Wall clock time and date at job start Tue Mar 31 2020 20:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 109.99968 * 2 1 4 4 C 1.54338 * 109.99033 * 238.96167 * 2 1 3 5 5 C 1.55155 * 103.02183 * 218.67033 * 4 2 1 6 6 H 1.09007 * 110.99783 * 277.23011 * 5 4 2 7 7 N 1.46902 * 111.03667 * 153.39988 * 5 4 2 8 8 C 1.46898 * 111.00078 * 161.32865 * 7 5 4 9 9 C 1.50691 * 109.47169 * 179.97438 * 8 7 5 10 10 O 1.21289 * 120.00117 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00014 * 180.02562 * 9 8 7 12 12 C 1.37099 * 119.99947 * 180.02562 * 11 9 8 13 13 H 1.07994 * 120.00231 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99829 * 180.02562 * 12 11 9 15 15 N 1.31410 * 120.00397 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99990 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47074 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47511 * 119.99716 * 16 14 12 19 19 H 1.48512 * 109.46915 * 239.99902 * 16 14 12 20 20 C 1.54905 * 101.58333 * 35.30738 * 5 4 2 21 21 N 1.47020 * 109.87927 * 121.10102 * 2 1 3 22 22 C 1.34775 * 125.64637 * 298.39027 * 21 2 1 23 23 O 1.21614 * 120.00083 * 3.18393 * 22 21 2 24 24 C 1.47259 * 119.99651 * 183.18819 * 22 21 2 25 25 N 1.30566 * 125.53900 * 173.25191 * 24 22 21 26 26 C 1.30695 * 115.90385 * 179.97438 * 25 24 22 27 27 C 1.34233 * 115.78708 * 359.97438 * 26 25 24 28 28 S 1.71066 * 109.09173 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47400 * 300.35684 * 1 2 3 30 30 H 1.09008 * 109.47379 * 60.35504 * 1 2 3 31 31 H 1.08999 * 109.47923 * 180.35533 * 1 2 3 32 32 H 1.09002 * 110.84936 * 100.19648 * 4 2 1 33 33 H 1.09005 * 110.51510 * 336.98466 * 4 2 1 34 34 H 1.00900 * 111.00451 * 37.37294 * 7 5 4 35 35 H 1.09004 * 109.47467 * 299.99913 * 8 7 5 36 36 H 1.09002 * 109.46997 * 59.99331 * 8 7 5 37 37 H 0.96996 * 119.99953 * 359.97438 * 11 9 8 38 38 H 0.96996 * 120.00758 * 180.02562 * 15 14 12 39 39 H 1.08995 * 110.36896 * 204.15499 * 20 5 4 40 40 H 1.08996 * 110.36754 * 81.82936 * 20 5 4 41 41 H 1.08000 * 122.10843 * 179.97438 * 26 25 24 42 42 H 1.08000 * 125.45296 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 6 3.2862 -1.5185 -0.6915 6 1 4.1669 -0.8770 -0.6580 7 7 3.5490 -2.7276 -1.4833 8 6 4.9195 -3.2104 -1.2680 9 6 5.1513 -4.4492 -2.0941 10 8 4.2624 -4.8867 -2.7938 11 7 6.3464 -5.0711 -2.0555 12 6 6.5575 -6.1979 -2.8075 13 1 5.7660 -6.5874 -3.4305 14 6 7.7894 -6.8393 -2.7672 15 7 8.7524 -6.3657 -2.0087 16 14 8.0772 -8.3742 -3.7924 17 1 6.8445 -8.6990 -4.5540 18 1 9.1958 -8.1345 -4.7391 19 1 8.4199 -9.5095 -2.8984 20 6 2.8098 -1.8827 0.7368 21 7 2.0299 -0.7142 1.1839 22 6 1.8072 -0.3622 2.4656 23 8 1.0938 0.5893 2.7198 24 6 2.4280 -1.1298 3.5584 25 7 2.3893 -0.8142 4.8247 26 6 3.0059 -1.6326 5.6361 27 6 3.5976 -2.6907 5.0599 28 16 3.3410 -2.6237 3.3699 29 1 -0.3634 0.5194 0.8868 30 1 -0.3634 0.5083 -0.8932 31 1 -0.3635 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0192 33 1 1.3051 -1.4406 -1.6198 34 1 3.3732 -2.5635 -2.4632 35 1 5.6281 -2.4372 -1.5652 36 1 5.0602 -3.4459 -0.2131 37 1 7.0574 -4.7211 -1.4962 38 1 9.6125 -6.8133 -1.9809 39 1 3.6653 -2.0414 1.3931 40 1 2.1800 -2.7719 0.7114 41 1 3.0373 -1.4678 6.7030 42 1 4.1470 -3.4614 5.5801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278410670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:39 Heat of formation + Delta-G solvation = -7.702985 kcal Electronic energy + Delta-G solvation = -26486.083045 eV Core-core repulsion = 22593.477672 eV Total energy + Delta-G solvation = -3892.605374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72589 -39.75122 -38.44498 -37.67864 -34.96351 -33.87625 -32.61875 -31.31709 -30.51134 -30.17610 -26.93409 -26.33014 -26.07857 -24.17060 -23.11470 -21.24614 -20.63724 -19.52440 -19.33010 -18.50227 -17.94986 -17.14956 -16.90052 -16.27626 -15.70482 -15.51300 -15.31994 -14.93236 -14.61974 -14.40223 -14.07077 -13.90253 -13.84298 -13.70539 -13.42591 -13.36702 -13.03412 -12.61982 -12.30903 -12.20738 -12.04571 -11.73189 -11.58371 -11.25409 -11.11903 -11.05339 -10.92681 -10.57905 -10.39278 -10.28611 -9.96025 -9.90306 -9.58657 -9.21651 -9.01575 -8.60595 -8.27475 -8.03581 -6.48356 -3.89338 -0.02463 0.90852 1.38834 2.08869 2.33047 2.96180 3.11644 3.23098 3.29825 3.68319 3.82212 4.03638 4.13611 4.22642 4.38256 4.60547 4.74900 4.84755 4.85304 4.97177 5.06530 5.10258 5.15024 5.20450 5.25667 5.38427 5.48704 5.57086 5.63100 5.70580 5.74184 5.81496 5.88516 5.98023 6.12438 6.17061 6.96914 7.01354 7.29780 7.43963 7.49361 7.76140 7.99235 8.53378 9.11209 9.46629 9.97300 10.69230 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.002750 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.839787 B =10179.419642 C =11915.174543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 H 0.082 0.918 4 C -0.129 4.129 5 C 0.079 3.921 6 H 0.065 0.935 7 N -0.655 5.655 8 C 0.047 3.953 9 C 0.440 3.560 10 O -0.582 6.582 11 N -0.562 5.562 12 C -0.299 4.299 13 H 0.104 0.896 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.929 3.071 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.094 3.906 21 N -0.607 5.607 22 C 0.613 3.387 23 O -0.502 6.502 24 C -0.015 4.015 25 N -0.401 5.401 26 C 0.023 3.977 27 C -0.282 4.282 28 S 0.217 5.783 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.359 0.641 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.177 0.823 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 11.131 9.748 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 H 0.100 0.900 4 C -0.168 4.168 5 C -0.033 4.033 6 H 0.082 0.918 7 N -0.289 5.289 8 C -0.085 4.085 9 C 0.225 3.775 10 O -0.466 6.466 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.122 0.878 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.031 4.031 21 N -0.342 5.342 22 C 0.397 3.603 23 O -0.376 6.376 24 C -0.290 4.290 25 N -0.117 5.117 26 C -0.133 4.133 27 C -0.422 4.422 28 S 0.472 5.528 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.180 0.820 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.194 0.806 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.955 10.739 9.287 17.340 hybrid contribution 1.559 -0.033 0.704 1.711 sum -8.395 10.706 9.991 16.880 Atomic orbital electron populations 1.22171 0.94045 1.02862 1.03215 1.21591 0.95173 0.96187 0.82974 0.90003 1.22957 0.97891 0.99523 0.96390 1.22553 0.97218 0.91042 0.92454 0.91756 1.59953 1.25171 1.29559 1.14262 1.21775 0.88996 0.96701 1.01060 1.19726 0.83979 0.86907 0.86880 1.90535 1.43492 1.67849 1.44767 1.41868 1.11640 1.25253 1.41120 1.19750 0.98775 1.02277 1.22097 0.87813 1.25264 0.95272 0.99625 0.97718 1.69610 1.04342 1.41027 1.39219 0.85810 0.78529 0.80772 0.79305 1.19172 1.20751 1.20721 1.22689 0.95486 0.89061 0.95838 1.48267 1.52646 1.28870 1.04462 1.16212 0.80932 0.83237 0.79919 1.90833 1.36789 1.27576 1.82432 1.27389 1.07084 0.99273 0.95278 1.66603 1.15929 1.28604 1.00580 1.21804 0.98522 0.91370 1.01645 1.27278 1.08053 1.05240 1.01647 1.84644 1.44876 1.21387 1.01873 0.90994 0.91260 0.92028 0.89385 0.88642 0.81969 0.93448 0.89587 0.77467 0.91872 0.90649 0.88525 0.80565 0.79932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.10 37.16 0.34 -1.18 16 2 C 0.14 1.35 3.48 -66.95 -0.23 1.12 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.07 5.96 -24.89 -0.15 -1.22 16 5 C 0.08 0.79 3.32 -65.57 -0.22 0.57 16 6 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 7 N -0.66 -8.69 6.00 -105.73 -0.63 -9.32 16 8 C 0.05 0.72 6.03 -4.98 -0.03 0.69 16 9 C 0.44 9.52 7.82 -10.99 -0.09 9.43 16 10 O -0.58 -14.71 15.78 5.55 0.09 -14.62 16 11 N -0.56 -13.37 5.29 -10.97 -0.06 -13.43 16 12 C -0.30 -7.98 9.68 -14.93 -0.14 -8.13 16 13 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -23.58 13.05 55.50 0.72 -22.86 16 16 Si 0.93 20.32 29.55 -169.99 -5.02 15.29 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.09 0.97 5.26 -2.53 -0.01 0.95 16 21 N -0.61 -6.69 3.06 -164.34 -0.50 -7.19 16 22 C 0.61 8.26 7.65 -12.59 -0.10 8.17 16 23 O -0.50 -8.21 16.00 5.27 0.08 -8.13 16 24 C -0.01 -0.19 7.37 -14.42 -0.11 -0.30 16 25 N -0.40 -5.33 10.60 -11.50 -0.12 -5.46 16 26 C 0.02 0.23 11.24 -19.45 -0.22 0.01 16 27 C -0.28 -2.43 11.09 29.32 0.33 -2.10 16 28 S 0.22 2.11 18.72 -107.50 -2.01 0.09 16 29 H 0.07 0.81 6.78 -51.93 -0.35 0.46 16 30 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.82 7.84 -51.93 -0.41 0.41 16 34 H 0.36 4.89 8.23 -39.29 -0.32 4.57 16 35 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.39 8.89 7.90 -40.82 -0.32 8.57 16 38 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 39 H 0.08 0.74 4.95 -28.78 -0.14 0.60 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -32.93 365.02 -7.96 -40.88 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.27 Total: 10.73 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -0.73 Total: 8.51 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.59 Total: -58.26 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.17 Total: -22.75 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.01 Total: 0.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.93 -7.96 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278410670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.182 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds