Wall clock time and date at job start Tue Mar 31 2020 20:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.87597 * 2 1 4 4 C 1.54320 * 109.88340 * 238.98358 * 2 1 3 5 5 C 1.55163 * 102.94613 * 218.39241 * 4 2 1 6 6 H 1.09000 * 111.00310 * 277.39584 * 5 4 2 7 7 N 1.46493 * 111.00658 * 153.57312 * 5 4 2 8 8 C 1.34784 * 119.99864 * 158.18021 * 7 5 4 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 5 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 5 11 11 S 1.81005 * 109.47244 * 179.97438 * 10 8 7 12 12 C 1.76192 * 100.00090 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00308 * 0.02562 * 12 11 10 14 14 C 1.38797 * 119.99747 * 180.02562 * 12 11 10 15 15 N 1.31631 * 120.00017 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00358 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46977 * 89.99919 * 16 14 12 18 18 H 1.48499 * 109.47666 * 210.00054 * 16 14 12 19 19 H 1.48501 * 109.47086 * 330.00437 * 16 14 12 20 20 C 1.54915 * 101.61466 * 35.48297 * 5 4 2 21 21 N 1.47025 * 109.87910 * 121.17772 * 2 1 3 22 22 C 1.34773 * 125.64794 * 298.38688 * 21 2 1 23 23 O 1.21609 * 120.00288 * 0.02562 * 22 21 2 24 24 C 1.47408 * 120.00234 * 180.02562 * 22 21 2 25 25 N 1.31618 * 125.86014 * 0.02651 * 24 22 21 26 26 C 1.33110 * 109.09346 * 179.97438 * 25 24 22 27 27 C 1.35557 * 108.34946 * 0.02562 * 26 25 24 28 28 N 1.35403 * 107.16285 * 359.77105 * 27 26 25 29 29 H 0.96999 * 126.44698 * 180.21946 * 28 27 26 30 30 H 1.08996 * 109.47272 * 181.01194 * 1 2 3 31 31 H 1.08998 * 109.47328 * 301.01829 * 1 2 3 32 32 H 1.09005 * 109.46882 * 61.01594 * 1 2 3 33 33 H 1.08996 * 110.72107 * 100.03086 * 4 2 1 34 34 H 1.09003 * 110.87647 * 336.82674 * 4 2 1 35 35 H 0.97000 * 120.00740 * 337.90713 * 7 5 4 36 36 H 1.08998 * 109.47224 * 299.99701 * 10 8 7 37 37 H 1.09002 * 109.47054 * 60.00213 * 10 8 7 38 38 H 0.97000 * 120.00320 * 180.02562 * 15 14 12 39 39 H 1.08997 * 110.36471 * 81.84782 * 20 5 4 40 40 H 1.08998 * 110.36764 * 204.17958 * 20 5 4 41 41 H 1.07999 * 125.82122 * 180.02562 * 26 25 24 42 42 H 1.08000 * 126.41777 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 3.2876 -1.5134 -0.6945 6 1 4.1656 -0.8682 -0.6621 7 7 3.5531 -2.7176 -1.4854 8 6 4.7811 -3.2731 -1.4756 9 8 5.6676 -2.7731 -0.8159 10 6 5.0526 -4.5153 -2.2843 11 16 6.7793 -5.0122 -2.0657 12 6 6.8173 -6.4454 -3.0899 13 1 5.9266 -6.7579 -3.6147 14 6 7.9920 -7.1728 -3.2222 15 7 8.0206 -8.2432 -3.9878 16 14 9.5328 -6.6320 -2.3151 17 1 9.5742 -7.2802 -0.9797 18 1 10.7320 -7.0293 -3.0956 19 1 9.5170 -5.1564 -2.1487 20 6 2.8155 -1.8806 0.7345 21 7 2.0299 -0.7158 1.1829 22 6 1.8074 -0.3655 2.4652 23 8 1.1411 0.6195 2.7196 24 6 2.3715 -1.1764 3.5593 25 7 3.1061 -2.2592 3.4169 26 6 3.4361 -2.7228 4.6202 27 6 2.8919 -1.9068 5.5560 28 7 2.2256 -0.9303 4.8958 29 1 1.7353 -0.1953 5.2960 30 1 -0.3633 -1.0275 0.0181 31 1 -0.3634 0.5295 0.8807 32 1 -0.3633 0.4980 -0.8990 33 1 2.3530 -0.0432 -2.0200 34 1 1.3065 -1.4436 -1.6232 35 1 2.8442 -3.1175 -2.0129 36 1 4.3976 -5.3187 -1.9472 37 1 4.8644 -4.3110 -3.3383 38 1 8.8414 -8.7518 -4.0800 39 1 2.1899 -2.7728 0.7098 40 1 3.6730 -2.0354 1.3893 41 1 4.0351 -3.5995 4.8173 42 1 2.9769 -2.0135 6.6273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281169277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:48 Heat of formation + Delta-G solvation = -28.843731 kcal Electronic energy + Delta-G solvation = -26406.149167 eV Core-core repulsion = 22512.627062 eV Total energy + Delta-G solvation = -3893.522105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.26529 -41.40381 -40.37667 -38.61395 -35.44774 -34.63978 -33.98448 -32.99297 -31.96742 -30.52338 -29.74556 -27.81686 -26.93235 -25.31341 -23.25042 -22.53711 -22.22821 -21.71816 -20.68130 -19.85705 -19.07573 -18.20674 -17.78238 -17.52804 -17.07953 -16.83121 -16.65594 -16.31462 -15.88480 -15.42293 -15.17710 -14.95687 -14.87423 -14.82825 -14.66081 -14.58981 -14.28317 -13.97053 -13.57164 -13.41935 -13.30909 -13.01351 -12.99101 -12.65223 -12.54186 -12.12628 -11.87920 -11.81230 -11.44154 -11.36378 -11.18465 -11.14162 -10.97576 -10.48564 -10.18658 -9.93010 -9.54929 -8.95186 -8.48742 -6.18528 0.25495 1.01394 1.33497 1.33779 1.49955 1.56333 1.59149 1.60115 2.13207 2.27545 2.28022 2.44984 2.75581 2.89765 3.09802 3.44414 3.55575 3.86708 3.93565 3.96154 4.16494 4.17864 4.30487 4.32003 4.35329 4.44250 4.53402 4.63327 4.73425 4.79808 4.91572 4.94195 4.98184 5.08734 5.22578 5.35111 5.45497 5.62072 5.73866 6.14471 6.14919 6.17587 6.49533 6.63954 6.95264 6.96958 7.23101 8.63637 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.002667 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.539007 B =10495.458372 C =11988.046740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.083 0.917 4 C -0.118 4.118 5 C 0.134 3.866 6 H 0.086 0.914 7 N -0.698 5.698 8 C 0.539 3.461 9 O -0.558 6.558 10 C -0.110 4.110 11 S -0.177 6.177 12 C -0.526 4.526 13 H 0.064 0.936 14 C 0.045 3.955 15 N -0.918 5.918 16 Si 0.913 3.087 17 H -0.263 1.263 18 H -0.261 1.261 19 H -0.236 1.236 20 C 0.098 3.902 21 N -0.589 5.589 22 C 0.618 3.382 23 O -0.566 6.566 24 C 0.107 3.893 25 N -0.460 5.460 26 C -0.059 4.059 27 C 0.012 3.988 28 N -0.518 5.518 29 H 0.439 0.561 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.421 0.579 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.276 0.724 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.193 0.807 42 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.208 17.252 14.745 29.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.101 0.899 4 C -0.156 4.156 5 C 0.028 3.972 6 H 0.104 0.896 7 N -0.352 5.352 8 C 0.324 3.676 9 O -0.435 6.435 10 C -0.261 4.261 11 S 0.049 5.951 12 C -0.674 4.674 13 H 0.082 0.918 14 C -0.160 4.160 15 N -0.557 5.557 16 Si 0.735 3.265 17 H -0.188 1.188 18 H -0.185 1.185 19 H -0.160 1.160 20 C -0.027 4.027 21 N -0.321 5.321 22 C 0.405 3.595 23 O -0.446 6.446 24 C -0.153 4.153 25 N -0.184 5.184 26 C -0.212 4.212 27 C -0.128 4.128 28 N -0.121 5.121 29 H 0.281 0.719 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.260 0.740 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.210 0.790 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -16.830 18.173 15.115 29.017 hybrid contribution -0.817 -0.664 0.209 1.074 sum -17.647 17.508 15.324 29.203 Atomic orbital electron populations 1.22095 0.93185 1.02692 1.03351 1.21836 0.95779 0.96533 0.82862 0.89922 1.23059 0.95855 1.00239 0.96428 1.22007 0.99054 0.86503 0.89658 0.89566 1.45495 1.11599 1.28718 1.49374 1.19987 0.82684 0.84278 0.80601 1.90715 1.45865 1.63484 1.43440 1.23264 0.99847 0.98681 1.04326 1.84758 1.12087 1.33982 1.64230 1.22471 1.00852 1.11905 1.32145 0.91822 1.25551 1.01455 0.93929 0.95092 1.70017 1.29669 1.17405 1.38564 0.85881 0.79526 0.81620 0.79439 1.18756 1.18515 1.16023 1.22878 0.96103 0.87794 0.95893 1.48091 1.51025 1.28683 1.04295 1.16201 0.79584 0.82709 0.80984 1.90793 1.42084 1.28073 1.83641 1.22421 1.08315 0.99379 0.85138 1.70306 1.11486 1.07990 1.28597 1.23094 1.06640 1.04088 0.87376 1.23731 0.97733 0.89852 1.01523 1.42998 1.39377 1.23924 1.05807 0.71917 0.92101 0.93301 0.88758 0.86788 0.87089 0.74030 0.86718 0.86451 0.91434 0.90487 0.89743 0.79011 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.10 71.98 0.65 -1.49 16 2 C 0.13 2.09 3.46 45.34 0.16 2.25 16 3 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.12 -1.36 6.11 31.78 0.19 -1.16 16 5 C 0.13 2.67 3.37 46.39 0.16 2.82 16 6 H 0.09 2.13 7.63 -2.39 -0.02 2.11 16 7 N -0.70 -14.61 5.21 -435.95 -2.27 -16.88 16 8 C 0.54 17.42 7.85 87.65 0.69 18.11 16 9 O -0.56 -23.11 15.55 -3.04 -0.05 -23.16 16 10 C -0.11 -3.94 6.16 71.23 0.44 -3.50 16 11 S -0.18 -8.79 18.55 -56.49 -1.05 -9.84 16 12 C -0.53 -30.23 10.04 67.95 0.68 -29.55 16 13 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 14 C 0.04 2.62 5.50 84.86 0.47 3.09 16 15 N -0.92 -55.71 13.97 21.65 0.30 -55.40 16 16 Si 0.91 44.85 27.74 68.60 1.90 46.75 16 17 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.24 -11.58 6.74 99.48 0.67 -10.91 16 20 C 0.10 2.23 5.83 86.85 0.51 2.73 16 21 N -0.59 -12.82 3.07 -791.79 -2.43 -15.24 16 22 C 0.62 15.47 7.64 86.66 0.66 16.13 16 23 O -0.57 -15.65 16.14 -4.06 -0.07 -15.72 16 24 C 0.11 2.50 7.80 136.28 1.06 3.57 16 25 N -0.46 -11.68 8.28 -189.52 -1.57 -13.25 16 26 C -0.06 -1.11 11.85 83.88 0.99 -0.12 16 27 C 0.01 0.14 12.00 83.52 1.00 1.14 16 28 N -0.52 -8.11 6.14 -188.02 -1.16 -9.26 16 29 H 0.44 4.75 8.96 -92.71 -0.83 3.92 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.91 6.90 -2.39 -0.02 0.90 16 32 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.82 7.71 -2.39 -0.02 0.80 16 35 H 0.42 5.72 8.54 -92.71 -0.79 4.93 16 36 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 37 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 38 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 2.49 6.17 -2.39 -0.01 2.47 16 41 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.23 0.37 8.06 -2.91 -0.02 0.34 16 Total: -1.00 -82.95 367.66 0.70 -82.25 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -0.58 Total: 15.73 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 7.67 Total: 14.02 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -7.12 Total: -110.05 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.11 Total: -38.87 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal Total: -82.95 0.70 -82.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281169277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.408 kcal (2) G-P(sol) polarization free energy of solvation -82.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds