Wall clock time and date at job start Tue Mar 31 2020 20:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.87274 * 2 1 4 4 C 1.54325 * 109.87945 * 121.01327 * 2 1 3 5 5 C 1.55157 * 102.94374 * 97.37918 * 4 2 1 6 6 H 1.09000 * 111.00346 * 277.43176 * 5 4 2 7 7 N 1.46495 * 111.00828 * 153.57764 * 5 4 2 8 8 C 1.34777 * 120.00234 * 155.00372 * 7 5 4 9 9 O 1.21277 * 120.00065 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99842 * 180.02562 * 8 7 5 11 11 S 1.81008 * 109.47141 * 179.97438 * 10 8 7 12 12 C 1.76202 * 100.00052 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99733 * 0.02562 * 12 11 10 14 14 C 1.38797 * 119.99720 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99999 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99651 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47291 * 60.00073 * 16 14 12 18 18 H 1.48504 * 109.46803 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47357 * 299.99750 * 16 14 12 20 20 C 1.54918 * 101.58155 * 35.49936 * 5 4 2 21 21 N 1.47015 * 110.01217 * 238.89706 * 2 1 3 22 22 C 1.34782 * 125.64929 * 59.47600 * 21 2 1 23 23 O 1.21609 * 119.99758 * 0.02562 * 22 21 2 24 24 C 1.47407 * 120.00207 * 179.97438 * 22 21 2 25 25 N 1.31614 * 125.86325 * 359.69709 * 24 22 21 26 26 C 1.33097 * 109.09343 * 179.83176 * 25 24 22 27 27 C 1.35563 * 108.35058 * 0.42713 * 26 25 24 28 28 N 1.35401 * 107.16141 * 359.74580 * 27 26 25 29 29 H 0.97002 * 126.44058 * 179.97438 * 28 27 26 30 30 H 1.09004 * 109.47255 * 298.98740 * 1 2 3 31 31 H 1.09001 * 109.46829 * 58.98337 * 1 2 3 32 32 H 1.09000 * 109.47377 * 178.97948 * 1 2 3 33 33 H 1.08996 * 110.72124 * 339.02017 * 4 2 1 34 34 H 1.08999 * 110.87305 * 215.81445 * 4 2 1 35 35 H 0.97000 * 119.99509 * 334.99522 * 7 5 4 36 36 H 1.09000 * 109.47081 * 299.99442 * 10 8 7 37 37 H 1.08994 * 109.47244 * 59.99523 * 10 8 7 38 38 H 0.96997 * 119.99488 * 179.97438 * 15 14 12 39 39 H 1.08999 * 110.35942 * 81.82689 * 20 5 4 40 40 H 1.08996 * 110.36556 * 204.15522 * 20 5 4 41 41 H 1.08007 * 125.82573 * 180.20888 * 26 25 24 42 42 H 1.08004 * 126.41750 * 179.70191 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 6 2.3556 -2.1674 0.6947 6 1 1.4502 -2.7735 0.6617 7 7 3.3977 -2.8265 1.4856 8 6 3.4627 -4.1721 1.5269 9 8 2.6582 -4.8373 0.9095 10 6 4.5344 -4.8501 2.3410 11 16 4.3574 -6.6456 2.1956 12 6 5.6968 -7.1685 3.2140 13 1 6.3252 -6.4356 3.6981 14 6 5.9441 -8.5224 3.3941 15 7 5.1778 -9.4156 2.8045 16 14 7.3637 -9.0768 4.4744 17 1 7.1671 -8.5614 5.8532 18 1 7.4133 -10.5607 4.5034 19 1 8.6386 -8.5491 3.9258 20 6 2.8618 -1.8474 -0.7341 21 7 2.0331 -0.7136 -1.1828 22 6 1.7793 -0.3854 -2.4652 23 8 1.0793 0.5760 -2.7196 24 6 2.3509 -1.1910 -3.5592 25 7 3.1254 -2.2457 -3.4168 26 6 3.4455 -2.7164 -4.6199 27 6 2.8618 -1.9282 -5.5558 28 7 2.1726 -0.9677 -4.8957 29 1 1.6506 -0.2548 -5.2961 30 1 -0.3634 0.4980 0.8989 31 1 -0.3633 0.5296 -0.8807 32 1 -0.3634 -1.0275 -0.0183 33 1 1.2908 -0.7886 2.0201 34 1 2.9635 -0.2805 1.6232 35 1 4.0410 -2.2945 1.9796 36 1 5.5152 -4.5503 1.9720 37 1 4.4350 -4.5590 3.3867 38 1 5.3510 -10.3617 2.9301 39 1 3.9134 -1.5620 -0.7088 40 1 2.7164 -2.7062 -1.3892 41 1 4.0673 -3.5772 -4.8171 42 1 2.9338 -2.0442 -6.6272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281169271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:44 Heat of formation + Delta-G solvation = -1.451855 kcal Electronic energy + Delta-G solvation = -26357.085838 eV Core-core repulsion = 22464.751534 eV Total energy + Delta-G solvation = -3892.334304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.51150 -40.45430 -39.07937 -37.58570 -34.21872 -33.20001 -32.41335 -32.20438 -30.60637 -29.76682 -28.37738 -26.12311 -25.47263 -24.55235 -22.36376 -21.79835 -21.25418 -20.40780 -19.89175 -18.38222 -17.86784 -17.09201 -16.62884 -16.15630 -15.79084 -15.60217 -14.91923 -14.83551 -14.77628 -14.39394 -14.28897 -14.06833 -13.85041 -13.72301 -13.54462 -13.14068 -13.09622 -12.56787 -12.51271 -12.40515 -11.97282 -11.56456 -11.46934 -11.03585 -11.02752 -10.92159 -10.75032 -10.56910 -10.51387 -10.34726 -9.81032 -9.41600 -9.11963 -9.04800 -8.94694 -8.76176 -8.22114 -6.48022 -6.20040 -3.90417 1.05779 2.13039 2.33122 2.90530 3.06384 3.14722 3.15093 3.24637 3.28937 3.32748 3.67206 3.95344 4.21914 4.28231 4.40318 4.59389 4.64658 4.91909 4.95488 5.04192 5.08771 5.10822 5.15067 5.20892 5.33713 5.49358 5.54946 5.59145 5.63420 5.73578 5.85635 5.90485 5.97509 6.03415 6.12611 6.15579 6.37370 6.58992 6.79097 7.09677 7.44161 7.60718 7.67754 7.81144 8.36510 8.59996 9.25196 10.87305 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015614 B = 0.002476 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.797538 B =11307.590169 C =12652.081843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.141 3.859 3 H 0.082 0.918 4 C -0.137 4.137 5 C 0.135 3.865 6 H 0.107 0.893 7 N -0.727 5.727 8 C 0.534 3.466 9 O -0.512 6.512 10 C -0.153 4.153 11 S -0.058 6.058 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.088 3.912 21 N -0.588 5.588 22 C 0.624 3.376 23 O -0.545 6.545 24 C 0.142 3.858 25 N -0.432 5.432 26 C -0.025 4.025 27 C -0.024 4.024 28 N -0.526 5.526 29 H 0.429 0.571 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.400 0.600 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.181 0.819 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 21.726 -11.509 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 H 0.100 0.900 4 C -0.175 4.175 5 C 0.028 3.972 6 H 0.125 0.875 7 N -0.382 5.382 8 C 0.321 3.679 9 O -0.385 6.385 10 C -0.304 4.304 11 S 0.168 5.832 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.036 4.036 21 N -0.321 5.321 22 C 0.411 3.589 23 O -0.423 6.423 24 C -0.118 4.118 25 N -0.154 5.154 26 C -0.178 4.178 27 C -0.163 4.163 28 N -0.129 5.129 29 H 0.268 0.732 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.130 0.870 41 H 0.198 0.802 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.970 20.628 -11.962 24.843 hybrid contribution 1.833 1.207 0.502 2.251 sum -5.137 21.835 -11.460 25.189 Atomic orbital electron populations 1.22195 0.94122 1.02954 1.03181 1.21578 0.95159 0.96240 0.83241 0.89991 1.23059 1.02777 0.94855 0.96855 1.21990 0.92634 0.92852 0.89711 0.87527 1.45853 1.33737 1.06802 1.51787 1.20354 0.85373 0.81317 0.80904 1.90717 1.40752 1.63764 1.43259 1.23530 0.99517 1.05564 1.01784 1.85414 1.42403 0.90167 1.65206 1.22829 1.16643 0.94625 1.34326 0.90980 1.24985 0.97043 0.95543 0.95993 1.70008 1.37412 1.01595 1.41279 0.86232 0.81440 0.77562 0.80309 1.19965 1.20841 1.19943 1.23110 0.94533 0.89789 0.96164 1.48007 1.49597 1.30583 1.03906 1.15989 0.79880 0.82686 0.80385 1.90818 1.39502 1.28679 1.83269 1.22519 1.05724 0.99518 0.84054 1.70384 1.11149 1.07122 1.26794 1.22656 1.04979 1.02730 0.87387 1.23027 1.00418 0.92855 0.99976 1.42919 1.38341 1.24935 1.06664 0.73198 0.91260 0.90991 0.92013 0.88844 0.89709 0.76527 0.89102 0.89180 0.92141 0.90645 0.86953 0.80158 0.79550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.06 37.16 0.34 -1.16 16 2 C 0.14 1.28 3.49 -66.96 -0.23 1.05 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.14 -1.07 6.14 -24.90 -0.15 -1.22 16 5 C 0.14 1.53 3.42 -65.78 -0.23 1.30 16 6 H 0.11 1.44 7.54 -51.93 -0.39 1.05 16 7 N -0.73 -8.97 5.20 -51.73 -0.27 -9.24 16 8 C 0.53 9.51 7.85 -10.99 -0.09 9.43 16 9 O -0.51 -11.25 15.50 5.56 0.09 -11.17 16 10 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 11 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 12 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 13 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 14 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 16 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.09 1.05 5.82 -2.52 -0.01 1.04 16 21 N -0.59 -6.70 3.08 -164.28 -0.51 -7.21 16 22 C 0.62 7.89 7.63 -12.53 -0.10 7.79 16 23 O -0.55 -7.57 16.00 5.27 0.08 -7.49 16 24 C 0.14 1.70 7.80 -154.52 -1.21 0.50 16 25 N -0.43 -5.52 8.28 -11.26 -0.09 -5.62 16 26 C -0.02 -0.25 11.85 -17.96 -0.21 -0.46 16 27 C -0.02 -0.17 12.00 -16.93 -0.20 -0.38 16 28 N -0.53 -4.53 6.14 -10.78 -0.07 -4.60 16 29 H 0.43 2.67 8.96 -40.82 -0.37 2.31 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.76 6.77 -51.93 -0.35 0.41 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.64 7.83 -51.93 -0.41 0.23 16 34 H 0.08 0.53 8.00 -51.93 -0.42 0.11 16 35 H 0.40 3.67 8.57 -40.82 -0.35 3.32 16 36 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 37 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.11 1.65 6.18 -51.93 -0.32 1.33 16 41 H 0.18 1.44 8.06 -52.48 -0.42 1.01 16 42 H 0.19 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -37.02 370.02 -8.89 -45.91 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.53 Total: 4.35 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.67 Total: 2.32 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.20 Total: -51.96 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.02 -8.89 -45.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281169271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.460 kcal (2) G-P(sol) polarization free energy of solvation -37.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds