Wall clock time and date at job start Tue Mar 31 2020 20:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47434 * 2 1 4 4 N 1.46500 * 109.47231 * 120.00406 * 2 1 3 5 5 C 1.34786 * 119.99739 * 274.99802 * 4 2 1 6 6 O 1.21276 * 119.99657 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99872 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.46956 * 180.02562 * 7 5 4 9 9 C 1.76195 * 99.99817 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00146 * 359.97438 * 9 8 7 11 11 C 1.38797 * 119.99947 * 180.02562 * 9 8 7 12 12 N 1.31632 * 120.00272 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00087 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46890 * 90.00037 * 13 11 9 15 15 H 1.48502 * 109.46850 * 210.00055 * 13 11 9 16 16 H 1.48497 * 109.47096 * 330.00128 * 13 11 9 17 17 C 1.53001 * 109.46993 * 240.00207 * 2 1 3 18 18 H 1.08995 * 109.47182 * 299.99826 * 17 2 1 19 19 C 1.53006 * 109.47140 * 180.02562 * 17 2 1 20 20 N 1.46500 * 109.47488 * 60.00245 * 17 2 1 21 21 C 1.34772 * 119.99977 * 205.00175 * 20 17 2 22 22 O 1.21477 * 120.00278 * 359.97438 * 21 20 17 23 23 C 1.48460 * 119.99988 * 179.97438 * 21 20 17 24 24 C 1.39531 * 120.54934 * 179.97438 * 23 21 20 25 25 C 1.38767 * 118.26048 * 180.02562 * 24 23 21 26 26 N 1.32197 * 119.14738 * 0.02562 * 25 24 23 27 27 C 1.31888 * 121.03994 * 359.97438 * 26 25 24 28 28 N 1.31584 * 121.91236 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47014 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46572 * 300.00109 * 1 2 3 31 31 H 1.08997 * 109.47122 * 59.99633 * 1 2 3 32 32 H 0.96996 * 120.00727 * 94.99463 * 4 2 1 33 33 H 1.09004 * 109.47337 * 300.00492 * 7 5 4 34 34 H 1.09004 * 109.46597 * 60.00038 * 7 5 4 35 35 H 0.96994 * 120.00438 * 179.97438 * 12 11 9 36 36 H 1.09009 * 109.46747 * 299.99870 * 19 17 2 37 37 H 1.08997 * 109.47415 * 59.99304 * 19 17 2 38 38 H 1.08994 * 109.47274 * 180.02562 * 19 17 2 39 39 H 0.97000 * 119.99535 * 24.99370 * 20 17 2 40 40 H 1.07998 * 120.86993 * 0.04274 * 24 23 21 41 41 H 1.07998 * 120.42251 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.04225 * 180.28788 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8583 1.1583 2.4117 7 6 2.6489 -0.7289 3.5877 8 16 2.7093 0.4340 4.9735 9 6 3.3126 -0.6312 6.2407 10 1 3.5219 -1.6676 6.0207 11 6 3.5179 -0.1386 7.5219 12 7 3.2613 1.1242 7.7905 13 14 4.1568 -1.2681 8.8657 14 1 5.6412 -1.2289 8.8809 15 1 3.6361 -0.8165 10.1810 16 1 3.7010 -2.6569 8.6032 17 6 2.0400 -0.7212 -1.2493 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7218 -1.2490 20 7 1.5517 -0.0306 -2.4455 21 6 1.4230 -0.7029 -3.6064 22 8 1.7123 -1.8815 -3.6611 23 6 0.9277 -0.0032 -4.8184 24 6 0.7905 -0.6880 -6.0264 25 6 0.3238 0.0127 -7.1295 26 7 0.0279 1.2946 -7.0001 27 6 0.1693 1.9117 -5.8431 28 7 0.6082 1.2877 -4.7710 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2490 -1.6318 1.1526 33 1 1.9761 -1.5508 3.8325 34 1 3.6481 -1.1215 3.3985 35 1 3.4044 1.4684 8.6860 36 1 3.9337 0.3058 -1.2488 37 1 3.9331 -1.2358 -0.3590 38 1 3.9334 -1.2352 -2.1392 39 1 1.3210 0.9106 -2.4018 40 1 1.0407 -1.7359 -6.1008 41 1 0.2047 -0.4828 -8.0817 42 1 -0.0866 2.9586 -5.7726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285295992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:38 Heat of formation + Delta-G solvation = -25.363357 kcal Electronic energy + Delta-G solvation = -25535.623507 eV Core-core repulsion = 21642.252322 eV Total energy + Delta-G solvation = -3893.371185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75465 -40.23674 -39.27349 -36.93392 -34.67226 -33.98212 -32.67905 -32.44159 -31.27103 -30.19174 -28.53316 -26.22272 -25.49982 -24.96539 -24.03017 -22.01590 -21.04546 -20.34603 -19.08919 -18.20979 -17.84373 -16.76330 -16.44042 -16.03854 -16.00237 -15.72548 -15.61009 -15.06877 -14.85371 -14.81334 -14.35034 -14.22796 -14.06621 -13.93065 -13.61978 -13.23973 -12.75499 -12.59502 -12.48030 -12.03893 -11.88642 -11.58343 -11.57503 -11.41756 -11.07544 -11.03816 -10.95775 -10.90680 -10.76779 -10.36130 -9.92809 -9.83114 -9.62887 -9.44716 -9.08563 -8.97511 -8.25805 -6.51691 -6.23056 -3.93743 -0.08735 0.31897 2.24243 2.33581 3.02385 3.04646 3.21592 3.26069 3.26701 3.29632 3.37162 3.54288 3.70142 4.00088 4.19023 4.21964 4.28494 4.43268 4.67407 4.87379 4.92968 5.01269 5.08803 5.12262 5.24030 5.27569 5.42847 5.50897 5.60132 5.64347 5.64952 5.82300 5.86315 5.95140 6.01247 6.11034 6.12827 6.19727 6.55416 6.95113 7.35371 7.58304 7.60971 7.63501 8.33916 8.55146 9.22448 10.84334 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.037247 B = 0.001776 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.562429 B =15758.148152 C =16189.190777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 H 0.095 0.905 4 N -0.731 5.731 5 C 0.536 3.464 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.134 3.866 18 H 0.097 0.903 19 C -0.164 4.164 20 N -0.695 5.695 21 C 0.573 3.427 22 O -0.522 6.522 23 C 0.132 3.868 24 C -0.169 4.169 25 C 0.151 3.849 26 N -0.507 5.507 27 C 0.296 3.704 28 N -0.496 5.496 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.414 0.586 40 H 0.162 0.838 41 H 0.178 0.822 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 -3.974 -29.485 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.113 0.887 4 N -0.386 5.386 5 C 0.322 3.678 6 O -0.388 6.388 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C 0.029 3.971 18 H 0.115 0.885 19 C -0.222 4.222 20 N -0.347 5.347 21 C 0.356 3.644 22 O -0.397 6.397 23 C -0.016 4.016 24 C -0.192 4.192 25 C -0.016 4.016 26 N -0.221 5.221 27 C 0.008 3.992 28 N -0.212 5.212 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.233 0.767 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.251 0.749 40 H 0.179 0.821 41 H 0.195 0.805 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.719 -1.753 -29.149 29.757 hybrid contribution 0.920 -2.894 0.689 3.114 sum -4.800 -4.648 -28.460 29.233 Atomic orbital electron populations 1.22203 0.94837 1.02396 1.02856 1.20988 0.94478 0.97850 0.83463 0.88720 1.45938 1.69620 1.13945 1.09084 1.20307 0.76702 0.87197 0.83582 1.90703 1.48098 1.15733 1.84286 1.23538 1.03738 1.04916 0.98249 1.85391 1.86317 1.12828 0.98733 1.22868 1.51005 0.98183 0.96370 0.90907 1.24990 0.95074 0.95544 0.97948 1.70012 1.45454 1.13263 1.21549 0.86171 0.79007 0.80198 0.80143 1.20267 1.20747 1.19698 1.21270 0.94979 0.97638 0.83175 0.88534 1.22186 0.94056 1.03024 1.02964 1.45769 1.65312 1.14952 1.08649 1.17751 0.78223 0.86001 0.82453 1.90819 1.49728 1.14772 1.84341 1.21629 0.94994 0.90493 0.94473 1.23023 0.99147 1.03780 0.93267 1.23413 0.89697 0.89615 0.98903 1.68395 1.15376 1.10784 1.27512 1.25066 0.90577 1.00878 0.82648 1.68363 1.11146 1.08747 1.32984 0.92392 0.91153 0.91875 0.76655 0.89145 0.89143 0.92173 0.91901 0.90728 0.91893 0.74908 0.82051 0.80496 0.77886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.33 37.16 0.35 -1.37 16 2 C 0.14 1.48 2.21 -67.93 -0.15 1.33 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 N -0.73 -8.91 4.38 -53.80 -0.24 -9.15 16 5 C 0.54 9.39 7.81 -10.98 -0.09 9.30 16 6 O -0.51 -11.03 15.52 5.56 0.09 -10.95 16 7 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 9 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 10 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 11 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 13 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.13 1.21 2.21 -67.93 -0.15 1.06 16 18 H 0.10 0.90 7.58 -51.93 -0.39 0.51 16 19 C -0.16 -1.49 9.33 37.16 0.35 -1.14 16 20 N -0.69 -5.89 4.38 -54.55 -0.24 -6.13 16 21 C 0.57 5.48 7.79 -12.05 -0.09 5.38 16 22 O -0.52 -6.22 16.09 5.39 0.09 -6.14 16 23 C 0.13 1.09 6.79 -82.64 -0.56 0.52 16 24 C -0.17 -1.07 9.72 -38.90 -0.38 -1.45 16 25 C 0.15 0.79 11.31 -17.20 -0.19 0.59 16 26 N -0.51 -3.45 10.42 -14.59 -0.15 -3.60 16 27 C 0.30 1.90 12.28 -92.25 -1.13 0.77 16 28 N -0.50 -3.82 9.70 -11.14 -0.11 -3.93 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 32 H 0.40 3.81 8.39 -40.82 -0.34 3.47 16 33 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 34 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.66 7.44 -51.93 -0.39 0.27 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.41 3.16 7.77 -40.82 -0.32 2.84 16 40 H 0.16 0.84 7.74 -52.49 -0.41 0.44 16 41 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.20 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -36.02 380.10 -8.52 -44.54 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.55 Total: 3.00 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.63 Total: -0.59 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.00 Total: -48.03 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.17 Total: -17.08 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.02 -8.52 -44.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285295992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.175 kcal (2) G-P(sol) polarization free energy of solvation -36.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds