Wall clock time and date at job start Tue Mar 31 2020 20:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.87472 * 2 1 4 4 C 1.54322 * 109.88548 * 121.17871 * 2 1 3 5 5 C 1.55157 * 102.94433 * 141.60843 * 4 2 1 6 6 H 1.09004 * 111.00311 * 82.57245 * 5 4 2 7 7 N 1.46896 * 111.00450 * 206.42110 * 5 4 2 8 8 C 1.46901 * 111.00030 * 204.99887 * 7 5 4 9 9 C 1.50703 * 109.47149 * 180.02562 * 8 7 5 10 10 O 1.21290 * 119.99819 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99773 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99963 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99921 * 359.97438 * 12 11 9 14 14 C 1.38950 * 120.00202 * 179.97438 * 12 11 9 15 15 N 1.31407 * 119.99818 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99816 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47543 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47357 * 119.99809 * 16 14 12 19 19 H 1.48509 * 109.46902 * 239.99560 * 16 14 12 20 20 C 1.55124 * 101.48746 * 324.33699 * 5 4 2 21 21 N 1.47028 * 109.88164 * 238.98680 * 2 1 3 22 22 C 1.34777 * 125.64541 * 61.60664 * 21 2 1 23 23 O 1.21633 * 120.00239 * 359.97438 * 22 21 2 24 24 C 1.47265 * 119.99770 * 179.72498 * 22 21 2 25 25 C 1.35201 * 123.14373 * 180.27392 * 24 22 21 26 26 S 1.70944 * 108.83030 * 179.97438 * 25 24 22 27 27 C 1.70768 * 91.12749 * 359.97438 * 26 25 24 28 28 N 1.28654 * 110.56061 * 359.72846 * 27 26 25 29 29 H 1.09007 * 109.47083 * 179.55879 * 1 2 3 30 30 H 1.09001 * 109.47240 * 299.55747 * 1 2 3 31 31 H 1.08995 * 109.47663 * 59.55849 * 1 2 3 32 32 H 1.09001 * 110.71938 * 259.97617 * 4 2 1 33 33 H 1.09004 * 110.71942 * 23.06762 * 4 2 1 34 34 H 1.00900 * 111.00117 * 328.95649 * 7 5 4 35 35 H 1.08999 * 109.47044 * 300.00582 * 8 7 5 36 36 H 1.08997 * 109.46918 * 60.00262 * 8 7 5 37 37 H 0.97003 * 120.00414 * 359.97438 * 11 9 8 38 38 H 0.97002 * 119.99800 * 180.02562 * 15 14 12 39 39 H 1.09007 * 110.49220 * 278.45328 * 20 5 4 40 40 H 1.09000 * 110.34724 * 156.05585 * 20 5 4 41 41 H 1.08004 * 125.58225 * 359.97438 * 25 24 22 42 42 H 1.08000 * 124.72150 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 1.2416 5 6 3.2876 -1.5152 0.6901 6 1 4.1654 -0.8698 0.6590 7 7 3.5539 -2.7249 1.4798 8 6 4.9667 -3.1158 1.3838 9 6 5.2011 -4.3580 2.2043 10 8 4.2818 -4.8672 2.8098 11 7 6.4325 -4.9024 2.2660 12 6 6.6456 -6.0328 3.0120 13 1 5.8269 -6.4867 3.5505 14 6 7.9150 -6.5944 3.0752 15 7 8.9111 -6.0423 2.4196 16 14 8.2055 -8.1341 4.0922 17 1 6.9315 -8.5546 4.7287 18 1 8.7024 -9.2221 3.2123 19 1 9.2137 -7.8492 5.1447 20 6 2.8100 -1.8814 -0.7396 21 7 2.0300 -0.7124 -1.1850 22 6 1.8073 -0.3584 -2.4663 23 8 1.1408 0.6274 -2.7179 24 6 2.3755 -1.1623 -3.5616 25 6 2.1971 -0.8627 -4.8678 26 16 3.0100 -2.0289 -5.8173 27 6 3.5415 -2.8482 -4.4165 28 7 3.1213 -2.2513 -3.3571 29 1 -0.3634 -1.0277 -0.0079 30 1 -0.3634 0.5069 0.8939 31 1 -0.3634 0.5206 -0.8859 32 1 2.3529 -0.0489 2.0200 33 1 1.3040 -1.4460 1.6180 34 1 3.2788 -2.5964 2.4421 35 1 5.2184 -3.3158 0.3423 36 1 5.5937 -2.3076 1.7604 37 1 7.1678 -4.4949 1.7821 38 1 9.7971 -6.4346 2.4634 39 1 2.1801 -2.7708 -0.7155 40 1 3.6655 -2.0391 -1.3963 41 1 1.6334 -0.0240 -5.2489 42 1 4.1500 -3.7404 -4.4194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278354983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:17 Heat of formation + Delta-G solvation = -34.668952 kcal Electronic energy + Delta-G solvation = -26489.933178 eV Core-core repulsion = 22596.158472 eV Total energy + Delta-G solvation = -3893.774706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79942 -40.35209 -39.94808 -38.72065 -36.25284 -35.59064 -33.25140 -33.00901 -31.53994 -31.15280 -27.98196 -27.02510 -26.83677 -25.76452 -24.16233 -21.94639 -21.78020 -21.03327 -20.29717 -19.88676 -19.29915 -17.93886 -17.81836 -17.16774 -16.86747 -16.69261 -16.40449 -16.19049 -15.88716 -15.59230 -15.23464 -14.99286 -14.79443 -14.49092 -14.38974 -14.29965 -13.91894 -13.71830 -13.50004 -13.38798 -13.18858 -12.97933 -12.86187 -12.77127 -12.38374 -12.12900 -12.10067 -12.00795 -11.74941 -11.49245 -11.22901 -10.72932 -10.64113 -10.31698 -10.06046 -9.99086 -9.68427 -9.37022 -8.44757 -5.93074 -0.47692 0.33431 0.63399 0.92081 1.38090 1.43653 1.57552 1.88965 2.07719 2.24536 2.30967 2.85915 3.10502 3.22917 3.37797 3.58828 3.65735 3.91537 4.00796 4.14709 4.17667 4.32588 4.33612 4.34690 4.37059 4.51411 4.60300 4.69273 4.72089 4.81031 4.90560 4.97300 5.05898 5.11955 5.24601 5.41517 5.43613 5.90462 6.10834 6.31383 6.40417 6.44822 6.62305 6.99449 7.15092 7.58814 8.14000 8.72869 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.002590 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.118794 B =10809.303190 C =12671.252370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.133 3.867 3 H 0.081 0.919 4 C -0.122 4.122 5 C 0.074 3.926 6 H 0.072 0.928 7 N -0.665 5.665 8 C 0.066 3.934 9 C 0.440 3.560 10 O -0.622 6.622 11 N -0.573 5.573 12 C -0.331 4.331 13 H 0.079 0.921 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.991 3.009 17 H -0.274 1.274 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.122 3.878 21 N -0.597 5.597 22 C 0.600 3.400 23 O -0.569 6.569 24 C -0.022 4.022 25 C -0.236 4.236 26 S 0.299 5.701 27 C -0.012 4.012 28 N -0.466 5.466 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.353 0.647 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.193 0.807 42 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 12.409 -16.249 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.099 0.901 4 C -0.160 4.160 5 C -0.037 4.037 6 H 0.090 0.910 7 N -0.299 5.299 8 C -0.066 4.066 9 C 0.228 3.772 10 O -0.508 6.508 11 N -0.211 5.211 12 C -0.461 4.461 13 H 0.097 0.903 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.815 3.185 17 H -0.198 1.198 18 H -0.196 1.196 19 H -0.197 1.197 20 C -0.002 4.002 21 N -0.329 5.329 22 C 0.388 3.612 23 O -0.450 6.450 24 C -0.157 4.157 25 C -0.379 4.379 26 S 0.555 5.445 27 C -0.310 4.310 28 N -0.181 5.181 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.173 0.827 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.211 0.789 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.230 11.720 -17.052 23.082 hybrid contribution 0.648 0.486 1.570 1.767 sum -9.582 12.207 -15.482 21.920 Atomic orbital electron populations 1.22075 0.94131 1.02075 1.03029 1.21711 0.95215 0.96358 0.83702 0.90091 1.22932 0.97092 0.99527 0.96410 1.22750 0.97839 0.89733 0.93330 0.90994 1.59873 1.18269 1.34417 1.17333 1.21595 0.90263 0.94177 1.00597 1.20812 0.82646 0.88204 0.85543 1.90497 1.43618 1.66105 1.50613 1.41929 1.09221 1.25400 1.44508 1.19691 0.95676 1.04217 1.26521 0.90347 1.26007 0.94465 1.02093 0.98647 1.69675 1.01659 1.41986 1.42801 0.84895 0.78164 0.77477 0.77960 1.19816 1.19644 1.19671 1.22510 0.96113 0.86772 0.94756 1.48382 1.51348 1.28545 1.04604 1.17050 0.79622 0.83294 0.81261 1.90755 1.42074 1.28316 1.83828 1.20326 1.04750 0.97147 0.93525 1.26898 1.06628 1.07551 0.96857 1.82642 1.39052 1.13485 1.09362 1.29137 1.04702 1.05902 0.91262 1.67152 1.11203 1.07082 1.32678 0.93001 0.89293 0.93131 0.87612 0.89346 0.82662 0.88045 0.91282 0.76976 0.91341 0.92067 0.88475 0.78931 0.75242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.10 71.98 0.66 -2.59 16 2 C 0.13 2.89 3.46 45.34 0.16 3.05 16 3 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.12 -2.35 5.88 31.78 0.19 -2.17 16 5 C 0.07 1.75 3.39 46.38 0.16 1.91 16 6 H 0.07 1.58 7.83 -2.39 -0.02 1.57 16 7 N -0.67 -20.01 6.03 -488.02 -2.94 -22.96 16 8 C 0.07 2.19 6.03 85.56 0.52 2.70 16 9 C 0.44 20.48 7.82 87.66 0.69 21.17 16 10 O -0.62 -33.85 15.78 -3.06 -0.05 -33.90 16 11 N -0.57 -28.93 5.29 -306.98 -1.62 -30.55 16 12 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 13 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 14 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 15 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 16 Si 0.99 42.50 29.55 68.60 2.03 44.52 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 C 0.12 3.16 5.76 86.93 0.50 3.66 16 21 N -0.60 -15.42 3.06 -791.62 -2.43 -17.85 16 22 C 0.60 17.01 7.62 86.62 0.66 17.67 16 23 O -0.57 -18.33 15.75 -4.14 -0.07 -18.39 16 24 C -0.02 -0.54 6.61 40.55 0.27 -0.27 16 25 C -0.24 -4.23 10.62 67.12 0.71 -3.51 16 26 S 0.30 3.12 22.97 -56.49 -1.30 1.82 16 27 C -0.01 -0.17 12.17 130.71 1.59 1.42 16 28 N -0.47 -10.51 7.32 -193.03 -1.41 -11.92 16 29 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.25 6.88 -2.39 -0.02 1.23 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 1.80 7.85 -2.39 -0.02 1.78 16 34 H 0.35 10.82 8.14 -89.69 -0.73 10.09 16 35 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.07 1.98 8.09 -2.39 -0.02 1.96 16 37 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 38 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 39 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.10 2.60 5.98 -2.39 -0.01 2.59 16 41 H 0.19 3.09 8.03 -2.91 -0.02 3.07 16 42 H 0.23 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -73.56 366.84 -0.52 -74.08 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -0.38 Total: 38.85 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 7.37 Total: 25.05 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -8.12 Total: -132.02 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.11 Total: -52.29 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.30 Total: 1.82 kcal Total: -73.56 -0.52 -74.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278354983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.407 kcal (2) G-P(sol) polarization free energy of solvation -73.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds