Wall clock time and date at job start Tue Mar 31 2020 20:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47434 * 2 1 4 4 N 1.46500 * 109.47231 * 120.00406 * 2 1 3 5 5 C 1.34786 * 119.99739 * 274.99802 * 4 2 1 6 6 O 1.21276 * 119.99657 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99872 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.46956 * 180.02562 * 7 5 4 9 9 C 1.76195 * 99.99817 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00146 * 359.97438 * 9 8 7 11 11 C 1.38797 * 119.99947 * 180.02562 * 9 8 7 12 12 N 1.31632 * 120.00272 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00087 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46890 * 90.00037 * 13 11 9 15 15 H 1.48502 * 109.46850 * 210.00055 * 13 11 9 16 16 H 1.48497 * 109.47096 * 330.00128 * 13 11 9 17 17 C 1.53001 * 109.46993 * 240.00207 * 2 1 3 18 18 H 1.08995 * 109.47182 * 299.99826 * 17 2 1 19 19 C 1.53006 * 109.47140 * 180.02562 * 17 2 1 20 20 N 1.46500 * 109.47488 * 60.00245 * 17 2 1 21 21 C 1.34772 * 119.99977 * 205.00175 * 20 17 2 22 22 O 1.21477 * 120.00278 * 359.97438 * 21 20 17 23 23 C 1.48460 * 119.99988 * 179.97438 * 21 20 17 24 24 C 1.39531 * 120.54934 * 179.97438 * 23 21 20 25 25 C 1.38767 * 118.26048 * 180.02562 * 24 23 21 26 26 N 1.32197 * 119.14738 * 0.02562 * 25 24 23 27 27 C 1.31888 * 121.03994 * 359.97438 * 26 25 24 28 28 N 1.31584 * 121.91236 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47014 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46572 * 300.00109 * 1 2 3 31 31 H 1.08997 * 109.47122 * 59.99633 * 1 2 3 32 32 H 0.96996 * 120.00727 * 94.99463 * 4 2 1 33 33 H 1.09004 * 109.47337 * 300.00492 * 7 5 4 34 34 H 1.09004 * 109.46597 * 60.00038 * 7 5 4 35 35 H 0.96994 * 120.00438 * 179.97438 * 12 11 9 36 36 H 1.09009 * 109.46747 * 299.99870 * 19 17 2 37 37 H 1.08997 * 109.47415 * 59.99304 * 19 17 2 38 38 H 1.08994 * 109.47274 * 180.02562 * 19 17 2 39 39 H 0.97000 * 119.99535 * 24.99370 * 20 17 2 40 40 H 1.07998 * 120.86993 * 0.04274 * 24 23 21 41 41 H 1.07998 * 120.42251 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.04225 * 180.28788 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8583 1.1583 2.4117 7 6 2.6489 -0.7289 3.5877 8 16 2.7093 0.4340 4.9735 9 6 3.3126 -0.6312 6.2407 10 1 3.5219 -1.6676 6.0207 11 6 3.5179 -0.1386 7.5219 12 7 3.2613 1.1242 7.7905 13 14 4.1568 -1.2681 8.8657 14 1 5.6412 -1.2289 8.8809 15 1 3.6361 -0.8165 10.1810 16 1 3.7010 -2.6569 8.6032 17 6 2.0400 -0.7212 -1.2493 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7218 -1.2490 20 7 1.5517 -0.0306 -2.4455 21 6 1.4230 -0.7029 -3.6064 22 8 1.7123 -1.8815 -3.6611 23 6 0.9277 -0.0032 -4.8184 24 6 0.7905 -0.6880 -6.0264 25 6 0.3238 0.0127 -7.1295 26 7 0.0279 1.2946 -7.0001 27 6 0.1693 1.9117 -5.8431 28 7 0.6082 1.2877 -4.7710 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2490 -1.6318 1.1526 33 1 1.9761 -1.5508 3.8325 34 1 3.6481 -1.1215 3.3985 35 1 3.4044 1.4684 8.6860 36 1 3.9337 0.3058 -1.2488 37 1 3.9331 -1.2358 -0.3590 38 1 3.9334 -1.2352 -2.1392 39 1 1.3210 0.9106 -2.4018 40 1 1.0407 -1.7359 -6.1008 41 1 0.2047 -0.4828 -8.0817 42 1 -0.0866 2.9586 -5.7726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285295992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:37 Heat of formation + Delta-G solvation = -51.346965 kcal Electronic energy + Delta-G solvation = -25536.750241 eV Core-core repulsion = 21642.252322 eV Total energy + Delta-G solvation = -3894.497919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.28461 -41.14858 -40.38055 -37.94918 -35.41463 -34.80254 -34.57170 -33.16730 -32.40129 -31.03690 -29.89127 -27.64783 -26.80899 -25.43582 -24.86816 -22.86588 -21.87458 -21.54863 -19.97086 -19.62424 -18.69649 -17.99047 -17.38081 -16.89372 -16.86964 -16.54463 -16.49232 -16.45060 -16.36453 -15.77235 -15.53550 -15.06451 -14.94996 -14.74641 -14.61038 -14.48448 -14.38949 -13.78222 -13.37733 -13.25203 -13.14987 -12.88885 -12.75985 -12.60724 -12.53975 -12.04580 -11.94996 -11.83958 -11.71103 -11.65261 -11.13464 -10.96372 -10.84590 -10.44770 -10.42709 -10.25980 -10.09434 -8.64697 -8.33877 -6.11242 -0.63729 -0.11195 1.25039 1.42797 1.44193 1.54584 1.58218 1.61778 1.73400 2.27650 2.36703 2.75446 2.82166 3.00398 3.17533 3.31854 3.36804 3.51516 3.75828 3.83225 3.97273 4.02472 4.06441 4.31854 4.36809 4.43491 4.51755 4.53843 4.61169 4.67273 4.69009 4.82213 4.92644 5.18088 5.21002 5.22758 5.23538 5.43130 5.45722 5.70507 6.20798 6.25782 6.47832 6.83436 6.94648 7.07816 7.23757 8.75172 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.037247 B = 0.001776 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.562429 B =15758.148152 C =16189.190777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 H 0.081 0.919 4 N -0.705 5.705 5 C 0.541 3.459 6 O -0.559 6.559 7 C -0.131 4.131 8 S -0.149 6.149 9 C -0.547 4.547 10 H 0.083 0.917 11 C 0.014 3.986 12 N -0.911 5.911 13 Si 0.997 3.003 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.259 1.259 17 C 0.146 3.854 18 H 0.101 0.899 19 C -0.161 4.161 20 N -0.689 5.689 21 C 0.574 3.426 22 O -0.549 6.549 23 C 0.112 3.888 24 C -0.169 4.169 25 C 0.158 3.842 26 N -0.521 5.521 27 C 0.290 3.710 28 N -0.508 5.508 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.416 0.584 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.419 0.581 40 H 0.171 0.829 41 H 0.213 0.787 42 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 -5.943 -31.090 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.100 0.900 4 N -0.360 5.360 5 C 0.326 3.674 6 O -0.437 6.437 7 C -0.282 4.282 8 S 0.079 5.921 9 C -0.694 4.694 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.819 3.181 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.182 1.182 17 C 0.041 3.959 18 H 0.119 0.881 19 C -0.220 4.220 20 N -0.341 5.341 21 C 0.358 3.642 22 O -0.425 6.425 23 C -0.035 4.035 24 C -0.192 4.192 25 C -0.009 4.009 26 N -0.235 5.235 27 C 0.003 3.997 28 N -0.225 5.225 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.254 0.746 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.256 0.744 40 H 0.189 0.811 41 H 0.229 0.771 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.630 -3.749 -30.792 31.526 hybrid contribution 0.848 -2.289 0.998 2.637 sum -4.782 -6.038 -29.794 30.774 Atomic orbital electron populations 1.22140 0.94290 1.02909 1.02382 1.21029 0.94771 0.97262 0.83279 0.90039 1.45633 1.67828 1.14570 1.07972 1.19972 0.76523 0.86521 0.84335 1.90698 1.50365 1.17601 1.85010 1.23384 1.05657 1.03233 0.95952 1.85553 1.86689 1.17192 1.02713 1.23214 1.50826 0.98529 0.96875 0.89913 1.26102 0.95103 0.97168 1.00721 1.70176 1.46818 1.15484 1.22255 0.84977 0.78501 0.78241 0.76407 1.19344 1.20370 1.18246 1.21094 0.94927 0.97445 0.82458 0.88129 1.22162 0.93893 1.02804 1.03093 1.45713 1.64960 1.15107 1.08328 1.17956 0.77627 0.85708 0.82885 1.90798 1.51053 1.15855 1.84831 1.21552 0.96355 0.91069 0.94546 1.23206 0.98798 1.04265 0.92922 1.23997 0.88024 0.89091 0.99828 1.68479 1.15782 1.11576 1.27627 1.25590 0.89965 1.01868 0.82295 1.68351 1.11814 1.08647 1.33710 0.91338 0.93761 0.90227 0.74616 0.87237 0.87054 0.92027 0.92308 0.90253 0.92095 0.74371 0.81134 0.77056 0.75566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.33 71.98 0.67 -2.50 16 2 C 0.14 2.89 2.21 44.99 0.10 2.99 16 3 H 0.08 1.96 7.58 -2.39 -0.02 1.94 16 4 N -0.71 -16.16 4.38 -442.52 -1.94 -18.10 16 5 C 0.54 18.68 7.81 87.66 0.68 19.36 16 6 O -0.56 -24.48 15.52 -3.02 -0.05 -24.53 16 7 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 8 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 9 C -0.55 -30.85 9.50 67.95 0.65 -30.20 16 10 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 11 C 0.01 0.78 5.49 84.86 0.47 1.25 16 12 N -0.91 -55.59 13.22 21.65 0.29 -55.31 16 13 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 15 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 17 C 0.15 2.41 2.21 44.99 0.10 2.51 16 18 H 0.10 1.67 7.58 -2.39 -0.02 1.65 16 19 C -0.16 -2.71 9.33 71.98 0.67 -2.04 16 20 N -0.69 -10.98 4.38 -444.82 -1.95 -12.92 16 21 C 0.57 10.44 7.79 86.97 0.68 11.11 16 22 O -0.55 -12.54 16.09 -3.64 -0.06 -12.60 16 23 C 0.11 1.72 6.79 41.99 0.29 2.01 16 24 C -0.17 -1.88 9.72 22.71 0.22 -1.66 16 25 C 0.16 1.29 11.31 84.76 0.96 2.25 16 26 N -0.52 -6.12 10.42 -200.09 -2.09 -8.21 16 27 C 0.29 3.31 12.28 180.92 2.22 5.53 16 28 N -0.51 -7.31 9.70 -189.15 -1.84 -9.15 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.32 7.45 -2.39 -0.02 1.31 16 32 H 0.42 6.89 8.39 -92.71 -0.78 6.11 16 33 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 34 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.08 1.25 7.44 -2.39 -0.02 1.23 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.42 6.03 7.77 -92.71 -0.72 5.31 16 40 H 0.17 1.51 7.74 -2.91 -0.02 1.49 16 41 H 0.21 0.06 8.06 -2.91 -0.02 0.04 16 42 H 0.23 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -80.07 380.10 0.95 -79.12 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.43 Total: 19.53 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 8.14 Total: 6.08 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -7.52 Total: -103.69 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.11 Total: -37.13 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -80.07 0.95 -79.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285295992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.774 kcal (2) G-P(sol) polarization free energy of solvation -80.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds