Wall clock time and date at job start Tue Mar 31 2020 20:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 109.99968 * 2 1 4 4 C 1.54338 * 109.99033 * 238.96167 * 2 1 3 5 5 C 1.55155 * 103.02183 * 218.67033 * 4 2 1 6 6 H 1.09007 * 110.99783 * 277.23011 * 5 4 2 7 7 N 1.46902 * 111.03667 * 153.39988 * 5 4 2 8 8 C 1.46898 * 111.00078 * 161.32865 * 7 5 4 9 9 C 1.50691 * 109.47169 * 179.97438 * 8 7 5 10 10 O 1.21289 * 120.00117 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00014 * 180.02562 * 9 8 7 12 12 C 1.37099 * 119.99947 * 180.02562 * 11 9 8 13 13 H 1.07994 * 120.00231 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99829 * 180.02562 * 12 11 9 15 15 N 1.31410 * 120.00397 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99990 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47074 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47511 * 119.99716 * 16 14 12 19 19 H 1.48512 * 109.46915 * 239.99902 * 16 14 12 20 20 C 1.54905 * 101.58333 * 35.30738 * 5 4 2 21 21 N 1.47020 * 109.87927 * 121.10102 * 2 1 3 22 22 C 1.34775 * 125.64637 * 298.39027 * 21 2 1 23 23 O 1.21614 * 120.00083 * 3.18393 * 22 21 2 24 24 C 1.47259 * 119.99651 * 183.18819 * 22 21 2 25 25 N 1.30566 * 125.53900 * 173.25191 * 24 22 21 26 26 C 1.30695 * 115.90385 * 179.97438 * 25 24 22 27 27 C 1.34233 * 115.78708 * 359.97438 * 26 25 24 28 28 S 1.71066 * 109.09173 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47400 * 300.35684 * 1 2 3 30 30 H 1.09008 * 109.47379 * 60.35504 * 1 2 3 31 31 H 1.08999 * 109.47923 * 180.35533 * 1 2 3 32 32 H 1.09002 * 110.84936 * 100.19648 * 4 2 1 33 33 H 1.09005 * 110.51510 * 336.98466 * 4 2 1 34 34 H 1.00900 * 111.00451 * 37.37294 * 7 5 4 35 35 H 1.09004 * 109.47467 * 299.99913 * 8 7 5 36 36 H 1.09002 * 109.46997 * 59.99331 * 8 7 5 37 37 H 0.96996 * 119.99953 * 359.97438 * 11 9 8 38 38 H 0.96996 * 120.00758 * 180.02562 * 15 14 12 39 39 H 1.08995 * 110.36896 * 204.15499 * 20 5 4 40 40 H 1.08996 * 110.36754 * 81.82936 * 20 5 4 41 41 H 1.08000 * 122.10843 * 179.97438 * 26 25 24 42 42 H 1.08000 * 125.45296 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 6 3.2862 -1.5185 -0.6915 6 1 4.1669 -0.8770 -0.6580 7 7 3.5490 -2.7276 -1.4833 8 6 4.9195 -3.2104 -1.2680 9 6 5.1513 -4.4492 -2.0941 10 8 4.2624 -4.8867 -2.7938 11 7 6.3464 -5.0711 -2.0555 12 6 6.5575 -6.1979 -2.8075 13 1 5.7660 -6.5874 -3.4305 14 6 7.7894 -6.8393 -2.7672 15 7 8.7524 -6.3657 -2.0087 16 14 8.0772 -8.3742 -3.7924 17 1 6.8445 -8.6990 -4.5540 18 1 9.1958 -8.1345 -4.7391 19 1 8.4199 -9.5095 -2.8984 20 6 2.8098 -1.8827 0.7368 21 7 2.0299 -0.7142 1.1839 22 6 1.8072 -0.3622 2.4656 23 8 1.0938 0.5893 2.7198 24 6 2.4280 -1.1298 3.5584 25 7 2.3893 -0.8142 4.8247 26 6 3.0059 -1.6326 5.6361 27 6 3.5976 -2.6907 5.0599 28 16 3.3410 -2.6237 3.3699 29 1 -0.3634 0.5194 0.8868 30 1 -0.3634 0.5083 -0.8932 31 1 -0.3635 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0192 33 1 1.3051 -1.4406 -1.6198 34 1 3.3732 -2.5635 -2.4632 35 1 5.6281 -2.4372 -1.5652 36 1 5.0602 -3.4459 -0.2131 37 1 7.0574 -4.7211 -1.4962 38 1 9.6125 -6.8133 -1.9809 39 1 3.6653 -2.0414 1.3931 40 1 2.1800 -2.7719 0.7114 41 1 3.0373 -1.4678 6.7030 42 1 4.1470 -3.4614 5.5801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278410670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:38 Heat of formation + Delta-G solvation = -33.383618 kcal Electronic energy + Delta-G solvation = -26487.196641 eV Core-core repulsion = 22593.477672 eV Total energy + Delta-G solvation = -3893.718969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.61652 -40.58975 -40.04132 -38.76154 -36.25030 -35.58912 -33.45659 -33.21038 -31.28451 -31.19098 -28.08925 -27.49018 -26.89675 -25.75247 -23.96946 -22.11799 -21.50131 -20.92920 -20.33666 -19.86249 -19.34262 -18.00671 -17.88418 -17.60845 -16.84111 -16.63247 -16.45890 -16.19310 -15.91901 -15.65802 -15.22439 -15.05873 -14.86170 -14.63674 -14.55343 -14.24755 -14.04759 -13.77869 -13.48654 -13.41905 -13.18502 -12.92431 -12.80804 -12.75725 -12.36116 -12.10190 -11.99928 -11.86970 -11.75463 -11.47984 -11.46949 -10.78828 -10.76566 -10.29188 -10.00839 -9.96489 -9.88767 -9.39460 -8.43144 -5.90799 -0.84350 0.10048 0.63195 1.23798 1.39124 1.45207 1.47664 1.58370 2.06807 2.11142 2.31598 2.76755 3.12093 3.25221 3.32339 3.57404 3.63053 3.81789 4.03724 4.07993 4.26013 4.27441 4.35212 4.35429 4.37911 4.45004 4.55299 4.61156 4.67489 4.75289 4.88580 4.95806 5.00683 5.13638 5.23529 5.35134 5.45824 5.89450 6.08309 6.12280 6.39525 6.50184 6.64709 6.82775 7.17755 7.62257 8.17324 8.74239 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.002750 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.839787 B =10179.419642 C =11915.174543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.086 0.914 4 C -0.118 4.118 5 C 0.083 3.917 6 H 0.080 0.920 7 N -0.665 5.665 8 C 0.061 3.939 9 C 0.440 3.560 10 O -0.621 6.621 11 N -0.574 5.574 12 C -0.329 4.329 13 H 0.079 0.921 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.988 3.012 17 H -0.273 1.273 18 H -0.273 1.273 19 H -0.273 1.273 20 C 0.093 3.907 21 N -0.601 5.601 22 C 0.608 3.392 23 O -0.545 6.545 24 C -0.051 4.051 25 N -0.435 5.435 26 C 0.008 3.992 27 C -0.266 4.266 28 S 0.249 5.751 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.357 0.643 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.397 0.603 38 H 0.276 0.724 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.201 0.799 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 10.823 9.932 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.104 0.896 4 C -0.156 4.156 5 C -0.028 4.028 6 H 0.098 0.902 7 N -0.299 5.299 8 C -0.071 4.071 9 C 0.228 3.772 10 O -0.507 6.507 11 N -0.212 5.212 12 C -0.459 4.459 13 H 0.097 0.903 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.812 3.188 17 H -0.198 1.198 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.031 4.031 21 N -0.335 5.335 22 C 0.393 3.607 23 O -0.422 6.422 24 C -0.324 4.324 25 N -0.152 5.152 26 C -0.148 4.148 27 C -0.406 4.406 28 S 0.504 5.496 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.179 0.821 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.218 0.782 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.947 10.442 9.462 16.692 hybrid contribution 1.222 0.035 0.691 1.404 sum -7.726 10.477 10.153 16.509 Atomic orbital electron populations 1.22115 0.94032 1.02499 1.03090 1.21775 0.95274 0.96550 0.82831 0.89587 1.22928 0.96925 0.99554 0.96153 1.22571 0.98496 0.90089 0.91663 0.90200 1.59888 1.23931 1.31504 1.14565 1.21647 0.90784 0.94006 1.00669 1.20851 0.82491 0.87847 0.86039 1.90509 1.44517 1.69331 1.46381 1.41935 1.12681 1.25138 1.41429 1.19670 0.98802 1.04103 1.23304 0.90313 1.25955 0.94721 1.01954 0.98523 1.69661 1.04624 1.41987 1.39836 0.84940 0.78149 0.77678 0.78021 1.19776 1.19850 1.19838 1.22731 0.95550 0.88565 0.96290 1.48300 1.52055 1.28893 1.04222 1.16474 0.80540 0.82911 0.80748 1.90794 1.38785 1.29489 1.83163 1.27259 1.09073 1.01047 0.95029 1.66598 1.16982 1.30259 1.01386 1.22209 0.98560 0.91450 1.02591 1.27701 1.06693 1.05087 1.01133 1.84428 1.43384 1.19137 1.02687 0.93404 0.89079 0.92435 0.86998 0.88773 0.82144 0.90941 0.87522 0.76945 0.91427 0.90025 0.89005 0.78213 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.10 71.98 0.66 -2.21 16 2 C 0.14 2.43 3.48 45.34 0.16 2.59 16 3 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.12 -1.66 5.96 31.79 0.19 -1.47 16 5 C 0.08 1.44 3.32 46.30 0.15 1.60 16 6 H 0.08 1.22 7.92 -2.38 -0.02 1.21 16 7 N -0.66 -16.15 6.00 -488.42 -2.93 -19.08 16 8 C 0.06 1.71 6.03 85.55 0.52 2.23 16 9 C 0.44 18.74 7.82 87.65 0.69 19.43 16 10 O -0.62 -31.48 15.78 -3.06 -0.05 -31.53 16 11 N -0.57 -27.21 5.29 -306.99 -1.62 -28.83 16 12 C -0.33 -17.72 9.68 84.04 0.81 -16.90 16 13 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 14 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 15 N -0.92 -47.47 13.05 21.66 0.28 -47.19 16 16 Si 0.99 41.28 29.55 68.60 2.03 43.31 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 C 0.09 1.76 5.26 86.85 0.46 2.21 16 21 N -0.60 -12.85 3.06 -792.10 -2.43 -15.28 16 22 C 0.61 16.69 7.65 86.62 0.66 17.35 16 23 O -0.54 -18.62 16.00 -4.07 -0.07 -18.68 16 24 C -0.05 -1.28 7.37 87.25 0.64 -0.64 16 25 N -0.43 -11.55 10.60 -190.31 -2.02 -13.57 16 26 C 0.01 0.14 11.24 83.95 0.94 1.09 16 27 C -0.27 -3.91 11.09 66.91 0.74 -3.17 16 28 S 0.25 4.39 18.72 -56.49 -1.06 3.34 16 29 H 0.05 1.11 6.78 -2.39 -0.02 1.09 16 30 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.41 7.84 -2.38 -0.02 1.39 16 34 H 0.36 9.04 8.23 -89.69 -0.74 8.30 16 35 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 36 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.40 17.75 7.90 -92.71 -0.73 17.02 16 38 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 39 H 0.08 1.44 4.95 -17.11 -0.08 1.35 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 42 H 0.22 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -73.24 365.02 -1.23 -74.47 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.46 Total: 31.07 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 7.09 Total: 21.96 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -8.72 Total: -123.94 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -0.11 Total: -50.21 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.06 Total: 3.34 kcal Total: -73.24 -1.23 -74.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278410670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.090 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds