Wall clock time and date at job start Tue Mar 31 2020 20:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.87597 * 2 1 4 4 C 1.54320 * 109.88340 * 238.98358 * 2 1 3 5 5 C 1.55163 * 102.94613 * 218.39241 * 4 2 1 6 6 H 1.09000 * 111.00310 * 277.39584 * 5 4 2 7 7 N 1.46493 * 111.00658 * 153.57312 * 5 4 2 8 8 C 1.34784 * 119.99864 * 158.18021 * 7 5 4 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 5 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 5 11 11 S 1.81005 * 109.47244 * 179.97438 * 10 8 7 12 12 C 1.76192 * 100.00090 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00308 * 0.02562 * 12 11 10 14 14 C 1.38797 * 119.99747 * 180.02562 * 12 11 10 15 15 N 1.31631 * 120.00017 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00358 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46977 * 89.99919 * 16 14 12 18 18 H 1.48499 * 109.47666 * 210.00054 * 16 14 12 19 19 H 1.48501 * 109.47086 * 330.00437 * 16 14 12 20 20 C 1.54915 * 101.61466 * 35.48297 * 5 4 2 21 21 N 1.47025 * 109.87910 * 121.17772 * 2 1 3 22 22 C 1.34773 * 125.64794 * 298.38688 * 21 2 1 23 23 O 1.21609 * 120.00288 * 0.02562 * 22 21 2 24 24 C 1.47408 * 120.00234 * 180.02562 * 22 21 2 25 25 N 1.31618 * 125.86014 * 0.02651 * 24 22 21 26 26 C 1.33110 * 109.09346 * 179.97438 * 25 24 22 27 27 C 1.35557 * 108.34946 * 0.02562 * 26 25 24 28 28 N 1.35403 * 107.16285 * 359.77105 * 27 26 25 29 29 H 0.96999 * 126.44698 * 180.21946 * 28 27 26 30 30 H 1.08996 * 109.47272 * 181.01194 * 1 2 3 31 31 H 1.08998 * 109.47328 * 301.01829 * 1 2 3 32 32 H 1.09005 * 109.46882 * 61.01594 * 1 2 3 33 33 H 1.08996 * 110.72107 * 100.03086 * 4 2 1 34 34 H 1.09003 * 110.87647 * 336.82674 * 4 2 1 35 35 H 0.97000 * 120.00740 * 337.90713 * 7 5 4 36 36 H 1.08998 * 109.47224 * 299.99701 * 10 8 7 37 37 H 1.09002 * 109.47054 * 60.00213 * 10 8 7 38 38 H 0.97000 * 120.00320 * 180.02562 * 15 14 12 39 39 H 1.08997 * 110.36471 * 81.84782 * 20 5 4 40 40 H 1.08998 * 110.36764 * 204.17958 * 20 5 4 41 41 H 1.07999 * 125.82122 * 180.02562 * 26 25 24 42 42 H 1.08000 * 126.41777 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 3.2876 -1.5134 -0.6945 6 1 4.1656 -0.8682 -0.6621 7 7 3.5531 -2.7176 -1.4854 8 6 4.7811 -3.2731 -1.4756 9 8 5.6676 -2.7731 -0.8159 10 6 5.0526 -4.5153 -2.2843 11 16 6.7793 -5.0122 -2.0657 12 6 6.8173 -6.4454 -3.0899 13 1 5.9266 -6.7579 -3.6147 14 6 7.9920 -7.1728 -3.2222 15 7 8.0206 -8.2432 -3.9878 16 14 9.5328 -6.6320 -2.3151 17 1 9.5742 -7.2802 -0.9797 18 1 10.7320 -7.0293 -3.0956 19 1 9.5170 -5.1564 -2.1487 20 6 2.8155 -1.8806 0.7345 21 7 2.0299 -0.7158 1.1829 22 6 1.8074 -0.3655 2.4652 23 8 1.1411 0.6195 2.7196 24 6 2.3715 -1.1764 3.5593 25 7 3.1061 -2.2592 3.4169 26 6 3.4361 -2.7228 4.6202 27 6 2.8919 -1.9068 5.5560 28 7 2.2256 -0.9303 4.8958 29 1 1.7353 -0.1953 5.2960 30 1 -0.3633 -1.0275 0.0181 31 1 -0.3634 0.5295 0.8807 32 1 -0.3633 0.4980 -0.8990 33 1 2.3530 -0.0432 -2.0200 34 1 1.3065 -1.4436 -1.6232 35 1 2.8442 -3.1175 -2.0129 36 1 4.3976 -5.3187 -1.9472 37 1 4.8644 -4.3110 -3.3383 38 1 8.8414 -8.7518 -4.0800 39 1 2.1899 -2.7728 0.7098 40 1 3.6730 -2.0354 1.3893 41 1 4.0351 -3.5995 4.8173 42 1 2.9769 -2.0135 6.6273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281169277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:49 Heat of formation + Delta-G solvation = -1.482339 kcal Electronic energy + Delta-G solvation = -26404.962688 eV Core-core repulsion = 22512.627062 eV Total energy + Delta-G solvation = -3892.335626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.54283 -40.48828 -39.17811 -37.63480 -34.32426 -33.23502 -32.42750 -32.23350 -30.80011 -29.79832 -28.53836 -26.16753 -25.60448 -24.51703 -22.30708 -21.83013 -21.45586 -20.55340 -19.88064 -18.28417 -17.90244 -17.19987 -16.76813 -16.31012 -15.87319 -15.78364 -15.04508 -14.96668 -14.76461 -14.38902 -14.19092 -14.16142 -13.97216 -13.61741 -13.56933 -13.29962 -13.00312 -12.80496 -12.76343 -12.30284 -12.19757 -11.67092 -11.44363 -11.24923 -11.09115 -10.99641 -10.59885 -10.58559 -10.56388 -10.38516 -9.84874 -9.54483 -9.16810 -9.03297 -8.98056 -8.80804 -8.48594 -6.90237 -6.27859 -3.99348 1.02514 2.09288 2.29654 2.72244 2.93138 3.02717 3.11052 3.31784 3.35333 3.51826 3.63249 3.90444 4.22494 4.33615 4.34475 4.56645 4.58274 4.74579 4.89446 4.92469 4.96970 5.04187 5.05516 5.11352 5.27805 5.32706 5.43235 5.46588 5.54611 5.71129 5.77061 5.82414 5.89493 5.92571 6.02669 6.06194 6.33843 6.49417 6.75942 7.05584 7.40646 7.56915 7.77544 7.95203 8.42778 8.47001 9.18453 10.81395 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.002667 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.539007 B =10495.458372 C =11988.046740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.084 0.916 4 C -0.136 4.136 5 C 0.135 3.865 6 H 0.106 0.894 7 N -0.726 5.726 8 C 0.533 3.467 9 O -0.513 6.513 10 C -0.124 4.124 11 S -0.140 6.140 12 C -0.521 4.521 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.881 5.881 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.235 1.235 20 C 0.088 3.912 21 N -0.589 5.589 22 C 0.624 3.376 23 O -0.545 6.545 24 C 0.142 3.858 25 N -0.432 5.432 26 C -0.025 4.025 27 C -0.023 4.023 28 N -0.526 5.526 29 H 0.429 0.571 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.402 0.598 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.271 0.729 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.181 0.819 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.998 16.215 14.027 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.102 0.898 4 C -0.174 4.174 5 C 0.028 3.972 6 H 0.124 0.876 7 N -0.380 5.380 8 C 0.319 3.681 9 O -0.387 6.387 10 C -0.275 4.275 11 S 0.086 5.914 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.518 5.518 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.159 1.159 20 C -0.035 4.035 21 N -0.321 5.321 22 C 0.411 3.589 23 O -0.422 6.422 24 C -0.118 4.118 25 N -0.155 5.155 26 C -0.178 4.178 27 C -0.162 4.162 28 N -0.129 5.129 29 H 0.268 0.732 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.237 0.763 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.131 0.869 41 H 0.198 0.802 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -15.553 17.120 14.435 27.265 hybrid contribution -1.055 -0.359 0.354 1.169 sum -16.608 16.761 14.789 27.847 Atomic orbital electron populations 1.22160 0.94149 1.02640 1.03185 1.21604 0.95016 0.96515 0.83203 0.89795 1.23066 0.97440 1.00093 0.96828 1.22003 0.98170 0.87207 0.89841 0.87648 1.45814 1.12929 1.29059 1.50183 1.20327 0.81601 0.84902 0.81266 1.90718 1.44078 1.62372 1.41504 1.23275 1.04434 0.97214 1.02529 1.84807 1.06046 1.35592 1.64967 1.22319 1.01673 1.10664 1.32203 0.89383 1.24713 0.98516 0.93816 0.94284 1.69939 1.28493 1.16225 1.37112 0.86735 0.82594 0.82153 0.80377 1.19188 1.20000 1.15896 1.23107 0.96996 0.87381 0.96060 1.48019 1.51374 1.28821 1.03925 1.15988 0.79763 0.82805 0.80389 1.90822 1.40972 1.27182 1.83261 1.22518 1.06573 0.98666 0.84060 1.70386 1.10977 1.07318 1.26788 1.22652 1.05103 1.02625 0.87390 1.23027 1.01054 0.92176 0.99981 1.42920 1.39752 1.23513 1.06666 0.73185 0.92245 0.91113 0.91232 0.88920 0.89477 0.76350 0.88380 0.88409 0.91956 0.90657 0.86884 0.80176 0.79543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.10 37.16 0.34 -0.94 16 2 C 0.14 1.21 3.46 -66.95 -0.23 0.98 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.14 -0.99 6.11 -24.90 -0.15 -1.14 16 5 C 0.13 1.43 3.37 -65.78 -0.22 1.21 16 6 H 0.11 1.33 7.63 -51.93 -0.40 0.93 16 7 N -0.73 -8.39 5.21 -51.73 -0.27 -8.65 16 8 C 0.53 8.94 7.85 -10.98 -0.09 8.85 16 9 O -0.51 -10.64 15.55 5.56 0.09 -10.55 16 10 C -0.12 -2.30 6.16 36.00 0.22 -2.07 16 11 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 12 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 13 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 14 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 15 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 16 Si 0.86 21.66 27.74 -169.99 -4.71 16.94 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.23 -5.92 6.74 56.52 0.38 -5.54 16 20 C 0.09 1.02 5.83 -2.50 -0.01 1.01 16 21 N -0.59 -6.48 3.07 -164.24 -0.50 -6.98 16 22 C 0.62 7.69 7.64 -12.53 -0.10 7.60 16 23 O -0.55 -7.43 16.14 5.27 0.09 -7.34 16 24 C 0.14 1.66 7.80 -154.52 -1.21 0.45 16 25 N -0.43 -5.39 8.28 -11.26 -0.09 -5.48 16 26 C -0.02 -0.24 11.85 -17.96 -0.21 -0.45 16 27 C -0.02 -0.16 12.00 -16.93 -0.20 -0.37 16 28 N -0.53 -4.40 6.14 -10.78 -0.07 -4.46 16 29 H 0.43 2.57 8.96 -40.82 -0.37 2.21 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.69 6.90 -51.93 -0.36 0.33 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.51 7.71 -51.93 -0.40 0.11 16 35 H 0.40 3.42 8.54 -40.82 -0.35 3.08 16 36 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.10 1.67 8.14 -51.91 -0.42 1.25 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.11 1.61 6.17 -51.93 -0.32 1.29 16 41 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -36.77 367.66 -8.38 -45.15 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.57 Total: 3.75 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.65 Total: 3.28 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.16 Total: -51.27 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.17 Total: -17.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.77 -8.38 -45.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281169277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.663 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds