Wall clock time and date at job start Tue Mar 31 2020 20:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.87205 * 2 1 4 4 C 1.54316 * 109.88199 * 238.98087 * 2 1 3 5 5 C 1.55154 * 102.94149 * 218.38969 * 4 2 1 6 6 H 1.08999 * 111.00567 * 277.39252 * 5 4 2 7 7 N 1.46901 * 111.00247 * 153.57886 * 5 4 2 8 8 C 1.46902 * 110.99844 * 154.99916 * 7 5 4 9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00004 * 180.02562 * 9 8 7 12 12 C 1.37092 * 119.99804 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00499 * 0.02562 * 12 11 9 14 14 C 1.38956 * 119.99671 * 179.72159 * 12 11 9 15 15 N 1.31414 * 120.00152 * 0.27554 * 14 12 11 16 16 Si 1.86803 * 119.99914 * 180.27723 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00084 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00035 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99834 * 16 14 12 20 20 C 1.54903 * 101.58213 * 35.50690 * 5 4 2 21 21 N 1.47021 * 109.87831 * 121.17361 * 2 1 3 22 22 C 1.34776 * 125.65219 * 298.33794 * 21 2 1 23 23 O 1.21578 * 119.99729 * 359.97438 * 22 21 2 24 24 C 1.47688 * 120.00211 * 180.02562 * 22 21 2 25 25 C 1.39489 * 122.10192 * 179.73766 * 24 22 21 26 26 C 1.35006 * 111.68231 * 179.77563 * 25 24 22 27 27 S 1.71758 * 105.44904 * 0.43291 * 26 25 24 28 28 N 1.30600 * 122.10552 * 0.02562 * 24 22 21 29 29 H 1.08996 * 109.46920 * 181.01553 * 1 2 3 30 30 H 1.09000 * 109.47121 * 301.01925 * 1 2 3 31 31 H 1.09002 * 109.47062 * 61.02111 * 1 2 3 32 32 H 1.09005 * 110.71966 * 100.02907 * 4 2 1 33 33 H 1.08998 * 110.87540 * 336.82563 * 4 2 1 34 34 H 1.00895 * 111.00207 * 278.95259 * 7 5 4 35 35 H 1.09004 * 109.47131 * 60.00016 * 8 7 5 36 36 H 1.08994 * 109.47471 * 299.99766 * 8 7 5 37 37 H 0.97000 * 119.99715 * 359.97438 * 11 9 8 38 38 H 0.96991 * 119.99827 * 179.97438 * 15 14 12 39 39 H 1.08996 * 110.37230 * 81.82701 * 20 5 4 40 40 H 1.09008 * 110.36655 * 204.15473 * 20 5 4 41 41 H 1.07998 * 124.16106 * 359.97438 * 25 24 22 42 42 H 1.07997 * 127.27201 * 180.16683 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 3.2876 -1.5133 -0.6943 6 1 4.1656 -0.8681 -0.6620 7 7 3.5539 -2.7208 -1.4874 8 6 4.9667 -3.1119 -1.3926 9 6 5.2010 -4.3518 -2.2165 10 8 4.2817 -4.8595 -2.8234 11 7 6.4322 -4.8967 -2.2790 12 6 6.6455 -6.0243 -3.0289 13 1 5.8271 -6.4759 -3.5700 14 6 7.9160 -6.5827 -3.0980 15 7 8.9120 -6.0331 -2.4401 16 14 8.2083 -8.1148 -4.1261 17 1 8.5774 -7.7198 -5.5092 18 1 9.3105 -8.9097 -3.5275 19 1 6.9692 -8.9327 -4.1588 20 6 2.8145 -1.8804 0.7342 21 7 2.0300 -0.7157 1.1830 22 6 1.8082 -0.3649 2.4652 23 8 1.1437 0.6210 2.7195 24 6 2.3733 -1.1773 3.5615 25 6 2.1759 -0.8516 4.9033 26 6 2.7793 -1.7364 5.7254 27 16 3.5405 -2.8766 4.6908 28 7 3.0939 -2.2428 3.3354 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5296 0.8807 31 1 -0.3633 0.4979 -0.8990 32 1 2.3530 -0.0432 -2.0201 33 1 1.3065 -1.4436 -1.6230 34 1 2.9494 -3.4783 -1.2068 35 1 5.2184 -3.3149 -0.3516 36 1 5.5937 -2.3027 -1.7669 37 1 7.1675 -4.4905 -1.7939 38 1 9.7988 -6.4231 -2.4881 39 1 2.1886 -2.7724 0.7091 40 1 3.6716 -2.0357 1.3896 41 1 1.6074 0.0015 5.2430 42 1 2.7859 -1.7265 6.8053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278383459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:52 Heat of formation + Delta-G solvation = -11.561931 kcal Electronic energy + Delta-G solvation = -26499.973736 eV Core-core repulsion = 22607.201026 eV Total energy + Delta-G solvation = -3892.772710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95258 -39.27758 -38.29141 -37.55605 -34.84625 -33.80646 -32.56652 -31.37127 -31.25451 -30.00845 -26.95831 -26.35454 -25.71828 -24.03028 -22.87401 -21.24788 -20.67740 -19.43715 -19.29328 -18.74180 -17.92239 -17.38881 -16.80298 -16.20397 -15.66257 -15.28946 -15.01912 -14.53105 -14.45876 -14.31603 -14.04974 -13.76164 -13.67066 -13.61863 -13.48220 -12.94715 -12.67375 -12.51619 -12.29534 -12.15477 -11.85255 -11.60577 -11.54602 -11.50432 -11.11854 -11.02984 -10.91115 -10.76657 -10.40348 -10.22952 -10.22882 -10.13856 -9.52213 -9.21499 -8.81676 -8.48744 -8.10482 -7.97368 -6.42938 -3.83713 0.25535 1.11826 1.45015 1.48259 2.69578 2.98272 3.17116 3.25885 3.31605 3.88560 3.97091 4.17682 4.31284 4.45882 4.56158 4.66333 4.88912 4.95463 5.03166 5.13508 5.16795 5.17914 5.24880 5.27221 5.43481 5.48173 5.62770 5.67519 5.78656 5.83351 5.88315 5.92461 5.96598 6.03810 6.13599 6.26118 6.28578 7.14357 7.24511 7.54175 7.57325 7.86012 8.04854 8.59755 9.16640 9.52807 10.04087 10.74780 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002651 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.561356 B =10560.429865 C =12342.661434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.079 0.921 4 C -0.117 4.117 5 C 0.075 3.925 6 H 0.092 0.908 7 N -0.651 5.651 8 C 0.049 3.951 9 C 0.441 3.559 10 O -0.583 6.583 11 N -0.563 5.563 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.074 3.926 21 N -0.592 5.592 22 C 0.605 3.395 23 O -0.533 6.533 24 C 0.049 3.951 25 C -0.135 4.135 26 C -0.285 4.285 27 S 0.470 5.530 28 N -0.511 5.511 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.353 0.647 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.171 0.829 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.656 11.405 16.338 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.037 4.037 6 H 0.110 0.890 7 N -0.282 5.282 8 C -0.084 4.084 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.200 5.200 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.052 4.052 21 N -0.325 5.325 22 C 0.389 3.611 23 O -0.409 6.409 24 C -0.125 4.125 25 C -0.167 4.167 26 C -0.434 4.434 27 S 0.626 5.374 28 N -0.347 5.347 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.173 0.827 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.188 0.812 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.230 10.204 14.818 20.696 hybrid contribution -0.238 0.657 1.259 1.440 sum -10.468 10.861 16.077 22.045 Atomic orbital electron populations 1.22138 0.94476 1.02474 1.02907 1.21705 0.94878 0.96417 0.83901 0.90273 1.22765 0.97722 0.99387 0.95633 1.22850 0.98173 0.93583 0.89141 0.88982 1.60150 1.04882 1.07029 1.56150 1.21752 0.90061 0.98085 0.98491 1.19778 0.84124 0.86834 0.86652 1.90528 1.42758 1.64492 1.48959 1.41859 1.08369 1.25655 1.44080 1.19704 0.95628 1.02729 1.24818 0.87913 1.25262 0.95108 0.99597 0.97946 1.69610 1.01278 1.41173 1.42240 0.85862 0.78116 0.80890 0.79449 1.20385 1.20943 1.19408 1.23468 0.96393 0.88139 0.97206 1.48261 1.51369 1.28430 1.04421 1.16865 0.80144 0.83536 0.80570 1.90788 1.40303 1.26809 1.82997 1.21112 1.01629 0.94835 0.94914 1.21375 1.02669 1.02472 0.90217 1.27236 1.06312 1.02753 1.07068 1.80834 1.42401 1.26141 0.88045 1.72627 1.18789 1.14826 1.28410 0.92413 0.91362 0.91350 0.89484 0.89574 0.82682 0.93648 0.89450 0.77460 0.91868 0.91101 0.88317 0.81160 0.79617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.10 37.16 0.34 -1.32 16 2 C 0.13 1.45 3.46 -66.96 -0.23 1.22 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.12 -1.24 6.17 -24.90 -0.15 -1.39 16 5 C 0.07 0.90 3.38 -65.57 -0.22 0.68 16 6 H 0.09 1.08 7.83 -51.93 -0.41 0.68 16 7 N -0.65 -10.00 6.04 -105.73 -0.64 -10.64 16 8 C 0.05 0.83 6.03 -4.97 -0.03 0.80 16 9 C 0.44 10.20 7.82 -10.98 -0.09 10.11 16 10 O -0.58 -15.59 15.78 5.55 0.09 -15.51 16 11 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 12 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 13 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 14 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 15 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 16 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.07 0.88 5.62 -2.53 -0.01 0.87 16 21 N -0.59 -7.22 3.06 -164.18 -0.50 -7.72 16 22 C 0.60 8.03 7.63 -12.40 -0.09 7.93 16 23 O -0.53 -8.04 15.71 5.30 0.08 -7.96 16 24 C 0.05 0.57 6.61 -84.06 -0.56 0.02 16 25 C -0.13 -1.25 9.98 -40.26 -0.40 -1.65 16 26 C -0.28 -1.94 11.41 29.58 0.34 -1.61 16 27 S 0.47 3.68 23.20 -107.50 -2.49 1.19 16 28 N -0.51 -5.69 7.89 24.84 0.20 -5.50 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.95 7.86 -51.93 -0.41 0.55 16 34 H 0.35 5.65 7.89 -39.29 -0.31 5.34 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 37 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.07 0.89 7.75 -51.93 -0.40 0.48 16 40 H 0.10 1.24 6.01 -51.92 -0.31 0.92 16 41 H 0.17 1.43 7.99 -52.49 -0.42 1.01 16 42 H 0.19 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -32.77 365.72 -8.87 -41.64 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.41 Total: 13.08 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -1.35 Total: 7.74 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.28 Total: -61.56 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -2.49 Total: 1.19 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.77 -8.87 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278383459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.079 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds