Wall clock time and date at job start Tue Mar 31 2020 20:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47418 * 2 1 4 4 C 1.53006 * 109.47174 * 120.00158 * 2 1 3 5 5 N 1.46500 * 109.47142 * 174.99878 * 4 2 1 6 6 C 1.46497 * 119.99989 * 89.99835 * 5 4 2 7 7 C 1.36939 * 119.99908 * 270.00089 * 5 4 2 8 8 H 1.07996 * 120.00254 * 141.73543 * 7 5 4 9 9 C 1.38813 * 119.99832 * 321.72864 * 7 5 4 10 10 N 1.31618 * 119.99983 * 157.45479 * 9 7 5 11 11 Si 1.86807 * 120.00087 * 337.45154 * 9 7 5 12 12 H 1.48499 * 109.46960 * 95.66591 * 11 9 7 13 13 H 1.48501 * 109.47025 * 215.66675 * 11 9 7 14 14 H 1.48504 * 109.46932 * 335.66519 * 11 9 7 15 15 N 1.46501 * 109.47073 * 239.99670 * 2 1 3 16 16 C 1.34778 * 119.99648 * 85.00145 * 15 2 1 17 17 O 1.21283 * 120.00165 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99988 * 179.97438 * 16 15 2 19 19 H 1.09000 * 110.67064 * 306.76705 * 18 16 15 20 20 C 1.54714 * 110.74825 * 70.18539 * 18 16 15 21 21 C 1.51641 * 101.93213 * 143.60585 * 20 18 16 22 22 C 1.37747 * 132.15502 * 164.14190 * 21 20 18 23 23 C 1.38450 * 119.96655 * 180.91604 * 22 21 20 24 24 Cl 1.73605 * 120.12979 * 179.97438 * 23 22 21 25 25 C 1.38386 * 119.73928 * 0.26795 * 23 22 21 26 26 C 1.37925 * 120.33668 * 359.28362 * 25 23 22 27 27 C 1.38877 * 107.04704 * 344.66160 * 21 20 18 28 28 O 1.36161 * 111.22467 * 358.85280 * 27 21 20 29 29 H 1.08999 * 109.46762 * 59.99821 * 1 2 3 30 30 H 1.08994 * 109.47247 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46565 * 300.00079 * 1 2 3 32 32 H 1.09004 * 109.46825 * 294.99469 * 4 2 1 33 33 H 1.08995 * 109.46859 * 54.99625 * 4 2 1 34 34 H 1.09006 * 109.47199 * 85.63299 * 6 5 4 35 35 H 1.09001 * 109.47389 * 205.63199 * 6 5 4 36 36 H 1.08999 * 109.47368 * 325.63049 * 6 5 4 37 37 H 0.97001 * 119.99933 * 180.02562 * 10 9 7 38 38 H 0.96994 * 120.00513 * 265.00202 * 15 2 1 39 39 H 1.08992 * 110.93399 * 25.44563 * 20 18 16 40 40 H 1.08998 * 110.93731 * 261.76428 * 20 18 16 41 41 H 1.07997 * 120.01570 * 0.93391 * 22 21 20 42 42 H 1.08003 * 119.82981 * 179.55674 * 25 23 22 43 43 H 1.07998 * 119.87388 * 180.25669 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1906 6 6 4.3343 0.2339 1.7612 7 6 4.0849 -1.9159 0.6022 8 1 4.9789 -1.7942 0.0086 9 6 3.5289 -3.1769 0.7690 10 7 3.7827 -4.1287 -0.1038 11 14 2.4203 -3.5228 2.2323 12 1 1.0011 -3.3545 1.8288 13 1 2.6399 -4.9144 2.7015 14 1 2.7388 -2.5743 3.3296 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0183 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6499 -0.7286 -3.5874 19 1 3.5957 -1.2301 -3.3826 20 6 1.5949 -1.7321 -4.1106 21 6 1.7674 -1.6136 -5.6125 22 6 1.3550 -2.4124 -6.6563 23 6 1.6733 -2.0674 -7.9588 24 17 1.1564 -3.0714 -9.2773 25 6 2.4104 -0.9223 -8.2050 26 6 2.8158 -0.1169 -7.1613 27 6 2.4967 -0.4556 -5.8486 28 8 2.7874 0.1895 -4.6853 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.7517 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2951 34 1 4.4782 0.0498 2.8260 35 1 5.3024 0.2440 1.2603 36 1 3.8433 1.1971 1.6222 37 1 3.3939 -5.0097 0.0125 38 1 2.2490 -1.6318 -1.1526 39 1 0.5908 -1.4341 -3.8091 40 1 1.8179 -2.7437 -3.7716 41 1 0.7835 -3.3072 -6.4587 42 1 2.6656 -0.6556 -9.2200 43 1 3.3872 0.7772 -7.3623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275598798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:30 Heat of formation + Delta-G solvation = -36.829992 kcal Electronic energy + Delta-G solvation = -27397.969607 eV Core-core repulsion = 23469.764734 eV Total energy + Delta-G solvation = -3928.204873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52884 -40.58736 -38.85291 -38.14507 -37.14000 -35.59839 -34.12089 -33.62897 -32.23877 -30.96834 -30.29816 -28.32815 -27.44000 -25.82453 -23.62771 -23.28936 -22.87952 -22.32380 -21.29773 -19.14238 -18.79542 -18.17036 -18.09344 -17.50176 -17.42817 -16.70641 -16.10348 -15.89033 -15.31991 -15.30462 -15.05871 -14.99835 -14.85048 -14.44101 -14.37581 -14.19460 -14.13188 -13.69562 -13.54359 -13.44576 -13.33340 -13.14298 -12.88872 -12.78386 -12.60389 -12.43090 -12.35531 -12.18020 -11.84836 -11.79348 -11.67588 -11.48716 -10.84897 -10.60207 -10.07813 -9.98498 -9.18631 -8.73686 -8.15637 -5.53336 0.01892 0.13531 1.07944 1.33145 1.42309 1.49311 1.56942 1.71721 2.36917 2.44235 2.63409 3.06980 3.19469 3.35180 3.44109 3.69185 3.73582 3.94324 4.00886 4.02795 4.15984 4.27690 4.39313 4.42112 4.57628 4.59776 4.62848 4.70796 4.75108 4.78350 4.83122 4.89770 5.01397 5.07801 5.11465 5.12222 5.22504 5.29641 5.32764 5.60806 5.92432 5.97429 6.21209 6.59824 6.99043 7.20609 7.63393 8.09183 9.01825 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.003045 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.049278 B = 9191.743592 C = 9952.486892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.068 0.932 4 C 0.125 3.875 5 N -0.624 5.624 6 C 0.123 3.877 7 C -0.254 4.254 8 H 0.042 0.958 9 C 0.000 4.000 10 N -0.930 5.930 11 Si 0.922 3.078 12 H -0.265 1.265 13 H -0.314 1.314 14 H -0.269 1.269 15 N -0.682 5.682 16 C 0.520 3.480 17 O -0.574 6.574 18 C 0.066 3.934 19 H 0.116 0.884 20 C -0.088 4.088 21 C -0.166 4.166 22 C -0.060 4.060 23 C -0.069 4.069 24 Cl -0.058 7.058 25 C -0.066 4.066 26 C -0.127 4.127 27 C 0.086 3.914 28 O -0.297 6.297 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.018 0.982 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.265 0.735 38 H 0.413 0.587 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.153 0.847 42 H 0.171 0.829 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.099 3.473 -12.061 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.018 3.982 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.348 5.348 6 C -0.022 4.022 7 C -0.384 4.384 8 H 0.060 0.940 9 C -0.198 4.198 10 N -0.573 5.573 11 Si 0.751 3.249 12 H -0.191 1.191 13 H -0.243 1.243 14 H -0.194 1.194 15 N -0.333 5.333 16 C 0.305 3.695 17 O -0.455 6.455 18 C 0.007 3.993 19 H 0.134 0.866 20 C -0.125 4.125 21 C -0.167 4.167 22 C -0.078 4.078 23 C -0.096 4.096 24 Cl -0.030 7.030 25 C -0.085 4.085 26 C -0.146 4.146 27 C 0.041 3.959 28 O -0.210 6.210 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.250 0.750 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.170 0.830 42 H 0.188 0.812 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.265 4.296 -12.155 14.797 hybrid contribution -0.027 -1.077 0.868 1.383 sum -7.292 3.219 -11.286 13.817 Atomic orbital electron populations 1.22101 0.93964 1.02426 1.02884 1.21708 0.94297 0.96828 0.85361 0.91360 1.21648 0.83998 0.98869 0.95579 1.44150 1.00960 1.21725 1.67932 1.21154 0.94645 0.90508 0.95847 1.18542 1.10923 0.84991 1.23957 0.93999 1.25845 1.00166 0.95192 0.98630 1.69940 1.47772 1.04376 1.35169 0.86207 0.79692 0.75688 0.83279 1.19142 1.24299 1.19371 1.45879 1.64325 1.14983 1.08118 1.20111 0.77883 0.86763 0.84777 1.90645 1.52282 1.16945 1.85629 1.23202 1.01464 0.88859 0.85800 0.86627 1.21678 0.99285 1.01024 0.90546 1.20683 1.02706 0.97732 0.95576 1.20293 0.98807 0.99574 0.89169 1.20747 1.04210 0.95745 0.88881 1.98367 1.89654 1.68452 1.46484 1.21043 0.95328 0.91712 1.00395 1.20462 1.03786 1.02962 0.87376 1.20107 0.95264 0.92204 0.88371 1.86904 1.85325 1.35614 1.13170 0.93141 0.92152 0.89378 0.89833 0.93335 0.96408 0.94453 0.93222 0.92608 0.74968 0.88319 0.86223 0.82980 0.81171 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.48 71.98 0.68 -3.72 16 2 C 0.12 4.33 2.88 44.99 0.13 4.46 16 3 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 4 C 0.12 4.58 4.18 86.38 0.36 4.94 16 5 N -0.62 -26.44 2.36 -726.92 -1.71 -28.15 16 6 C 0.12 4.54 10.70 127.77 1.37 5.91 16 7 C -0.25 -12.64 8.31 84.03 0.70 -11.94 16 8 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 9 C 0.00 0.00 5.01 84.86 0.43 0.42 16 10 N -0.93 -49.65 13.97 21.65 0.30 -49.35 16 11 Si 0.92 40.58 25.09 68.60 1.72 42.30 16 12 H -0.26 -10.73 6.68 99.48 0.66 -10.06 16 13 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 N -0.68 -25.41 4.49 -442.52 -1.99 -27.40 16 16 C 0.52 19.90 7.09 87.66 0.62 20.52 16 17 O -0.57 -25.37 16.24 15.16 0.25 -25.12 16 18 C 0.07 2.23 4.05 30.43 0.12 2.35 16 19 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 20 C -0.09 -2.43 6.64 30.73 0.20 -2.22 16 21 C -0.17 -4.39 6.27 -19.53 -0.12 -4.52 16 22 C -0.06 -1.33 9.82 22.20 0.22 -1.11 16 23 C -0.07 -1.39 6.33 22.36 0.14 -1.25 16 24 Cl -0.06 -1.04 28.97 -2.72 -0.08 -1.12 16 25 C -0.07 -1.23 9.81 22.23 0.22 -1.01 16 26 C -0.13 -2.87 10.06 22.45 0.23 -2.64 16 27 C 0.09 2.49 7.04 22.67 0.16 2.65 16 28 O -0.30 -10.47 10.39 -77.18 -0.80 -11.27 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.08 2.62 8.07 -2.38 -0.02 2.60 16 33 H 0.05 1.90 3.39 -2.39 -0.01 1.89 16 34 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.04 1.41 8.00 -2.39 -0.02 1.39 16 36 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 37 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 38 H 0.41 16.41 7.17 -92.71 -0.66 15.74 16 39 H 0.10 2.63 7.92 -2.39 -0.02 2.61 16 40 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 42 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -61.79 369.69 3.47 -58.32 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.33 Total: 28.96 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.45 Total: 12.84 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.40 Total: -104.90 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.56 Total: -36.40 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.72 Total: 42.30 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -61.79 3.47 -58.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275598798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.486 kcal (2) G-P(sol) polarization free energy of solvation -61.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds