Wall clock time and date at job start Tue Mar 31 2020 20:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.87205 * 2 1 4 4 C 1.54316 * 109.88199 * 238.98087 * 2 1 3 5 5 C 1.55154 * 102.94149 * 218.38969 * 4 2 1 6 6 H 1.08999 * 111.00567 * 277.39252 * 5 4 2 7 7 N 1.46901 * 111.00247 * 153.57886 * 5 4 2 8 8 C 1.46902 * 110.99844 * 154.99916 * 7 5 4 9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00004 * 180.02562 * 9 8 7 12 12 C 1.37092 * 119.99804 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00499 * 0.02562 * 12 11 9 14 14 C 1.38956 * 119.99671 * 179.72159 * 12 11 9 15 15 N 1.31414 * 120.00152 * 0.27554 * 14 12 11 16 16 Si 1.86803 * 119.99914 * 180.27723 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00084 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00035 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99834 * 16 14 12 20 20 C 1.54903 * 101.58213 * 35.50690 * 5 4 2 21 21 N 1.47021 * 109.87831 * 121.17361 * 2 1 3 22 22 C 1.34776 * 125.65219 * 298.33794 * 21 2 1 23 23 O 1.21578 * 119.99729 * 359.97438 * 22 21 2 24 24 C 1.47688 * 120.00211 * 180.02562 * 22 21 2 25 25 C 1.39489 * 122.10192 * 179.73766 * 24 22 21 26 26 C 1.35006 * 111.68231 * 179.77563 * 25 24 22 27 27 S 1.71758 * 105.44904 * 0.43291 * 26 25 24 28 28 N 1.30600 * 122.10552 * 0.02562 * 24 22 21 29 29 H 1.08996 * 109.46920 * 181.01553 * 1 2 3 30 30 H 1.09000 * 109.47121 * 301.01925 * 1 2 3 31 31 H 1.09002 * 109.47062 * 61.02111 * 1 2 3 32 32 H 1.09005 * 110.71966 * 100.02907 * 4 2 1 33 33 H 1.08998 * 110.87540 * 336.82563 * 4 2 1 34 34 H 1.00895 * 111.00207 * 278.95259 * 7 5 4 35 35 H 1.09004 * 109.47131 * 60.00016 * 8 7 5 36 36 H 1.08994 * 109.47471 * 299.99766 * 8 7 5 37 37 H 0.97000 * 119.99715 * 359.97438 * 11 9 8 38 38 H 0.96991 * 119.99827 * 179.97438 * 15 14 12 39 39 H 1.08996 * 110.37230 * 81.82701 * 20 5 4 40 40 H 1.09008 * 110.36655 * 204.15473 * 20 5 4 41 41 H 1.07998 * 124.16106 * 359.97438 * 25 24 22 42 42 H 1.07997 * 127.27201 * 180.16683 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 3.2876 -1.5133 -0.6943 6 1 4.1656 -0.8681 -0.6620 7 7 3.5539 -2.7208 -1.4874 8 6 4.9667 -3.1119 -1.3926 9 6 5.2010 -4.3518 -2.2165 10 8 4.2817 -4.8595 -2.8234 11 7 6.4322 -4.8967 -2.2790 12 6 6.6455 -6.0243 -3.0289 13 1 5.8271 -6.4759 -3.5700 14 6 7.9160 -6.5827 -3.0980 15 7 8.9120 -6.0331 -2.4401 16 14 8.2083 -8.1148 -4.1261 17 1 8.5774 -7.7198 -5.5092 18 1 9.3105 -8.9097 -3.5275 19 1 6.9692 -8.9327 -4.1588 20 6 2.8145 -1.8804 0.7342 21 7 2.0300 -0.7157 1.1830 22 6 1.8082 -0.3649 2.4652 23 8 1.1437 0.6210 2.7195 24 6 2.3733 -1.1773 3.5615 25 6 2.1759 -0.8516 4.9033 26 6 2.7793 -1.7364 5.7254 27 16 3.5405 -2.8766 4.6908 28 7 3.0939 -2.2428 3.3354 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5296 0.8807 31 1 -0.3633 0.4979 -0.8990 32 1 2.3530 -0.0432 -2.0201 33 1 1.3065 -1.4436 -1.6230 34 1 2.9494 -3.4783 -1.2068 35 1 5.2184 -3.3149 -0.3516 36 1 5.5937 -2.3027 -1.7669 37 1 7.1675 -4.4905 -1.7939 38 1 9.7988 -6.4231 -2.4881 39 1 2.1886 -2.7724 0.7091 40 1 3.6716 -2.0357 1.3896 41 1 1.6074 0.0015 5.2430 42 1 2.7859 -1.7265 6.8053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278383459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:51 Heat of formation + Delta-G solvation = -35.690042 kcal Electronic energy + Delta-G solvation = -26501.020009 eV Core-core repulsion = 22607.201026 eV Total energy + Delta-G solvation = -3893.818983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83743 -40.31873 -39.84292 -38.65303 -36.26526 -35.61099 -33.37848 -33.24752 -32.15211 -31.16650 -28.03564 -27.64823 -26.71749 -25.70112 -23.72351 -22.20146 -21.53396 -21.06255 -20.30620 -19.91469 -19.45191 -18.22525 -17.88168 -17.71679 -16.85881 -16.53577 -16.33766 -16.13238 -15.76388 -15.33311 -15.17145 -14.97094 -14.94743 -14.39553 -14.27680 -14.16861 -14.07337 -13.60349 -13.47861 -13.40111 -13.26360 -12.96328 -12.82763 -12.66510 -12.40466 -12.19853 -12.11639 -12.02043 -11.80298 -11.68388 -11.49513 -11.06334 -10.88145 -10.33455 -10.00326 -9.99440 -9.68819 -9.35576 -8.45437 -5.93906 -0.45786 0.50569 0.69653 0.78527 1.39042 1.43125 1.55492 1.79831 2.06398 2.07299 2.30130 2.84380 3.21984 3.33876 3.41659 3.69691 3.75646 3.80788 3.97555 4.10661 4.21522 4.32708 4.37934 4.39792 4.47100 4.53050 4.57814 4.65187 4.73377 4.78686 4.83069 4.93759 5.02458 5.08742 5.19681 5.28597 5.42569 5.43403 5.87941 6.08357 6.26043 6.33976 6.61248 6.89977 7.14016 7.57540 8.12719 8.71931 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002651 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.561356 B =10560.429865 C =12342.661434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.083 0.917 4 C -0.107 4.107 5 C 0.079 3.921 6 H 0.102 0.898 7 N -0.659 5.659 8 C 0.064 3.936 9 C 0.439 3.561 10 O -0.623 6.623 11 N -0.572 5.572 12 C -0.333 4.333 13 H 0.079 0.921 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.991 3.009 17 H -0.272 1.272 18 H -0.271 1.271 19 H -0.273 1.273 20 C 0.084 3.916 21 N -0.593 5.593 22 C 0.598 3.402 23 O -0.560 6.560 24 C 0.027 3.973 25 C -0.153 4.153 26 C -0.261 4.261 27 S 0.510 5.490 28 N -0.545 5.545 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.347 0.653 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.174 0.826 42 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.020 11.484 17.399 23.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 H 0.101 0.899 4 C -0.146 4.146 5 C -0.033 4.033 6 H 0.120 0.880 7 N -0.290 5.290 8 C -0.069 4.069 9 C 0.226 3.774 10 O -0.509 6.509 11 N -0.210 5.210 12 C -0.463 4.463 13 H 0.097 0.903 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.815 3.185 17 H -0.197 1.197 18 H -0.195 1.195 19 H -0.197 1.197 20 C -0.042 4.042 21 N -0.325 5.325 22 C 0.383 3.617 23 O -0.439 6.439 24 C -0.146 4.146 25 C -0.185 4.185 26 C -0.410 4.410 27 S 0.666 5.334 28 N -0.381 5.381 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.167 0.833 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.191 0.809 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -9.585 10.311 15.887 21.227 hybrid contribution -0.446 0.613 1.016 1.268 sum -10.031 10.924 16.903 22.487 Atomic orbital electron populations 1.22073 0.94069 1.02092 1.03062 1.21802 0.95227 0.96516 0.83550 0.89931 1.22714 0.96831 0.99293 0.95740 1.22870 0.99184 0.92341 0.88885 0.88013 1.60160 1.03755 1.07750 1.57365 1.21612 0.91545 0.95385 0.98311 1.20824 0.82853 0.87780 0.85902 1.90499 1.43797 1.66043 1.50569 1.41921 1.09268 1.25480 1.44303 1.19659 0.95692 1.04472 1.26437 0.90326 1.26014 0.94434 1.02085 0.98637 1.69667 1.01619 1.42157 1.42635 0.84954 0.78000 0.77438 0.78115 1.19750 1.19550 1.19737 1.23311 0.96124 0.87803 0.96954 1.48336 1.51161 1.28407 1.04632 1.17223 0.79832 0.83465 0.81184 1.90756 1.41609 1.28051 1.83486 1.21091 1.02886 0.95394 0.95237 1.21467 1.03816 1.03502 0.89739 1.27617 1.03973 1.00874 1.08527 1.80643 1.40919 1.25054 0.86798 1.72389 1.19523 1.15166 1.31069 0.92946 0.93025 0.89382 0.88068 0.89945 0.83289 0.91504 0.87491 0.76958 0.91310 0.91866 0.88578 0.80876 0.76058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.10 71.98 0.65 -2.46 16 2 C 0.13 2.76 3.46 45.34 0.16 2.92 16 3 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.11 -2.14 6.17 31.78 0.20 -1.95 16 5 C 0.08 1.80 3.38 46.30 0.16 1.95 16 6 H 0.10 2.17 7.83 -2.39 -0.02 2.16 16 7 N -0.66 -19.62 6.04 -488.41 -2.95 -22.57 16 8 C 0.06 2.09 6.03 85.56 0.52 2.60 16 9 C 0.44 20.38 7.82 87.66 0.69 21.06 16 10 O -0.62 -33.88 15.78 -3.07 -0.05 -33.93 16 11 N -0.57 -28.86 5.29 -306.97 -1.62 -30.49 16 12 C -0.33 -18.71 9.68 84.04 0.81 -17.89 16 13 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 14 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 15 N -0.92 -49.02 13.05 21.67 0.28 -48.74 16 16 Si 0.99 42.49 29.55 68.60 2.03 44.51 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C 0.08 1.95 5.62 86.85 0.49 2.44 16 21 N -0.59 -14.34 3.06 -791.61 -2.43 -16.77 16 22 C 0.60 16.02 7.63 86.74 0.66 16.69 16 23 O -0.56 -17.28 15.71 -3.96 -0.06 -17.34 16 24 C 0.03 0.61 6.61 42.13 0.28 0.89 16 25 C -0.15 -2.68 9.98 21.83 0.22 -2.47 16 26 C -0.26 -2.90 11.41 67.08 0.77 -2.13 16 27 S 0.51 7.03 23.20 -56.49 -1.31 5.72 16 28 N -0.54 -11.71 7.89 -75.32 -0.59 -12.31 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.22 6.90 -2.39 -0.02 1.21 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.08 1.74 7.86 -2.39 -0.02 1.72 16 34 H 0.35 11.04 7.89 -89.70 -0.71 10.33 16 35 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.11 3.13 8.09 -2.39 -0.02 3.11 16 37 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 38 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 39 H 0.06 1.58 7.75 -2.39 -0.02 1.56 16 40 H 0.10 2.34 6.01 -2.38 -0.01 2.32 16 41 H 0.17 2.83 7.99 -2.91 -0.02 2.81 16 42 H 0.22 0.73 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -71.68 365.72 -1.01 -72.68 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.36 Total: 37.73 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 6.06 Total: 21.50 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -7.31 Total: -130.87 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -0.11 Total: -51.27 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 7.03 SS G_CDS: -1.31 Total: 5.72 kcal Total: -71.68 -1.01 -72.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278383459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.994 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds