Wall clock time and date at job start Tue Mar 31 2020 20:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.65796 * 2 1 4 4 C 1.54599 * 110.99044 * 236.84718 * 2 1 3 5 5 N 1.48121 * 103.42310 * 204.36875 * 4 2 1 6 6 C 1.34770 * 127.03413 * 219.28351 * 5 4 2 7 7 O 1.21623 * 120.00015 * 355.96214 * 6 5 4 8 8 C 1.47254 * 119.99943 * 176.23691 * 6 5 4 9 9 N 1.30564 * 125.54395 * 186.32792 * 8 6 5 10 10 C 1.30697 * 115.90771 * 180.02562 * 9 8 6 11 11 C 1.34233 * 115.78476 * 359.97438 * 10 9 8 12 12 S 1.71071 * 109.09084 * 359.73645 * 11 10 9 13 13 C 1.47488 * 105.92775 * 39.02391 * 5 4 2 14 14 C 1.53998 * 107.08729 * 334.77908 * 13 5 4 15 15 H 1.08997 * 110.32925 * 120.19568 * 14 13 5 16 16 N 1.46906 * 110.32683 * 242.41496 * 14 13 5 17 17 C 1.46896 * 110.99910 * 273.54779 * 16 14 13 18 18 C 1.50694 * 109.47289 * 179.97438 * 17 16 14 19 19 O 1.21300 * 120.00004 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00187 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99619 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00508 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99503 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00149 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99932 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47220 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47014 * 120.00078 * 25 23 21 28 28 H 1.48495 * 109.47434 * 239.99990 * 25 23 21 29 29 H 1.09000 * 109.47201 * 296.80764 * 1 2 3 30 30 H 1.09000 * 109.47640 * 56.80755 * 1 2 3 31 31 H 1.09006 * 109.47182 * 176.80543 * 1 2 3 32 32 H 1.09008 * 110.61657 * 85.85843 * 4 2 1 33 33 H 1.08997 * 110.54799 * 322.85148 * 4 2 1 34 34 H 1.07997 * 122.11106 * 179.97438 * 10 9 8 35 35 H 1.08004 * 125.45833 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.90966 * 94.13847 * 13 5 4 37 37 H 1.08997 * 109.90787 * 215.41209 * 13 5 4 38 38 H 1.00901 * 110.99895 * 37.49703 * 16 14 13 39 39 H 1.09003 * 109.47111 * 299.99443 * 17 16 14 40 40 H 1.09005 * 109.47655 * 59.99504 * 17 16 14 41 41 H 0.96998 * 119.99887 * 359.97438 * 20 18 17 42 42 H 0.96996 * 120.00316 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7894 -1.2084 5 7 3.4322 -1.2055 -0.7585 6 6 4.5593 -1.2403 -1.4966 7 8 4.5176 -0.9766 -2.6831 8 6 5.8403 -1.6035 -0.8676 9 7 7.0097 -1.5591 -1.4466 10 6 8.0257 -1.9251 -0.7104 11 6 7.7325 -2.2982 0.5452 12 16 6.0450 -2.1610 0.7902 13 6 3.2903 -1.5680 0.6641 14 6 2.0775 -0.7916 1.2100 15 1 1.3221 -1.4830 1.5833 16 7 2.4983 0.1295 2.2743 17 6 2.5207 -0.5473 3.5778 18 6 2.9564 0.4266 4.6420 19 8 3.2227 1.5718 4.3438 20 7 3.0504 0.0251 5.9253 21 6 3.4464 0.9113 6.8935 22 1 3.6834 1.9309 6.6280 23 6 3.5427 0.4976 8.2164 24 7 3.2537 -0.7430 8.5396 25 14 4.0829 1.7048 9.5356 26 1 4.3471 3.0286 8.9169 27 1 3.0092 1.8397 10.5527 28 1 5.3210 1.2059 10.1861 29 1 -0.3633 0.4635 0.9172 30 1 -0.3634 0.5626 -0.8600 31 1 -0.3634 -1.0261 -0.0573 32 1 2.1524 -0.1478 -2.0871 33 1 1.4612 -1.6601 -1.4144 34 1 9.0373 -1.9273 -1.0885 35 1 8.4481 -2.6274 1.2842 36 1 3.1179 -2.6401 0.7586 37 1 4.1895 -1.2843 1.2108 38 1 3.3962 0.5390 2.0640 39 1 1.5229 -0.9188 3.8115 40 1 3.2202 -1.3825 3.5417 41 1 2.8371 -0.8906 6.1638 42 1 3.3213 -1.0320 9.4631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216036239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:32 Heat of formation + Delta-G solvation = -7.092720 kcal Electronic energy + Delta-G solvation = -26677.675379 eV Core-core repulsion = 22785.096468 eV Total energy + Delta-G solvation = -3892.578910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.67058 -39.78936 -38.47270 -37.80131 -34.74852 -33.86439 -33.07653 -31.28860 -30.81294 -29.06722 -27.69796 -26.40445 -25.64274 -24.26120 -22.73127 -21.71906 -20.62279 -19.56121 -19.24574 -18.68875 -17.95512 -17.06093 -16.58260 -16.42915 -15.95616 -15.43919 -15.28929 -14.94174 -14.61281 -14.47398 -14.31504 -13.90941 -13.77908 -13.69164 -13.52210 -13.13521 -12.78114 -12.62156 -12.43210 -12.28829 -11.86782 -11.69398 -11.59303 -11.17663 -11.12023 -11.07079 -10.92153 -10.66900 -10.39008 -10.28247 -9.98843 -9.95655 -9.58317 -9.24837 -9.19260 -8.55206 -8.19768 -8.02916 -6.48162 -3.88974 -0.04363 0.87753 1.35127 2.07279 2.29871 2.94028 3.11791 3.23270 3.30204 3.76404 3.83250 3.93777 4.15848 4.22275 4.37723 4.58427 4.75852 4.84034 4.86358 5.02370 5.03132 5.05597 5.11994 5.19196 5.33179 5.38138 5.46616 5.51917 5.63973 5.69851 5.77319 5.80041 5.85714 6.04764 6.13459 6.21918 6.94414 7.04822 7.27621 7.44027 7.49727 7.71850 7.99743 8.53987 9.11725 9.47041 9.98028 10.69441 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003101 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.784514 B = 9028.580734 C =10868.458177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.612 5.612 6 C 0.616 3.384 7 O -0.503 6.503 8 C -0.013 4.013 9 N -0.399 5.399 10 C 0.024 3.976 11 C -0.276 4.276 12 S 0.205 5.795 13 C 0.055 3.945 14 C 0.085 3.915 15 H 0.103 0.897 16 N -0.654 5.654 17 C 0.047 3.953 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.562 5.562 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.352 0.648 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 -8.434 -15.082 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.113 0.887 4 C -0.009 4.009 5 N -0.347 5.347 6 C 0.400 3.600 7 O -0.377 6.377 8 C -0.288 4.288 9 N -0.115 5.115 10 C -0.132 4.132 11 C -0.416 4.416 12 S 0.460 5.540 13 C -0.071 4.071 14 C -0.027 4.027 15 H 0.121 0.879 16 N -0.286 5.286 17 C -0.086 4.086 18 C 0.224 3.776 19 O -0.466 6.466 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.196 0.804 35 H 0.202 0.798 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.173 0.827 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.774 -7.341 -15.418 17.094 hybrid contribution 2.236 -0.775 0.795 2.496 sum 1.462 -8.116 -14.623 16.788 Atomic orbital electron populations 1.21677 0.93023 1.01885 1.02858 1.22279 0.96772 1.00399 0.92087 0.88667 1.22648 0.80624 0.99170 0.98478 1.48431 1.08429 1.66244 1.11609 1.16200 0.80416 0.78035 0.85333 1.90858 1.84757 1.48265 1.13802 1.27357 0.96864 1.10053 0.94520 1.66596 0.97389 1.12622 1.34902 1.21823 0.99434 1.01797 0.90149 1.27225 1.03412 1.08420 1.02559 1.84398 1.00114 1.56640 1.12848 1.23464 1.00504 1.01461 0.81713 1.22681 0.94680 0.93223 0.92150 0.87944 1.60177 1.37015 1.31413 0.99954 1.21777 1.01762 0.95455 0.89596 1.19764 0.85101 0.89122 0.83613 1.90545 1.54805 1.19787 1.81476 1.41864 1.59168 1.13390 1.05466 1.19752 1.41713 0.94968 0.86458 0.87849 1.25255 0.97484 0.96774 0.98337 1.69611 1.48891 1.15995 1.19722 0.85815 0.78132 0.80332 0.80182 1.19190 1.20699 1.20760 0.91108 0.92336 0.92578 0.89142 0.90207 0.80401 0.79826 0.89846 0.90538 0.82696 0.89178 0.93738 0.77464 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.17 37.15 0.34 -0.71 16 2 C -0.10 -0.88 3.35 -88.93 -0.30 -1.17 16 3 H 0.10 1.04 8.06 -51.93 -0.42 0.62 16 4 C 0.11 1.03 6.51 -2.31 -0.02 1.01 16 5 N -0.61 -6.74 3.29 -171.30 -0.56 -7.30 16 6 C 0.62 8.59 7.88 -12.60 -0.10 8.49 16 7 O -0.50 -8.61 17.31 5.26 0.09 -8.52 16 8 C -0.01 -0.16 7.39 -14.43 -0.11 -0.27 16 9 N -0.40 -5.53 10.60 -11.51 -0.12 -5.66 16 10 C 0.02 0.26 11.24 -19.45 -0.22 0.04 16 11 C -0.28 -2.53 11.09 29.32 0.33 -2.21 16 12 S 0.21 2.06 18.83 -107.50 -2.02 0.03 16 13 C 0.06 0.52 5.38 -2.98 -0.02 0.50 16 14 C 0.08 0.83 2.88 -66.34 -0.19 0.64 16 15 H 0.10 0.86 7.57 -51.93 -0.39 0.46 16 16 N -0.65 -8.99 5.85 -106.54 -0.62 -9.61 16 17 C 0.05 0.70 6.00 -4.98 -0.03 0.67 16 18 C 0.44 9.59 7.82 -10.99 -0.09 9.50 16 19 O -0.58 -14.99 15.78 5.54 0.09 -14.91 16 20 N -0.56 -13.41 5.29 -10.96 -0.06 -13.46 16 21 C -0.30 -8.03 9.68 -14.93 -0.14 -8.17 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -23.58 13.05 55.50 0.72 -22.85 16 25 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 32 H 0.09 0.88 7.89 -51.92 -0.41 0.47 16 33 H 0.08 0.59 8.02 -51.93 -0.42 0.17 16 34 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.78 4.38 -29.27 -0.13 0.66 16 38 H 0.35 5.29 7.93 -39.29 -0.31 4.98 16 39 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 40 H 0.04 0.58 8.11 -51.93 -0.42 0.16 16 41 H 0.39 8.87 7.90 -40.82 -0.32 8.54 16 42 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -33.71 366.80 -7.91 -41.62 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.29 Total: 10.91 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -0.64 Total: 8.83 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.64 Total: -58.89 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.18 Total: -23.43 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.02 Total: 0.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.71 -7.91 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216036239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.527 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds