Wall clock time and date at job start Tue Mar 31 2020 20:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21280 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00100 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.47018 * 180.02562 * 8 6 5 10 10 C 1.34772 * 120.00194 * 179.97438 * 9 8 6 11 11 O 1.21634 * 119.99655 * 0.02562 * 10 9 8 12 12 C 1.47267 * 120.00398 * 180.02562 * 10 9 8 13 13 C 1.35203 * 123.14284 * 180.02562 * 12 10 9 14 14 S 1.70945 * 108.82859 * 179.97438 * 13 12 10 15 15 C 1.70769 * 91.12556 * 359.97438 * 14 13 12 16 16 N 1.28647 * 110.56314 * 359.76873 * 15 14 13 17 17 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 18 18 C 1.54914 * 104.82992 * 24.12623 * 17 5 4 19 19 H 1.09000 * 111.00339 * 81.07133 * 18 17 5 20 20 N 1.46505 * 111.00202 * 204.91694 * 18 17 5 21 21 C 1.36935 * 120.00217 * 273.54861 * 20 18 17 22 22 H 1.08006 * 119.99642 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00007 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00356 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99913 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47272 * 59.99546 * 25 23 21 27 27 H 1.48501 * 109.47288 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46873 * 299.99485 * 25 23 21 29 29 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 30 30 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 31 31 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 32 32 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 33 33 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 34 34 H 1.08996 * 109.47275 * 300.00392 * 8 6 5 35 35 H 1.09002 * 109.46941 * 60.00490 * 8 6 5 36 36 H 0.97003 * 119.99961 * 0.02562 * 9 8 6 37 37 H 1.08002 * 125.58658 * 359.92573 * 13 12 10 38 38 H 1.07998 * 124.71784 * 180.02562 * 15 14 13 39 39 H 1.08999 * 110.36956 * 142.96999 * 17 5 4 40 40 H 1.09001 * 110.36709 * 265.18192 * 17 5 4 41 41 H 0.96998 * 119.99743 * 93.55096 * 20 18 17 42 42 H 0.96989 * 120.00348 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 3.7119 -2.5604 -2.6621 8 6 5.1630 -3.1076 -0.8831 9 7 5.8026 -3.9477 -1.8987 10 6 6.8824 -4.6879 -1.5785 11 8 7.3256 -4.6587 -0.4461 12 6 7.5258 -5.5319 -2.5994 13 6 8.6103 -6.2992 -2.3480 14 16 9.0492 -7.1208 -3.7813 15 6 7.7600 -6.3935 -4.6330 16 7 7.0888 -5.6157 -3.8587 17 6 3.4656 -1.2541 0.6849 18 6 2.0831 -0.7972 1.2139 19 1 1.4480 -1.6542 1.4382 20 7 2.2294 0.0667 2.3880 21 6 2.3264 -0.4860 3.6370 22 1 2.2947 -1.5590 3.7567 23 6 2.4645 0.3326 4.7495 24 7 2.5027 1.6401 4.6038 25 14 2.5976 -0.4215 6.4533 26 1 3.7873 -1.3084 6.5106 27 1 2.7355 0.6584 7.4633 28 1 1.3751 -1.2140 6.7407 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3634 0.5414 0.8735 31 1 -0.3633 0.4858 -0.9056 32 1 2.3741 -0.1026 -1.9977 33 1 1.3121 -1.4741 -1.5791 34 1 5.8817 -2.3780 -0.5104 35 1 4.8185 -3.7322 -0.0589 36 1 5.4494 -3.9706 -2.8019 37 1 9.1167 -6.3793 -1.3974 38 1 7.5365 -6.5661 -5.6754 39 1 3.7975 -2.1479 1.2131 40 1 4.1987 -0.4550 0.7952 41 1 2.2575 1.0303 2.2805 42 1 2.5996 2.2121 5.3810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216247909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:24 Heat of formation + Delta-G solvation = -7.129572 kcal Electronic energy + Delta-G solvation = -26090.841660 eV Core-core repulsion = 22198.261152 eV Total energy + Delta-G solvation = -3892.580509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82378 -39.99802 -38.76225 -37.66685 -34.60170 -34.14404 -32.63509 -31.09209 -30.77650 -28.86817 -27.57836 -26.41578 -25.25990 -24.01441 -22.77804 -21.56575 -20.17974 -19.99330 -19.50803 -19.04583 -17.27435 -17.16014 -16.77541 -16.31743 -15.97292 -15.82590 -15.45609 -14.98470 -14.80148 -14.31367 -14.04057 -13.82880 -13.72059 -13.46750 -13.18131 -13.04349 -13.01679 -12.68235 -12.37911 -12.36768 -11.92593 -11.71342 -11.14507 -11.03814 -10.77556 -10.66339 -10.45727 -10.30828 -10.28334 -10.15795 -9.98439 -9.96376 -9.75820 -9.52647 -9.23896 -9.05415 -8.47907 -7.13146 -5.88155 -3.19439 0.12812 0.82860 1.17824 1.63634 2.59191 2.69324 3.10487 3.31429 3.39328 3.44609 3.44814 3.75366 4.40478 4.53711 4.58817 4.80202 4.90219 4.95463 5.05914 5.15131 5.26883 5.30726 5.48359 5.49079 5.59016 5.69735 5.77247 5.85782 5.95964 6.08565 6.15000 6.19962 6.29651 6.40355 6.42260 6.55246 6.81160 6.92940 7.38036 7.58933 7.61664 7.95995 8.12215 8.29177 9.41370 9.93892 10.28813 11.33535 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.002293 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.538883 B =12205.531786 C =13917.269896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.606 5.606 6 C 0.522 3.478 7 O -0.550 6.550 8 C 0.103 3.897 9 N -0.699 5.699 10 C 0.595 3.405 11 O -0.532 6.532 12 C 0.008 3.992 13 C -0.220 4.220 14 S 0.210 5.790 15 C -0.001 4.001 16 N -0.439 5.439 17 C 0.066 3.934 18 C 0.178 3.822 19 H 0.066 0.934 20 N -0.710 5.710 21 C -0.250 4.250 22 H 0.072 0.928 23 C -0.007 4.007 24 N -0.929 5.929 25 Si 0.908 3.092 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.420 0.580 37 H 0.192 0.808 38 H 0.207 0.793 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.387 0.613 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 -14.642 -19.015 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.104 0.896 4 C -0.005 4.005 5 N -0.339 5.339 6 C 0.309 3.691 7 O -0.429 6.429 8 C -0.024 4.024 9 N -0.353 5.353 10 C 0.378 3.622 11 O -0.409 6.409 12 C -0.127 4.127 13 C -0.362 4.362 14 S 0.465 5.535 15 C -0.300 4.300 16 N -0.153 5.153 17 C -0.060 4.060 18 C 0.065 3.935 19 H 0.084 0.916 20 N -0.349 5.349 21 C -0.381 4.381 22 H 0.090 0.910 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.739 3.261 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.260 0.740 37 H 0.209 0.791 38 H 0.223 0.777 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.222 0.778 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.796 -15.198 -19.165 26.348 hybrid contribution -0.396 0.559 1.212 1.392 sum 9.400 -14.639 -17.953 24.999 Atomic orbital electron populations 1.21655 0.93801 1.01844 1.01843 1.22529 0.96528 0.99833 0.94412 0.89622 1.22005 0.87195 0.94330 0.97013 1.48431 1.29690 1.43105 1.12701 1.20022 0.83594 0.79421 0.86049 1.90677 1.71067 1.64840 1.16347 1.21099 0.94221 0.95375 0.91673 1.45511 1.29775 1.44413 1.15628 1.16989 0.79916 0.79106 0.86210 1.90859 1.64117 1.65816 1.20123 1.20417 0.97463 1.03074 0.91793 1.26670 1.01649 1.01872 1.06038 1.82971 1.29941 1.41419 0.99175 1.28503 0.97050 0.99238 1.05254 1.66979 1.28561 1.17679 1.02125 1.23679 1.03026 1.01248 0.78026 1.21409 0.91584 0.93778 0.86704 0.91581 1.42283 1.86804 1.05161 1.00695 1.19179 1.43407 0.91889 0.83621 0.90998 1.24763 1.02182 0.95342 0.98051 1.69641 1.56265 1.02106 1.29593 0.86265 0.78016 0.77859 0.84009 1.21052 1.21652 1.21149 0.92800 0.91351 0.93140 0.91787 0.91435 0.87918 0.87898 0.74013 0.79099 0.77690 0.90866 0.90685 0.77797 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.14 37.15 0.34 -1.48 16 2 C -0.11 -1.70 3.19 -88.65 -0.28 -1.98 16 3 H 0.09 1.32 8.00 -51.93 -0.42 0.91 16 4 C 0.12 1.68 6.46 -3.07 -0.02 1.66 16 5 N -0.61 -9.21 3.33 -170.52 -0.57 -9.78 16 6 C 0.52 8.02 7.92 -10.98 -0.09 7.94 16 7 O -0.55 -9.65 15.99 5.56 0.09 -9.56 16 8 C 0.10 1.42 5.16 -5.19 -0.03 1.40 16 9 N -0.70 -9.61 5.52 -62.61 -0.35 -9.96 16 10 C 0.59 8.37 7.80 -12.59 -0.10 8.27 16 11 O -0.53 -8.76 16.71 5.25 0.09 -8.68 16 12 C 0.01 0.09 6.70 -84.53 -0.57 -0.48 16 13 C -0.22 -1.95 10.62 29.65 0.31 -1.64 16 14 S 0.21 1.12 22.97 -107.50 -2.47 -1.35 16 15 C 0.00 0.00 12.17 51.43 0.63 0.62 16 16 N -0.44 -4.64 10.12 -12.36 -0.13 -4.76 16 17 C 0.07 1.08 6.39 -2.53 -0.02 1.06 16 18 C 0.18 3.19 3.14 -65.64 -0.21 2.98 16 19 H 0.07 1.22 8.03 -51.93 -0.42 0.81 16 20 N -0.71 -16.17 5.28 -51.21 -0.27 -16.44 16 21 C -0.25 -6.46 9.98 -15.06 -0.15 -6.61 16 22 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 23 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 24 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 25 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 29 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.94 7.82 -51.93 -0.41 0.54 16 34 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.10 1.37 7.85 -51.93 -0.41 0.97 16 36 H 0.42 5.85 6.96 -40.82 -0.28 5.56 16 37 H 0.19 1.53 8.03 -52.49 -0.42 1.11 16 38 H 0.21 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.07 1.16 7.48 -51.93 -0.39 0.77 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.39 9.45 7.72 -40.82 -0.31 9.13 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -32.29 372.92 -8.11 -40.40 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.56 Total: 12.49 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -0.27 Total: 11.47 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.58 Total: -66.92 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.18 Total: -18.24 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.47 Total: -1.35 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.29 -8.11 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216247909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.271 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds