.76 16 41 H 0.40 18.28 7.90 -92.71 -0.73 17.55 16 42 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -74.27 366.93 -1.17 -75.45 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: -0.41 Total: 32.41 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.29 Total: 17.67 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -7.86 Total: -127.11 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.12 Total: -50.86 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 9.05 SS G_CDS: -1.10 Total: 7.95 kcal Total: -74.27 -1.17 -75.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214749666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.179 kcal (2) G-P(sol) polarization free energy of solvation -74.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds