Wall clock time and date at job start Tue Mar 31 2020 20:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.00209 * 2 1 4 4 C 1.54325 * 109.88067 * 121.10168 * 2 1 3 5 5 C 1.55158 * 102.94381 * 141.60517 * 4 2 1 6 6 H 1.09004 * 111.00267 * 82.57066 * 5 4 2 7 7 N 1.46494 * 111.00710 * 206.38689 * 5 4 2 8 8 C 1.34779 * 119.99981 * 205.00275 * 7 5 4 9 9 O 1.21275 * 120.00081 * 0.02562 * 8 7 5 10 10 C 1.50699 * 119.99659 * 179.97438 * 8 7 5 11 11 S 1.81002 * 109.46844 * 179.97438 * 10 8 7 12 12 C 1.76205 * 100.00117 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99645 * 0.02562 * 12 11 10 14 14 C 1.38792 * 119.99854 * 180.02562 * 12 11 10 15 15 N 1.31640 * 119.99962 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00501 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46941 * 89.99886 * 16 14 12 18 18 H 1.48498 * 109.47310 * 210.00132 * 16 14 12 19 19 H 1.48496 * 109.46917 * 330.00343 * 16 14 12 20 20 C 1.55128 * 101.48737 * 324.33452 * 5 4 2 21 21 N 1.47022 * 109.87914 * 238.90408 * 2 1 3 22 22 C 1.34777 * 125.64677 * 61.61431 * 21 2 1 23 23 O 1.21605 * 120.00226 * 0.26670 * 22 21 2 24 24 C 1.47416 * 119.99970 * 179.97438 * 22 21 2 25 25 N 1.31607 * 125.86222 * 0.02562 * 24 22 21 26 26 C 1.33099 * 109.09587 * 179.97438 * 25 24 22 27 27 C 1.35571 * 108.34922 * 0.02562 * 26 25 24 28 28 N 1.35398 * 107.15756 * 359.77258 * 27 26 25 29 29 H 0.97001 * 126.44273 * 180.24577 * 28 27 26 30 30 H 1.09000 * 109.47376 * 179.63476 * 1 2 3 31 31 H 1.08997 * 109.46953 * 299.63822 * 1 2 3 32 32 H 1.09001 * 109.46951 * 59.63725 * 1 2 3 33 33 H 1.08994 * 110.71826 * 259.97247 * 4 2 1 34 34 H 1.09005 * 110.71959 * 23.24440 * 4 2 1 35 35 H 0.96998 * 120.00047 * 24.99994 * 7 5 4 36 36 H 1.09000 * 109.47453 * 299.99659 * 10 8 7 37 37 H 1.09004 * 109.47714 * 60.00374 * 10 8 7 38 38 H 0.96994 * 119.99789 * 180.02562 * 15 14 12 39 39 H 1.09008 * 110.49601 * 278.45183 * 20 5 4 40 40 H 1.09000 * 110.34955 * 156.05811 * 20 5 4 41 41 H 1.08001 * 125.82897 * 180.02562 * 26 25 24 42 42 H 1.07994 * 126.42018 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7497 1.2427 5 6 3.2876 -1.5145 0.6923 6 1 4.1654 -0.8691 0.6603 7 7 3.5536 -2.7194 1.4819 8 6 4.7970 -3.2377 1.5223 9 8 5.6958 -2.7064 0.9053 10 6 5.0707 -4.4769 2.3351 11 16 6.8192 -4.9212 2.1875 12 6 6.8566 -6.3586 3.2059 13 1 5.9541 -6.7008 3.6903 14 6 8.0460 -7.0511 3.3853 15 7 8.0739 -8.1253 4.1457 16 14 9.6073 -6.4589 2.5479 17 1 10.3163 -5.5061 3.4395 18 1 10.4880 -7.6203 2.2642 19 1 9.2586 -5.7792 1.2745 20 6 2.8099 -1.8826 -0.7370 21 7 2.0300 -0.7141 -1.1839 22 6 1.8074 -0.3619 -2.4657 23 8 1.1457 0.6265 -2.7186 24 6 2.3716 -1.1713 -3.5611 25 7 3.1053 -2.2548 -3.4202 26 6 3.4346 -2.7171 -4.6241 27 6 2.8918 -1.8988 -5.5587 28 7 2.2185 -0.9281 -4.8972 29 1 1.7220 -0.1966 -5.2964 30 1 -0.3634 -1.0276 -0.0066 31 1 -0.3633 0.5082 0.8932 32 1 -0.3633 0.5195 -0.8867 33 1 2.3529 -0.0462 2.0200 34 1 1.3050 -1.4461 1.6181 35 1 2.8348 -3.1441 1.9757 36 1 4.8311 -4.2856 3.3811 37 1 4.4554 -5.2972 1.9655 38 1 8.9052 -8.6090 4.2714 39 1 2.1800 -2.7719 -0.7117 40 1 3.6654 -2.0413 -1.3934 41 1 4.0323 -3.5945 -4.8225 42 1 2.9773 -2.0036 -6.6302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281169274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:45 Heat of formation + Delta-G solvation = -28.855457 kcal Electronic energy + Delta-G solvation = -26381.854825 eV Core-core repulsion = 22488.332211 eV Total energy + Delta-G solvation = -3893.522614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.26549 -41.40107 -40.38101 -38.61548 -35.44749 -34.63853 -33.98509 -32.99179 -31.96320 -30.52103 -29.74462 -27.81674 -26.92388 -25.31224 -23.24372 -22.53434 -22.22840 -21.73085 -20.68351 -19.86136 -19.07427 -18.20948 -17.78613 -17.51735 -17.07817 -16.83217 -16.64560 -16.32167 -15.88313 -15.41948 -15.18361 -14.95547 -14.87379 -14.82470 -14.65603 -14.58552 -14.27341 -13.97495 -13.57758 -13.41521 -13.31087 -13.01656 -12.98962 -12.66004 -12.55144 -12.12858 -11.87529 -11.81045 -11.44328 -11.36352 -11.18959 -11.14190 -10.97596 -10.48589 -10.18101 -9.92749 -9.54709 -8.95187 -8.48734 -6.18571 0.25625 1.01420 1.33444 1.33653 1.50151 1.56529 1.58931 1.60008 2.13235 2.27539 2.28164 2.45123 2.75523 2.89751 3.10114 3.45256 3.55067 3.86696 3.93195 3.96236 4.16581 4.17793 4.30452 4.32146 4.35226 4.44402 4.53447 4.63262 4.73519 4.79805 4.91667 4.94153 4.98076 5.08640 5.22632 5.34988 5.45542 5.62292 5.73920 6.14484 6.14945 6.17926 6.49394 6.64007 6.95294 6.96974 7.22921 8.63636 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.002634 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.302047 B =10625.667035 C =12079.497931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.082 0.918 4 C -0.119 4.119 5 C 0.134 3.866 6 H 0.087 0.913 7 N -0.697 5.697 8 C 0.539 3.461 9 O -0.558 6.558 10 C -0.110 4.110 11 S -0.177 6.177 12 C -0.526 4.526 13 H 0.064 0.936 14 C 0.045 3.955 15 N -0.918 5.918 16 Si 0.913 3.087 17 H -0.263 1.263 18 H -0.261 1.261 19 H -0.236 1.236 20 C 0.097 3.903 21 N -0.589 5.589 22 C 0.618 3.382 23 O -0.567 6.567 24 C 0.107 3.893 25 N -0.460 5.460 26 C -0.059 4.059 27 C 0.012 3.988 28 N -0.518 5.518 29 H 0.439 0.561 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.421 0.579 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.276 0.724 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.193 0.807 42 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.470 16.652 -15.511 29.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.100 0.900 4 C -0.157 4.157 5 C 0.027 3.973 6 H 0.105 0.895 7 N -0.352 5.352 8 C 0.325 3.675 9 O -0.436 6.436 10 C -0.261 4.261 11 S 0.049 5.951 12 C -0.673 4.673 13 H 0.082 0.918 14 C -0.160 4.160 15 N -0.557 5.557 16 Si 0.735 3.265 17 H -0.188 1.188 18 H -0.185 1.185 19 H -0.160 1.160 20 C -0.027 4.027 21 N -0.321 5.321 22 C 0.405 3.595 23 O -0.446 6.446 24 C -0.153 4.153 25 N -0.184 5.184 26 C -0.212 4.212 27 C -0.129 4.129 28 N -0.121 5.121 29 H 0.281 0.719 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.260 0.740 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.210 0.790 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.074 17.618 -15.820 29.192 hybrid contribution -0.812 -0.622 -0.163 1.036 sum -17.886 16.996 -15.983 29.398 Atomic orbital electron populations 1.22095 0.93168 1.02745 1.03312 1.21840 0.95772 0.96534 0.82862 0.89994 1.23071 0.95937 1.00223 0.96424 1.22054 0.99040 0.86523 0.89660 0.89476 1.45484 1.09965 1.28854 1.50847 1.19984 0.82879 0.84370 0.80280 1.90711 1.45670 1.61874 1.45308 1.23265 0.99655 0.98897 1.04297 1.84762 1.10330 1.34438 1.65564 1.22471 0.99374 1.12317 1.33184 0.91811 1.25553 1.01676 0.94035 0.94765 1.70020 1.29137 1.18296 1.38200 0.85882 0.79876 0.79325 0.81392 1.18764 1.18504 1.16032 1.22919 0.96219 0.87719 0.95831 1.48080 1.51191 1.28547 1.04292 1.16204 0.79539 0.82753 0.80982 1.90793 1.42305 1.27835 1.83679 1.22413 1.08257 0.99445 0.85134 1.70291 1.11614 1.07889 1.28562 1.23100 1.06684 1.04023 0.87363 1.23736 0.97604 0.90011 1.01519 1.42999 1.38995 1.24304 1.05808 0.71924 0.92014 0.88815 0.93307 0.86921 0.87094 0.74040 0.86467 0.86674 0.91437 0.90325 0.89697 0.78958 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.10 71.98 0.66 -1.48 16 2 C 0.13 2.09 3.46 45.34 0.16 2.25 16 3 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 4 C -0.12 -1.38 6.12 31.78 0.19 -1.19 16 5 C 0.13 2.66 3.44 46.46 0.16 2.82 16 6 H 0.09 2.17 7.54 -2.39 -0.02 2.16 16 7 N -0.70 -14.60 5.20 -435.61 -2.26 -16.86 16 8 C 0.54 17.41 7.85 87.66 0.69 18.10 16 9 O -0.56 -23.12 15.50 -3.01 -0.05 -23.17 16 10 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 11 S -0.18 -8.80 18.55 -56.49 -1.05 -9.85 16 12 C -0.53 -30.20 10.04 67.95 0.68 -29.52 16 13 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 14 C 0.04 2.62 5.50 84.85 0.47 3.09 16 15 N -0.92 -55.69 13.97 21.65 0.30 -55.38 16 16 Si 0.91 44.84 27.74 68.60 1.90 46.74 16 17 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 20 C 0.10 2.19 5.84 86.93 0.51 2.70 16 21 N -0.59 -12.73 3.06 -791.44 -2.42 -15.15 16 22 C 0.62 15.36 7.64 86.66 0.66 16.02 16 23 O -0.57 -15.61 16.14 -4.05 -0.07 -15.67 16 24 C 0.11 2.48 7.81 136.28 1.06 3.54 16 25 N -0.46 -11.49 8.27 -189.52 -1.57 -13.06 16 26 C -0.06 -1.09 11.85 83.88 0.99 -0.09 16 27 C 0.01 0.13 12.00 83.53 1.00 1.14 16 28 N -0.52 -7.99 6.14 -188.02 -1.16 -9.15 16 29 H 0.44 4.67 8.96 -92.71 -0.83 3.84 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.91 6.89 -2.39 -0.02 0.89 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 0.83 7.71 -2.38 -0.02 0.81 16 35 H 0.42 5.73 8.57 -92.71 -0.79 4.94 16 36 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 37 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.08 2.46 6.15 -2.39 -0.01 2.45 16 41 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.23 0.31 8.06 -2.91 -0.02 0.29 16 Total: -1.00 -82.83 367.59 0.72 -82.11 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.59 Total: 15.57 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 7.67 Total: 13.88 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -7.11 Total: -109.61 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.11 Total: -38.84 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.85 kcal Total: -82.83 0.72 -82.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281169274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.255 kcal (2) G-P(sol) polarization free energy of solvation -82.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds