Wall clock time and date at job start Tue Mar 31 2020 20:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47130 * 2 1 4 4 N 1.46500 * 109.47432 * 239.98979 * 2 1 3 5 5 C 1.34772 * 119.99342 * 85.00429 * 4 2 1 6 6 O 1.21276 * 120.00414 * 359.97438 * 5 4 2 7 7 C 1.50711 * 119.99472 * 180.02562 * 5 4 2 8 8 S 1.81000 * 109.46969 * 179.97438 * 7 5 4 9 9 C 1.76191 * 99.99901 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00032 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00331 * 179.97438 * 9 8 7 12 12 N 1.31631 * 120.00314 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 119.99469 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47368 * 90.00081 * 13 11 9 15 15 H 1.48505 * 109.46935 * 209.99828 * 13 11 9 16 16 H 1.48499 * 109.47352 * 329.99688 * 13 11 9 17 17 C 1.53006 * 109.46728 * 119.99118 * 2 1 3 18 18 C 1.53948 * 113.74258 * 281.68031 * 17 2 1 19 19 N 1.47585 * 86.11404 * 222.04912 * 18 17 2 20 20 C 1.34779 * 134.48732 * 204.64367 * 19 18 17 21 21 O 1.21567 * 119.99788 * 179.97438 * 20 19 18 22 22 C 1.47705 * 120.00147 * 359.97438 * 20 19 18 23 23 C 1.41505 * 126.51803 * 180.02562 * 22 20 19 24 24 C 1.35367 * 105.50519 * 180.02562 * 23 22 20 25 25 N 1.35032 * 107.22627 * 359.97438 * 24 23 22 26 26 H 0.97001 * 124.88179 * 180.02562 * 25 24 23 27 27 N 1.28467 * 110.23268 * 359.73202 * 25 24 23 28 28 C 1.47580 * 91.01786 * 24.64043 * 19 18 17 29 29 H 1.09005 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47073 * 300.03573 * 1 2 3 31 31 H 1.08995 * 109.46920 * 60.03684 * 1 2 3 32 32 H 0.97002 * 120.00024 * 265.00172 * 4 2 1 33 33 H 1.09004 * 109.46855 * 299.99676 * 7 5 4 34 34 H 1.08997 * 109.47353 * 59.99351 * 7 5 4 35 35 H 0.97001 * 119.99938 * 180.02562 * 12 11 9 36 36 H 1.09003 * 112.94445 * 53.41749 * 17 2 1 37 37 H 1.08992 * 113.76791 * 336.35069 * 18 17 2 38 38 H 1.09001 * 113.76533 * 107.75262 * 18 17 2 39 39 H 1.07998 * 127.24692 * 0.02562 * 23 22 20 40 40 H 1.08003 * 126.38385 * 179.97438 * 24 23 22 41 41 H 1.08998 * 113.76840 * 221.05845 * 28 19 18 42 42 H 1.08993 * 113.87091 * 89.67159 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8584 1.1581 -2.4117 7 6 2.6491 -0.7293 -3.5875 8 16 2.7095 0.4334 -4.9734 9 6 3.3129 -0.6319 -6.2404 10 1 3.5222 -1.6683 -6.0203 11 6 3.5182 -0.1394 -7.5218 12 7 3.9685 -0.9355 -8.4685 13 14 3.1555 1.6531 -7.9027 14 1 4.3745 2.4666 -7.6628 15 1 2.7449 1.7838 -9.3238 16 1 2.0588 2.1337 -7.0244 17 6 2.0399 -0.7211 1.2494 18 6 1.9775 0.1345 2.5277 19 7 3.3097 -0.4175 2.8418 20 6 4.0080 -0.6109 3.9783 21 8 5.1191 -1.1021 3.9328 22 6 3.4234 -0.2258 5.2789 23 6 4.0305 -0.3654 6.5494 24 6 3.1287 0.1167 7.4364 25 7 2.0498 0.5191 6.7310 26 1 1.2489 0.9079 7.1160 27 7 2.2393 0.3185 5.4763 28 6 3.5701 -0.6729 1.4118 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5132 -0.8903 32 1 2.2491 -1.6320 -1.1523 33 1 3.6482 -1.1218 -3.3983 34 1 1.9763 -1.5512 -3.8323 35 1 4.1123 -0.5912 -9.3639 36 1 1.6175 -1.7191 1.3662 37 1 1.9802 1.2078 2.3385 38 1 1.1987 -0.1739 3.2252 39 1 5.0077 -0.7711 6.7659 40 1 3.2496 0.1696 8.5083 41 1 4.0627 -1.6257 1.2182 42 1 4.0407 0.1623 0.8931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001286182940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:39 Heat of formation + Delta-G solvation = 40.149875 kcal Electronic energy + Delta-G solvation = -25609.302928 eV Core-core repulsion = 21718.772610 eV Total energy + Delta-G solvation = -3890.530318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.07435 -40.72173 -39.27190 -38.00526 -35.07476 -32.46519 -32.42531 -31.67518 -31.21248 -29.25817 -28.56385 -26.46752 -25.60453 -24.77917 -22.98228 -22.09126 -20.75039 -20.40743 -19.39852 -18.81044 -17.89861 -17.31390 -16.77347 -16.49454 -16.08741 -15.99866 -15.16957 -15.08221 -14.93126 -14.39665 -14.15259 -14.03013 -13.86410 -13.61620 -13.35792 -13.18441 -12.91914 -12.82775 -12.78295 -12.32614 -12.07853 -11.86726 -11.44080 -11.26231 -11.14782 -11.03729 -10.99793 -10.59168 -10.33063 -9.92126 -9.84684 -9.68821 -9.50851 -9.06421 -8.99577 -8.95556 -8.49178 -6.90656 -6.27782 -3.99464 1.15885 1.67856 2.26509 2.57567 2.74983 2.96932 3.09123 3.26180 3.34376 3.51058 3.61767 3.86015 4.09416 4.33741 4.34280 4.42685 4.49494 4.68464 4.75165 4.84957 5.09916 5.11287 5.14994 5.18388 5.20683 5.25264 5.27255 5.33023 5.37380 5.53009 5.57507 5.77048 5.77903 5.91729 5.93959 6.03143 6.13260 6.46087 6.54837 7.28179 7.35215 7.60710 7.86685 7.95229 8.43004 8.49081 9.18404 10.81427 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.001900 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.871728 B =14736.667001 C =15166.354749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.092 0.908 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.519 6.519 7 C -0.125 4.125 8 S -0.142 6.142 9 C -0.521 4.521 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.235 1.235 17 C -0.135 4.135 18 C 0.124 3.876 19 N -0.634 5.634 20 C 0.624 3.376 21 O -0.531 6.531 22 C -0.008 4.008 23 C -0.180 4.180 24 C -0.015 4.015 25 N -0.384 5.384 26 H 0.447 0.553 27 N -0.255 5.255 28 C 0.117 3.883 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.164 0.836 40 H 0.186 0.814 41 H 0.087 0.913 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 0.403 33.658 34.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 H 0.110 0.890 4 N -0.387 5.387 5 C 0.319 3.681 6 O -0.393 6.393 7 C -0.276 4.276 8 S 0.084 5.916 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.517 5.517 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.159 1.159 17 C -0.154 4.154 18 C 0.001 3.999 19 N -0.369 5.369 20 C 0.411 3.589 21 O -0.406 6.406 22 C -0.169 4.169 23 C -0.208 4.208 24 C -0.159 4.159 25 N -0.098 5.098 26 H 0.291 0.709 27 N -0.092 5.092 28 C -0.005 4.005 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.234 0.766 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.181 0.819 40 H 0.203 0.797 41 H 0.105 0.895 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.818 2.389 32.948 33.947 hybrid contribution 0.697 -1.215 0.445 1.470 sum -7.120 1.174 33.394 34.164 Atomic orbital electron populations 1.22169 0.94868 1.02297 1.02804 1.20833 0.94382 0.97252 0.82654 0.88966 1.46008 1.69245 1.14072 1.09331 1.20268 0.76808 0.87197 0.83799 1.90697 1.48452 1.15760 1.84414 1.23290 1.04526 1.03471 0.96263 1.84774 1.87170 1.16862 1.02777 1.22321 1.50404 0.98807 0.95375 0.89380 1.24717 0.93378 0.98264 0.94965 1.69940 1.43384 1.35794 1.02561 0.86735 0.81100 0.84881 0.79122 1.19220 1.19978 1.15932 1.23538 0.96144 1.01143 0.94590 1.23198 0.84361 0.98662 0.93725 1.49754 1.19365 1.62036 1.05776 1.16490 0.83451 0.78056 0.80867 1.90823 1.18685 1.45014 1.86080 1.21906 0.93066 1.06727 0.95216 1.21842 1.02107 1.06515 0.90327 1.22974 0.88713 1.04408 0.99804 1.43418 1.16570 1.45988 1.03839 0.70868 1.73587 1.19015 1.17331 0.99281 1.23256 0.95867 1.02844 0.78559 0.92356 0.91739 0.91484 0.76626 0.88464 0.88469 0.91958 0.87277 0.89202 0.88975 0.81879 0.79672 0.89468 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.44 37.16 0.35 -1.09 16 2 C 0.15 1.45 2.29 -67.93 -0.16 1.29 16 3 H 0.09 1.03 7.48 -51.93 -0.39 0.64 16 4 N -0.73 -8.21 4.94 -53.80 -0.27 -8.47 16 5 C 0.53 8.82 7.81 -10.98 -0.09 8.73 16 6 O -0.52 -10.54 15.52 5.56 0.09 -10.46 16 7 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 8 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 9 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 10 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 11 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 12 N -0.88 -26.55 13.97 55.49 0.78 -25.77 16 13 Si 0.86 21.75 27.74 -169.99 -4.72 17.03 16 14 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 17 C -0.13 -0.98 3.36 -89.69 -0.30 -1.28 16 18 C 0.12 0.93 7.37 -2.97 -0.02 0.90 16 19 N -0.63 -6.51 3.61 -179.53 -0.65 -7.16 16 20 C 0.62 7.78 8.06 -12.39 -0.10 7.68 16 21 O -0.53 -8.36 17.65 5.31 0.09 -8.26 16 22 C -0.01 -0.08 7.09 -82.77 -0.59 -0.67 16 23 C -0.18 -1.44 10.81 -39.36 -0.43 -1.86 16 24 C -0.01 -0.07 12.02 -17.17 -0.21 -0.27 16 25 N -0.38 -1.77 6.83 30.47 0.21 -1.56 16 26 H 0.45 0.33 8.96 -190.44 -1.71 -1.37 16 27 N -0.26 -2.08 10.65 33.42 0.36 -1.72 16 28 C 0.12 1.07 8.27 -2.97 -0.02 1.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.40 3.44 8.60 -40.82 -0.35 3.09 16 33 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 34 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 38 H 0.09 0.62 7.52 -51.93 -0.39 0.23 16 39 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.19 0.07 8.06 -52.48 -0.42 -0.35 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -38.64 376.71 -8.60 -47.24 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.05 Total: -1.42 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.12 Total: 0.44 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.43 Total: -44.69 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.18 Total: -18.72 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.03 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.64 -8.60 -47.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286182940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.385 kcal (2) G-P(sol) polarization free energy of solvation -38.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds