Wall clock time and date at job start Tue Mar 31 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.87274 * 2 1 4 4 C 1.54325 * 109.87945 * 121.01327 * 2 1 3 5 5 C 1.55157 * 102.94374 * 97.37918 * 4 2 1 6 6 H 1.09000 * 111.00346 * 277.43176 * 5 4 2 7 7 N 1.46495 * 111.00828 * 153.57764 * 5 4 2 8 8 C 1.34777 * 120.00234 * 155.00372 * 7 5 4 9 9 O 1.21277 * 120.00065 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99842 * 180.02562 * 8 7 5 11 11 S 1.81008 * 109.47141 * 179.97438 * 10 8 7 12 12 C 1.76202 * 100.00052 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99733 * 0.02562 * 12 11 10 14 14 C 1.38797 * 119.99720 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99999 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99651 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47291 * 60.00073 * 16 14 12 18 18 H 1.48504 * 109.46803 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47357 * 299.99750 * 16 14 12 20 20 C 1.54918 * 101.58155 * 35.49936 * 5 4 2 21 21 N 1.47015 * 110.01217 * 238.89706 * 2 1 3 22 22 C 1.34782 * 125.64929 * 59.47600 * 21 2 1 23 23 O 1.21609 * 119.99758 * 0.02562 * 22 21 2 24 24 C 1.47407 * 120.00207 * 179.97438 * 22 21 2 25 25 N 1.31614 * 125.86325 * 359.69709 * 24 22 21 26 26 C 1.33097 * 109.09343 * 179.83176 * 25 24 22 27 27 C 1.35563 * 108.35058 * 0.42713 * 26 25 24 28 28 N 1.35401 * 107.16141 * 359.74580 * 27 26 25 29 29 H 0.97002 * 126.44058 * 179.97438 * 28 27 26 30 30 H 1.09004 * 109.47255 * 298.98740 * 1 2 3 31 31 H 1.09001 * 109.46829 * 58.98337 * 1 2 3 32 32 H 1.09000 * 109.47377 * 178.97948 * 1 2 3 33 33 H 1.08996 * 110.72124 * 339.02017 * 4 2 1 34 34 H 1.08999 * 110.87305 * 215.81445 * 4 2 1 35 35 H 0.97000 * 119.99509 * 334.99522 * 7 5 4 36 36 H 1.09000 * 109.47081 * 299.99442 * 10 8 7 37 37 H 1.08994 * 109.47244 * 59.99523 * 10 8 7 38 38 H 0.96997 * 119.99488 * 179.97438 * 15 14 12 39 39 H 1.08999 * 110.35942 * 81.82689 * 20 5 4 40 40 H 1.08996 * 110.36556 * 204.15522 * 20 5 4 41 41 H 1.08007 * 125.82573 * 180.20888 * 26 25 24 42 42 H 1.08004 * 126.41750 * 179.70191 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 6 2.3556 -2.1674 0.6947 6 1 1.4502 -2.7735 0.6617 7 7 3.3977 -2.8265 1.4856 8 6 3.4627 -4.1721 1.5269 9 8 2.6582 -4.8373 0.9095 10 6 4.5344 -4.8501 2.3410 11 16 4.3574 -6.6456 2.1956 12 6 5.6968 -7.1685 3.2140 13 1 6.3252 -6.4356 3.6981 14 6 5.9441 -8.5224 3.3941 15 7 5.1778 -9.4156 2.8045 16 14 7.3637 -9.0768 4.4744 17 1 7.1671 -8.5614 5.8532 18 1 7.4133 -10.5607 4.5034 19 1 8.6386 -8.5491 3.9258 20 6 2.8618 -1.8474 -0.7341 21 7 2.0331 -0.7136 -1.1828 22 6 1.7793 -0.3854 -2.4652 23 8 1.0793 0.5760 -2.7196 24 6 2.3509 -1.1910 -3.5592 25 7 3.1254 -2.2457 -3.4168 26 6 3.4455 -2.7164 -4.6199 27 6 2.8618 -1.9282 -5.5558 28 7 2.1726 -0.9677 -4.8957 29 1 1.6506 -0.2548 -5.2961 30 1 -0.3634 0.4980 0.8989 31 1 -0.3633 0.5296 -0.8807 32 1 -0.3634 -1.0275 -0.0183 33 1 1.2908 -0.7886 2.0201 34 1 2.9635 -0.2805 1.6232 35 1 4.0410 -2.2945 1.9796 36 1 5.5152 -4.5503 1.9720 37 1 4.4350 -4.5590 3.3867 38 1 5.3510 -10.3617 2.9301 39 1 3.9134 -1.5620 -0.7088 40 1 2.7164 -2.7062 -1.3892 41 1 4.0673 -3.5772 -4.8171 42 1 2.9338 -2.0442 -6.6272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281169271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:43 Heat of formation + Delta-G solvation = -28.963989 kcal Electronic energy + Delta-G solvation = -26358.278854 eV Core-core repulsion = 22464.751534 eV Total energy + Delta-G solvation = -3893.527320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.26568 -41.40973 -40.34730 -38.61700 -35.41216 -34.54742 -33.99124 -33.01414 -31.85023 -30.52330 -29.65506 -27.62022 -26.93596 -25.40293 -23.32670 -22.53328 -22.09781 -21.70122 -20.68712 -19.80603 -19.20786 -18.05022 -17.97309 -17.14066 -16.84567 -16.78418 -16.63078 -16.27019 -16.03952 -15.43674 -15.18676 -14.98556 -14.81977 -14.68910 -14.60704 -14.41474 -14.27408 -14.01113 -13.56561 -13.33646 -13.13298 -13.07282 -12.83794 -12.62284 -12.48783 -12.25021 -11.76928 -11.66291 -11.44035 -11.36739 -11.18032 -11.09476 -10.92155 -10.22535 -10.16373 -9.92332 -9.54837 -8.61958 -8.31046 -6.08433 0.25663 1.26195 1.36469 1.46318 1.50488 1.56856 1.59888 1.64542 2.15601 2.28343 2.31073 2.47530 3.03031 3.09082 3.36025 3.47134 3.55613 3.91001 3.95415 4.02582 4.12044 4.22021 4.31882 4.35361 4.37697 4.44281 4.57430 4.60628 4.75246 4.82453 4.88382 4.96099 4.97449 5.05378 5.24332 5.34754 5.45317 5.48238 5.62014 6.14861 6.17717 6.23245 6.53902 6.64267 6.95600 7.10323 7.28736 8.77848 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015614 B = 0.002476 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.797538 B =11307.590169 C =12652.081843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 H 0.095 0.905 4 C -0.119 4.119 5 C 0.134 3.866 6 H 0.082 0.918 7 N -0.698 5.698 8 C 0.537 3.463 9 O -0.561 6.561 10 C -0.129 4.129 11 S -0.152 6.152 12 C -0.545 4.545 13 H 0.084 0.916 14 C 0.013 3.987 15 N -0.912 5.912 16 Si 0.997 3.003 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.262 1.262 20 C 0.098 3.902 21 N -0.589 5.589 22 C 0.618 3.382 23 O -0.565 6.565 24 C 0.106 3.894 25 N -0.461 5.461 26 C -0.060 4.060 27 C 0.012 3.988 28 N -0.517 5.517 29 H 0.440 0.560 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.421 0.579 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.270 0.730 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.193 0.807 42 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.999 23.924 -10.843 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.113 0.887 4 C -0.157 4.157 5 C 0.027 3.973 6 H 0.100 0.900 7 N -0.352 5.352 8 C 0.323 3.677 9 O -0.439 6.439 10 C -0.280 4.280 11 S 0.075 5.925 12 C -0.693 4.693 13 H 0.102 0.898 14 C -0.192 4.192 15 N -0.549 5.549 16 Si 0.819 3.181 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.027 4.027 21 N -0.321 5.321 22 C 0.406 3.594 23 O -0.445 6.445 24 C -0.153 4.153 25 N -0.185 5.185 26 C -0.213 4.213 27 C -0.128 4.128 28 N -0.121 5.121 29 H 0.281 0.719 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.259 0.741 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.210 0.790 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.534 22.908 -11.266 26.121 hybrid contribution 1.351 0.610 0.161 1.492 sum -4.182 23.518 -11.105 26.342 Atomic orbital electron populations 1.22161 0.94140 1.02115 1.03555 1.21819 0.95228 0.96884 0.82823 0.88688 1.23060 1.04603 0.91563 0.96464 1.21985 0.91115 0.94447 0.89734 0.89963 1.45499 1.33933 1.04941 1.50876 1.20099 0.84419 0.82842 0.80291 1.90713 1.42499 1.65280 1.45378 1.23366 1.01183 0.99710 1.03723 1.85618 1.43364 0.97600 1.65935 1.23181 1.16612 0.95337 1.34174 0.89808 1.26117 1.00042 0.95616 0.97424 1.70183 1.39610 1.01955 1.43106 0.85020 0.77630 0.77023 0.78425 1.18628 1.20576 1.18664 1.22869 0.94873 0.89131 0.95785 1.48069 1.49336 1.30350 1.04310 1.16192 0.79697 0.82595 0.80945 1.90789 1.40503 1.29558 1.83626 1.22427 1.07416 1.00287 0.85167 1.70304 1.11789 1.07731 1.28636 1.23097 1.06584 1.04190 0.87392 1.23734 0.97113 0.90419 1.01522 1.42993 1.38019 1.25280 1.05776 0.71891 0.88639 0.92910 0.93324 0.87017 0.86863 0.74061 0.87075 0.86851 0.92070 0.90165 0.90012 0.79041 0.74833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.06 71.98 0.65 -2.10 16 2 C 0.13 2.24 3.49 45.34 0.16 2.40 16 3 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.12 -1.52 6.14 31.78 0.20 -1.32 16 5 C 0.13 2.91 3.42 46.39 0.16 3.07 16 6 H 0.08 2.27 7.54 -2.39 -0.02 2.25 16 7 N -0.70 -15.99 5.20 -435.97 -2.27 -18.25 16 8 C 0.54 18.95 7.85 87.66 0.69 19.64 16 9 O -0.56 -25.55 15.50 -3.02 -0.05 -25.60 16 10 C -0.13 -4.88 6.16 71.24 0.44 -4.45 16 11 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 12 C -0.55 -30.77 9.50 67.95 0.65 -30.13 16 13 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 14 C 0.01 0.72 5.49 84.86 0.47 1.18 16 15 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 16 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 17 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 20 C 0.10 2.36 5.82 86.86 0.51 2.86 16 21 N -0.59 -13.37 3.08 -791.91 -2.44 -15.82 16 22 C 0.62 15.96 7.63 86.66 0.66 16.62 16 23 O -0.57 -15.92 16.00 -4.06 -0.06 -15.99 16 24 C 0.11 2.59 7.80 136.28 1.06 3.65 16 25 N -0.46 -12.19 8.28 -189.53 -1.57 -13.76 16 26 C -0.06 -1.18 11.85 83.88 0.99 -0.19 16 27 C 0.01 0.16 12.00 83.52 1.00 1.16 16 28 N -0.52 -8.47 6.14 -188.02 -1.16 -9.62 16 29 H 0.44 5.01 8.96 -92.71 -0.83 4.18 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.11 6.77 -2.39 -0.02 1.10 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 1.11 7.83 -2.39 -0.02 1.10 16 34 H 0.11 0.88 8.00 -2.39 -0.02 0.86 16 35 H 0.42 6.29 8.57 -92.71 -0.79 5.49 16 36 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 38 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 2.55 6.18 -2.39 -0.01 2.53 16 41 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 42 H 0.24 0.52 8.06 -2.91 -0.02 0.49 16 Total: -1.00 -85.76 370.02 0.69 -85.07 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.55 Total: 21.48 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 7.63 Total: 12.40 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -7.15 Total: -113.12 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.11 Total: -41.59 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -85.76 0.69 -85.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281169271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.106 kcal (2) G-P(sol) polarization free energy of solvation -85.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds