Wall clock time and date at job start Tue Mar 31 2020 20:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 110.30355 * 2 1 4 4 C 1.54392 * 110.33847 * 122.28825 * 2 1 3 5 5 N 1.48146 * 104.61598 * 142.73824 * 4 2 1 6 6 C 1.34776 * 127.83891 * 140.43260 * 5 4 2 7 7 O 1.21622 * 119.99936 * 3.71686 * 6 5 4 8 8 C 1.47260 * 120.00131 * 183.71669 * 6 5 4 9 9 N 1.30553 * 125.54017 * 172.91179 * 8 6 5 10 10 C 1.30709 * 115.90418 * 179.97438 * 9 8 6 11 11 C 1.34234 * 115.78246 * 0.02562 * 10 9 8 12 12 S 1.71071 * 109.09254 * 359.72488 * 11 10 9 13 13 C 1.48151 * 104.32314 * 320.41268 * 5 4 2 14 14 C 1.54283 * 110.34282 * 237.82172 * 2 1 3 15 15 H 1.09005 * 110.33970 * 122.15306 * 14 2 1 16 16 N 1.46902 * 110.34238 * 0.02562 * 14 2 1 17 17 C 1.46907 * 110.99993 * 163.93223 * 16 14 2 18 18 C 1.50699 * 109.47251 * 180.02562 * 17 16 14 19 19 O 1.21297 * 119.99960 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99971 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99549 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00565 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99604 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99994 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00166 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46770 * 90.00141 * 25 23 21 27 27 H 1.48495 * 109.47538 * 210.00435 * 25 23 21 28 28 H 1.48507 * 109.47088 * 330.00844 * 25 23 21 29 29 H 1.09006 * 109.47412 * 176.24319 * 1 2 3 30 30 H 1.08992 * 109.47528 * 296.25174 * 1 2 3 31 31 H 1.09004 * 109.47168 * 56.25063 * 1 2 3 32 32 H 1.08995 * 110.40660 * 261.52118 * 4 2 1 33 33 H 1.09004 * 110.40667 * 23.83595 * 4 2 1 34 34 H 1.07991 * 122.10453 * 179.97438 * 10 9 8 35 35 H 1.07995 * 125.45202 * 179.97438 * 11 10 9 36 36 H 1.09002 * 110.40425 * 280.80378 * 13 5 4 37 37 H 1.09003 * 110.40518 * 158.37136 * 13 5 4 38 38 H 1.00900 * 111.00158 * 39.97736 * 16 14 2 39 39 H 1.08999 * 109.47314 * 59.99828 * 17 16 14 40 40 H 1.09003 * 109.46581 * 299.99623 * 17 16 14 41 41 H 0.96992 * 119.99841 * 359.97438 * 20 18 17 42 42 H 0.96996 * 120.00237 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0666 -0.7733 1.2238 5 7 3.2663 -1.4825 0.7213 6 6 4.4422 -1.6681 1.3532 7 8 4.5838 -1.2857 2.4990 8 6 5.5555 -2.3340 0.6563 9 7 6.7731 -2.4535 1.1120 10 6 7.6146 -3.0827 0.3345 11 6 7.1154 -3.5230 -0.8312 12 16 5.4591 -3.1050 -0.9240 13 6 2.8801 -1.9417 -0.6333 14 6 2.0664 -0.7704 -1.2244 15 1 2.7081 -0.1265 -1.8259 16 7 0.9524 -1.2799 -2.0353 17 6 1.4125 -1.6735 -3.3738 18 6 0.2449 -2.1892 -4.1748 19 8 -0.8617 -2.2257 -3.6793 20 7 0.4301 -2.6099 -5.4418 21 6 -0.6321 -3.0795 -6.1703 22 1 -1.6172 -3.1128 -5.7289 23 6 -0.4410 -3.5137 -7.4764 24 7 -1.4592 -3.9634 -8.1749 25 14 1.2630 -3.4568 -8.2397 26 1 1.9672 -4.7371 -7.9744 27 1 1.1423 -3.2528 -9.7056 28 1 2.0344 -2.3354 -7.6457 29 1 -0.3634 -1.0255 -0.0673 30 1 -0.3634 0.4545 0.9216 31 1 -0.3634 0.5710 -0.8545 32 1 2.3400 -0.0816 2.0205 33 1 1.3225 -1.4862 1.5791 34 1 8.6466 -3.2379 0.6122 35 1 7.6695 -4.0590 -1.5874 36 1 2.2638 -2.8384 -0.5692 37 1 3.7672 -2.1314 -1.2376 38 1 0.2079 -0.6014 -2.0939 39 1 2.1657 -2.4563 -3.2835 40 1 1.8451 -0.8094 -3.8779 41 1 1.3149 -2.5803 -5.8381 42 1 -1.3257 -4.2668 -9.0865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281458823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:36 Heat of formation + Delta-G solvation = -18.626510 kcal Electronic energy + Delta-G solvation = -26655.770311 eV Core-core repulsion = 22762.691258 eV Total energy + Delta-G solvation = -3893.079053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54336 -40.66677 -40.12264 -39.02039 -36.19604 -35.59593 -33.80120 -33.57137 -31.57911 -30.10605 -28.72435 -27.73756 -26.53186 -25.64850 -24.10852 -22.47883 -21.24032 -20.80582 -20.31137 -20.16091 -19.41381 -17.96732 -17.69591 -17.38873 -17.02963 -16.96406 -16.65929 -16.24785 -16.03989 -15.56394 -15.34426 -15.13529 -14.94642 -14.67763 -14.43799 -14.34697 -14.10820 -13.84940 -13.70708 -13.51987 -13.07284 -12.90124 -12.74298 -12.48064 -12.35962 -11.98521 -11.89842 -11.79611 -11.68165 -11.52410 -11.45505 -10.82363 -10.76367 -10.36420 -10.19397 -10.09626 -9.93275 -9.34026 -8.36620 -5.97185 -0.84983 0.08182 0.59629 1.23087 1.33495 1.39663 1.43372 1.48387 2.02890 2.05573 2.27351 2.71306 2.99832 3.20526 3.39840 3.46547 3.59492 3.79969 3.92995 4.15249 4.19723 4.28318 4.32928 4.35863 4.40986 4.52545 4.55577 4.65035 4.67595 4.75596 4.84296 4.95211 5.01242 5.10454 5.22049 5.54934 5.57657 5.93921 6.06495 6.10776 6.39425 6.49844 6.64740 6.79091 6.94189 7.46233 8.03226 8.81085 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.003120 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.009815 B = 8973.320661 C =11036.526176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.099 0.901 4 C 0.115 3.885 5 N -0.612 5.612 6 C 0.614 3.386 7 O -0.552 6.552 8 C -0.052 4.052 9 N -0.435 5.435 10 C 0.006 3.994 11 C -0.262 4.262 12 S 0.255 5.745 13 C 0.103 3.897 14 C 0.081 3.919 15 H 0.079 0.921 16 N -0.670 5.670 17 C 0.054 3.946 18 C 0.451 3.549 19 O -0.612 6.612 20 N -0.592 5.592 21 C -0.325 4.325 22 H 0.055 0.945 23 C -0.017 4.017 24 N -0.938 5.938 25 Si 0.963 3.037 26 H -0.257 1.257 27 H -0.280 1.280 28 H -0.227 1.227 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.200 0.800 35 H 0.218 0.782 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.358 0.642 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.390 0.610 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.555 5.521 12.120 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.118 0.882 4 C -0.007 4.007 5 N -0.345 5.345 6 C 0.400 3.600 7 O -0.430 6.430 8 C -0.325 4.325 9 N -0.153 5.153 10 C -0.150 4.150 11 C -0.402 4.402 12 S 0.509 5.491 13 C -0.021 4.021 14 C -0.030 4.030 15 H 0.096 0.904 16 N -0.307 5.307 17 C -0.078 4.078 18 C 0.238 3.762 19 O -0.496 6.496 20 N -0.234 5.234 21 C -0.454 4.454 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.579 5.579 25 Si 0.783 3.217 26 H -0.181 1.181 27 H -0.206 1.206 28 H -0.150 1.150 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.217 0.783 35 H 0.235 0.765 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.182 0.818 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.225 0.775 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.256 5.060 12.996 22.974 hybrid contribution 1.457 0.283 -0.941 1.758 sum 19.714 5.342 12.055 23.717 Atomic orbital electron populations 1.21689 0.92809 1.03056 1.02375 1.22183 0.97343 0.99494 0.92336 0.88242 1.22604 0.84779 0.95955 0.97349 1.48643 1.12207 1.55454 1.18225 1.16455 0.80313 0.78638 0.84642 1.90817 1.82035 1.52163 1.18004 1.27124 0.96095 1.10160 0.99124 1.66587 1.01008 1.14156 1.33507 1.22207 1.02154 0.99651 0.90996 1.27778 1.02372 1.06349 1.03727 1.84072 1.05280 1.45182 1.14557 1.22939 0.98484 0.99364 0.81325 1.22378 0.92102 0.93885 0.94600 0.90364 1.60259 1.10244 1.47816 1.12416 1.21775 0.94518 1.02145 0.89366 1.20970 0.91138 0.81967 0.82075 1.90562 1.28384 1.59671 1.70955 1.42024 1.09732 1.58941 1.12698 1.18995 0.90145 1.40288 0.96016 0.92657 1.26121 1.03414 0.95880 0.96128 1.69810 1.33568 1.43151 1.11330 0.85393 0.77340 0.80682 0.78275 1.18107 1.20580 1.14980 0.91873 0.91045 0.92057 0.89713 0.89530 0.78323 0.76484 0.88168 0.89890 0.81816 0.86415 0.90075 0.77457 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 7.81 71.98 0.56 -1.66 16 2 C -0.09 -1.37 3.66 -9.89 -0.04 -1.41 16 3 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.11 1.99 6.58 86.54 0.57 2.56 16 5 N -0.61 -12.31 3.32 -811.99 -2.69 -15.00 16 6 C 0.61 16.07 7.90 86.62 0.68 16.75 16 7 O -0.55 -18.79 17.36 -4.10 -0.07 -18.87 16 8 C -0.05 -1.19 7.39 87.26 0.65 -0.54 16 9 N -0.43 -10.67 10.60 -190.31 -2.02 -12.69 16 10 C 0.01 0.09 11.24 83.95 0.94 1.03 16 11 C -0.26 -2.96 11.09 66.91 0.74 -2.22 16 12 S 0.25 3.51 18.85 -56.49 -1.06 2.44 16 13 C 0.10 1.69 5.71 86.53 0.49 2.18 16 14 C 0.08 1.29 3.35 45.82 0.15 1.44 16 15 H 0.08 1.01 7.96 -2.38 -0.02 0.99 16 16 N -0.67 -14.95 4.97 -490.88 -2.44 -17.39 16 17 C 0.05 1.30 6.01 85.56 0.51 1.81 16 18 C 0.45 18.00 7.82 87.66 0.69 18.68 16 19 O -0.61 -30.88 15.78 -3.08 -0.05 -30.93 16 20 N -0.59 -25.44 5.09 -306.98 -1.56 -27.00 16 21 C -0.33 -18.06 10.16 84.04 0.85 -17.21 16 22 H 0.06 3.70 7.39 -2.91 -0.02 3.68 16 23 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 24 N -0.94 -55.01 13.96 21.66 0.30 -54.71 16 25 Si 0.96 36.38 27.74 68.60 1.90 38.29 16 26 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 27 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 28 H -0.23 -6.92 6.52 99.48 0.65 -6.28 16 29 H 0.06 1.26 7.55 -2.38 -0.02 1.24 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.99 7.04 -2.38 -0.02 0.98 16 32 H 0.08 1.54 7.91 -2.39 -0.02 1.52 16 33 H 0.09 1.47 7.86 -2.39 -0.02 1.45 16 34 H 0.20 2.04 8.06 -2.92 -0.02 2.02 16 35 H 0.22 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.10 1.78 8.06 -2.39 -0.02 1.76 16 37 H 0.08 1.13 3.99 -20.36 -0.08 1.05 16 38 H 0.36 8.70 5.86 -89.69 -0.53 8.18 16 39 H 0.12 2.17 7.88 -2.39 -0.02 2.15 16 40 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 41 H 0.39 13.52 5.76 -92.71 -0.53 12.98 16 42 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -82.56 358.68 -0.52 -83.08 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -0.10 Total: 31.80 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 7.28 Total: 20.98 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -8.41 Total: -126.79 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -0.12 Total: -49.80 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 1.90 Total: 38.29 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.06 Total: 2.44 kcal Total: -82.56 -0.52 -83.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281458823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.451 kcal (2) G-P(sol) polarization free energy of solvation -82.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds