Wall clock time and date at job start Tue Mar 31 2020 20:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 110.30355 * 2 1 4 4 C 1.54392 * 110.33847 * 122.28825 * 2 1 3 5 5 N 1.48146 * 104.61598 * 142.73824 * 4 2 1 6 6 C 1.34776 * 127.83891 * 140.43260 * 5 4 2 7 7 O 1.21622 * 119.99936 * 3.71686 * 6 5 4 8 8 C 1.47260 * 120.00131 * 183.71669 * 6 5 4 9 9 N 1.30553 * 125.54017 * 172.91179 * 8 6 5 10 10 C 1.30709 * 115.90418 * 179.97438 * 9 8 6 11 11 C 1.34234 * 115.78246 * 0.02562 * 10 9 8 12 12 S 1.71071 * 109.09254 * 359.72488 * 11 10 9 13 13 C 1.48151 * 104.32314 * 320.41268 * 5 4 2 14 14 C 1.54283 * 110.34282 * 237.82172 * 2 1 3 15 15 H 1.09005 * 110.33970 * 122.15306 * 14 2 1 16 16 N 1.46902 * 110.34238 * 0.02562 * 14 2 1 17 17 C 1.46907 * 110.99993 * 163.93223 * 16 14 2 18 18 C 1.50699 * 109.47251 * 180.02562 * 17 16 14 19 19 O 1.21297 * 119.99960 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99971 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99549 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00565 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99604 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99994 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00166 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46770 * 90.00141 * 25 23 21 27 27 H 1.48495 * 109.47538 * 210.00435 * 25 23 21 28 28 H 1.48507 * 109.47088 * 330.00844 * 25 23 21 29 29 H 1.09006 * 109.47412 * 176.24319 * 1 2 3 30 30 H 1.08992 * 109.47528 * 296.25174 * 1 2 3 31 31 H 1.09004 * 109.47168 * 56.25063 * 1 2 3 32 32 H 1.08995 * 110.40660 * 261.52118 * 4 2 1 33 33 H 1.09004 * 110.40667 * 23.83595 * 4 2 1 34 34 H 1.07991 * 122.10453 * 179.97438 * 10 9 8 35 35 H 1.07995 * 125.45202 * 179.97438 * 11 10 9 36 36 H 1.09002 * 110.40425 * 280.80378 * 13 5 4 37 37 H 1.09003 * 110.40518 * 158.37136 * 13 5 4 38 38 H 1.00900 * 111.00158 * 39.97736 * 16 14 2 39 39 H 1.08999 * 109.47314 * 59.99828 * 17 16 14 40 40 H 1.09003 * 109.46581 * 299.99623 * 17 16 14 41 41 H 0.96992 * 119.99841 * 359.97438 * 20 18 17 42 42 H 0.96996 * 120.00237 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0666 -0.7733 1.2238 5 7 3.2663 -1.4825 0.7213 6 6 4.4422 -1.6681 1.3532 7 8 4.5838 -1.2857 2.4990 8 6 5.5555 -2.3340 0.6563 9 7 6.7731 -2.4535 1.1120 10 6 7.6146 -3.0827 0.3345 11 6 7.1154 -3.5230 -0.8312 12 16 5.4591 -3.1050 -0.9240 13 6 2.8801 -1.9417 -0.6333 14 6 2.0664 -0.7704 -1.2244 15 1 2.7081 -0.1265 -1.8259 16 7 0.9524 -1.2799 -2.0353 17 6 1.4125 -1.6735 -3.3738 18 6 0.2449 -2.1892 -4.1748 19 8 -0.8617 -2.2257 -3.6793 20 7 0.4301 -2.6099 -5.4418 21 6 -0.6321 -3.0795 -6.1703 22 1 -1.6172 -3.1128 -5.7289 23 6 -0.4410 -3.5137 -7.4764 24 7 -1.4592 -3.9634 -8.1749 25 14 1.2630 -3.4568 -8.2397 26 1 1.9672 -4.7371 -7.9744 27 1 1.1423 -3.2528 -9.7056 28 1 2.0344 -2.3354 -7.6457 29 1 -0.3634 -1.0255 -0.0673 30 1 -0.3634 0.4545 0.9216 31 1 -0.3634 0.5710 -0.8545 32 1 2.3400 -0.0816 2.0205 33 1 1.3225 -1.4862 1.5791 34 1 8.6466 -3.2379 0.6122 35 1 7.6695 -4.0590 -1.5874 36 1 2.2638 -2.8384 -0.5692 37 1 3.7672 -2.1314 -1.2376 38 1 0.2079 -0.6014 -2.0939 39 1 2.1657 -2.4563 -3.2835 40 1 1.8451 -0.8094 -3.8779 41 1 1.3149 -2.5803 -5.8381 42 1 -1.3257 -4.2668 -9.0865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281458823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:36 Heat of formation + Delta-G solvation = 9.333192 kcal Electronic energy + Delta-G solvation = -26654.557887 eV Core-core repulsion = 22762.691258 eV Total energy + Delta-G solvation = -3891.866629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70129 -39.87077 -38.65151 -37.93799 -34.94556 -33.96072 -32.83381 -31.71892 -30.87811 -29.15986 -27.84952 -26.43702 -25.80901 -24.18169 -23.19352 -21.71646 -20.03304 -19.57164 -19.41335 -18.71734 -18.36841 -17.13411 -16.62240 -16.42199 -15.95140 -15.70084 -15.48498 -15.34921 -14.87754 -14.50436 -14.33050 -14.09484 -13.83171 -13.60067 -13.33571 -13.19069 -12.94634 -12.63413 -12.56817 -12.17311 -12.09397 -11.89017 -11.73389 -11.25805 -11.17543 -11.02455 -10.84468 -10.75076 -10.65829 -10.06388 -10.03968 -10.02249 -9.64119 -9.33469 -9.16349 -8.69977 -8.35282 -8.24593 -6.37285 -3.89089 -0.12120 0.79359 1.26014 2.00878 2.24353 2.87733 2.95903 3.00727 3.09867 3.64612 3.66902 3.97845 4.04365 4.17078 4.30074 4.49474 4.60955 4.73256 4.74734 4.92549 4.97374 5.05578 5.13052 5.19586 5.30918 5.38987 5.42836 5.49308 5.58251 5.61888 5.66486 5.69268 5.80997 5.85345 5.91604 6.27017 6.90494 6.94548 7.20947 7.38194 7.50995 7.67282 8.07593 8.52415 8.88355 9.35474 9.74536 10.75733 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.003120 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.009815 B = 8973.320661 C =11036.526176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 H 0.084 0.916 4 C 0.119 3.881 5 N -0.617 5.617 6 C 0.618 3.382 7 O -0.503 6.503 8 C -0.010 4.010 9 N -0.399 5.399 10 C 0.024 3.976 11 C -0.281 4.281 12 S 0.207 5.793 13 C 0.103 3.897 14 C 0.077 3.923 15 H 0.058 0.942 16 N -0.658 5.658 17 C 0.042 3.958 18 C 0.449 3.551 19 O -0.564 6.564 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.362 0.638 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.370 0.630 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.742 5.095 13.275 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 H 0.102 0.898 4 C -0.003 4.003 5 N -0.353 5.353 6 C 0.402 3.598 7 O -0.377 6.377 8 C -0.285 4.285 9 N -0.115 5.115 10 C -0.132 4.132 11 C -0.421 4.421 12 S 0.462 5.538 13 C -0.022 4.022 14 C -0.034 4.034 15 H 0.076 0.924 16 N -0.295 5.295 17 C -0.091 4.091 18 C 0.235 3.765 19 O -0.446 6.446 20 N -0.228 5.228 21 C -0.435 4.435 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.705 3.295 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.195 0.805 35 H 0.200 0.800 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.186 0.814 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.203 0.797 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.449 4.615 14.139 20.736 hybrid contribution 2.747 0.468 -1.349 3.096 sum 17.196 5.082 12.790 22.025 Atomic orbital electron populations 1.21758 0.92628 1.04252 1.01762 1.22227 0.97692 0.99024 0.93392 0.89776 1.22494 0.85132 0.95821 0.96834 1.48629 1.12596 1.56141 1.17889 1.16150 0.79560 0.79081 0.85013 1.90863 1.81038 1.49822 1.15972 1.27353 0.96429 1.07900 0.96842 1.66603 1.00112 1.13133 1.31687 1.21817 1.01400 0.99446 0.90558 1.27323 1.02795 1.08130 1.03892 1.84425 1.04855 1.46903 1.17621 1.22885 0.98009 0.99489 0.81813 1.22341 0.92822 0.93695 0.94568 0.92406 1.60295 1.09211 1.47084 1.12869 1.21819 0.97516 1.00191 0.89567 1.19631 0.89834 0.84490 0.82581 1.90575 1.25453 1.58519 1.70006 1.42201 1.10177 1.58236 1.12218 1.19428 0.90848 1.38309 0.94874 0.86223 1.25045 0.97644 0.97223 0.96194 1.69615 1.30025 1.41657 1.10661 0.86687 0.84073 0.78711 0.79984 1.19569 1.20174 1.19531 0.89911 0.92301 0.91923 0.89444 0.89700 0.80497 0.79965 0.87747 0.91159 0.81361 0.89529 0.93453 0.79714 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 7.81 37.16 0.29 -0.95 16 2 C -0.10 -0.86 3.66 -89.22 -0.33 -1.19 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.12 1.09 6.58 -2.41 -0.02 1.07 16 5 N -0.62 -6.56 3.32 -170.63 -0.57 -7.13 16 6 C 0.62 8.12 7.90 -12.59 -0.10 8.02 16 7 O -0.50 -8.26 17.36 5.26 0.09 -8.17 16 8 C -0.01 -0.12 7.39 -14.43 -0.11 -0.22 16 9 N -0.40 -5.06 10.60 -11.51 -0.12 -5.18 16 10 C 0.02 0.22 11.24 -19.44 -0.22 0.00 16 11 C -0.28 -2.15 11.09 29.32 0.33 -1.82 16 12 S 0.21 1.78 18.85 -107.50 -2.03 -0.25 16 13 C 0.10 0.98 5.71 -2.41 -0.01 0.96 16 14 C 0.08 0.74 3.35 -66.31 -0.22 0.51 16 15 H 0.06 0.51 7.96 -51.93 -0.41 0.10 16 16 N -0.66 -8.16 4.97 -106.51 -0.53 -8.69 16 17 C 0.04 0.58 6.01 -4.97 -0.03 0.55 16 18 C 0.45 9.24 7.82 -10.99 -0.09 9.15 16 19 O -0.56 -13.92 15.78 5.54 0.09 -13.84 16 20 N -0.59 -13.05 5.09 -10.96 -0.06 -13.10 16 21 C -0.31 -8.25 10.16 -14.93 -0.15 -8.41 16 22 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -24.93 13.96 55.50 0.77 -24.15 16 25 Si 0.88 18.44 27.74 -169.99 -4.71 13.73 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.27 -5.08 6.52 56.52 0.37 -4.72 16 29 H 0.08 0.84 7.55 -51.93 -0.39 0.45 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.55 7.04 -51.93 -0.37 0.18 16 32 H 0.09 0.81 7.91 -51.93 -0.41 0.39 16 33 H 0.08 0.74 7.86 -51.93 -0.41 0.33 16 34 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.10 1.05 8.06 -51.93 -0.42 0.63 16 37 H 0.07 0.61 3.99 -23.66 -0.09 0.52 16 38 H 0.36 4.70 5.86 -39.29 -0.23 4.47 16 39 H 0.09 1.03 7.88 -51.93 -0.41 0.62 16 40 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.37 7.13 5.76 -40.82 -0.24 6.89 16 42 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 358.68 15.07 5.41 5.41 Total: -1.00 -34.30 358.68 -7.45 -41.75 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.04 Total: 10.92 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -0.75 Total: 8.71 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.50 Total: -58.25 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.18 Total: -22.01 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.71 Total: 13.73 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.03 Total: -0.25 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.30 -7.45 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281458823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.084 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds