Wall clock time and date at job start Tue Mar 31 2020 20:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47130 * 2 1 4 4 N 1.46500 * 109.47432 * 239.98979 * 2 1 3 5 5 C 1.34772 * 119.99342 * 85.00429 * 4 2 1 6 6 O 1.21276 * 120.00414 * 359.97438 * 5 4 2 7 7 C 1.50711 * 119.99472 * 180.02562 * 5 4 2 8 8 S 1.81000 * 109.46969 * 179.97438 * 7 5 4 9 9 C 1.76191 * 99.99901 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00032 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00331 * 179.97438 * 9 8 7 12 12 N 1.31631 * 120.00314 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 119.99469 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47368 * 90.00081 * 13 11 9 15 15 H 1.48505 * 109.46935 * 209.99828 * 13 11 9 16 16 H 1.48499 * 109.47352 * 329.99688 * 13 11 9 17 17 C 1.53006 * 109.46728 * 119.99118 * 2 1 3 18 18 C 1.53948 * 113.74258 * 281.68031 * 17 2 1 19 19 N 1.47585 * 86.11404 * 222.04912 * 18 17 2 20 20 C 1.34779 * 134.48732 * 204.64367 * 19 18 17 21 21 O 1.21567 * 119.99788 * 179.97438 * 20 19 18 22 22 C 1.47705 * 120.00147 * 359.97438 * 20 19 18 23 23 C 1.41505 * 126.51803 * 180.02562 * 22 20 19 24 24 C 1.35367 * 105.50519 * 180.02562 * 23 22 20 25 25 N 1.35032 * 107.22627 * 359.97438 * 24 23 22 26 26 H 0.97001 * 124.88179 * 180.02562 * 25 24 23 27 27 N 1.28467 * 110.23268 * 359.73202 * 25 24 23 28 28 C 1.47580 * 91.01786 * 24.64043 * 19 18 17 29 29 H 1.09005 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47073 * 300.03573 * 1 2 3 31 31 H 1.08995 * 109.46920 * 60.03684 * 1 2 3 32 32 H 0.97002 * 120.00024 * 265.00172 * 4 2 1 33 33 H 1.09004 * 109.46855 * 299.99676 * 7 5 4 34 34 H 1.08997 * 109.47353 * 59.99351 * 7 5 4 35 35 H 0.97001 * 119.99938 * 180.02562 * 12 11 9 36 36 H 1.09003 * 112.94445 * 53.41749 * 17 2 1 37 37 H 1.08992 * 113.76791 * 336.35069 * 18 17 2 38 38 H 1.09001 * 113.76533 * 107.75262 * 18 17 2 39 39 H 1.07998 * 127.24692 * 0.02562 * 23 22 20 40 40 H 1.08003 * 126.38385 * 179.97438 * 24 23 22 41 41 H 1.08998 * 113.76840 * 221.05845 * 28 19 18 42 42 H 1.08993 * 113.87091 * 89.67159 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8584 1.1581 -2.4117 7 6 2.6491 -0.7293 -3.5875 8 16 2.7095 0.4334 -4.9734 9 6 3.3129 -0.6319 -6.2404 10 1 3.5222 -1.6683 -6.0203 11 6 3.5182 -0.1394 -7.5218 12 7 3.9685 -0.9355 -8.4685 13 14 3.1555 1.6531 -7.9027 14 1 4.3745 2.4666 -7.6628 15 1 2.7449 1.7838 -9.3238 16 1 2.0588 2.1337 -7.0244 17 6 2.0399 -0.7211 1.2494 18 6 1.9775 0.1345 2.5277 19 7 3.3097 -0.4175 2.8418 20 6 4.0080 -0.6109 3.9783 21 8 5.1191 -1.1021 3.9328 22 6 3.4234 -0.2258 5.2789 23 6 4.0305 -0.3654 6.5494 24 6 3.1287 0.1167 7.4364 25 7 2.0498 0.5191 6.7310 26 1 1.2489 0.9079 7.1160 27 7 2.2393 0.3185 5.4763 28 6 3.5701 -0.6729 1.4118 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5132 -0.8903 32 1 2.2491 -1.6320 -1.1523 33 1 3.6482 -1.1218 -3.3983 34 1 1.9763 -1.5512 -3.8323 35 1 4.1123 -0.5912 -9.3639 36 1 1.6175 -1.7191 1.3662 37 1 1.9802 1.2078 2.3385 38 1 1.1987 -0.1739 3.2252 39 1 5.0077 -0.7711 6.7659 40 1 3.2496 0.1696 8.5083 41 1 4.0627 -1.6257 1.2182 42 1 4.0407 0.1623 0.8931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001286182940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:38 Heat of formation + Delta-G solvation = 10.116632 kcal Electronic energy + Delta-G solvation = -25610.605267 eV Core-core repulsion = 21718.772610 eV Total energy + Delta-G solvation = -3891.832657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.57792 -41.55411 -40.46230 -38.96963 -36.13639 -34.65776 -33.14741 -32.64283 -31.76906 -30.32366 -29.56327 -27.83933 -27.16813 -25.53779 -23.73337 -22.58618 -21.64646 -21.52859 -20.04594 -19.82760 -19.33270 -18.12927 -17.79707 -17.70579 -17.08926 -16.88086 -16.75184 -16.40216 -16.02491 -15.72475 -15.18353 -14.97020 -14.79104 -14.63046 -14.52507 -14.32390 -13.95408 -13.84163 -13.61887 -13.33230 -13.24374 -13.04777 -12.98825 -12.80413 -12.54145 -12.08445 -11.89580 -11.83960 -11.74866 -11.26457 -11.15917 -10.89044 -10.51113 -10.49865 -10.16825 -10.09583 -9.79268 -8.96943 -8.50239 -6.20432 0.47935 1.01461 1.21468 1.32447 1.47921 1.57204 1.62270 1.63401 2.14641 2.21963 2.26753 2.31070 2.73269 2.88052 3.21835 3.35041 3.68922 3.79755 3.95108 4.04213 4.14300 4.14822 4.28092 4.42841 4.45424 4.51656 4.52075 4.58082 4.63034 4.72991 4.76258 4.84713 4.89391 5.04864 5.20359 5.33989 5.39634 5.54540 5.71957 6.12918 6.16667 6.51565 6.54063 6.77380 6.95070 7.05155 7.26359 8.62122 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.001900 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.871728 B =14736.667001 C =15166.354749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.076 0.924 4 N -0.708 5.708 5 C 0.539 3.461 6 O -0.560 6.560 7 C -0.113 4.113 8 S -0.175 6.175 9 C -0.529 4.529 10 H 0.062 0.938 11 C 0.044 3.956 12 N -0.918 5.918 13 Si 0.915 3.085 14 H -0.263 1.263 15 H -0.260 1.260 16 H -0.235 1.235 17 C -0.110 4.110 18 C 0.129 3.871 19 N -0.637 5.637 20 C 0.614 3.386 21 O -0.581 6.581 22 C -0.042 4.042 23 C -0.213 4.213 24 C 0.016 3.984 25 N -0.366 5.366 26 H 0.465 0.535 27 N -0.263 5.263 28 C 0.106 3.894 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.416 0.584 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.276 0.724 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.159 0.841 40 H 0.232 0.768 41 H 0.087 0.913 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 0.889 36.571 37.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.094 0.906 4 N -0.362 5.362 5 C 0.325 3.675 6 O -0.438 6.438 7 C -0.264 4.264 8 S 0.051 5.949 9 C -0.677 4.677 10 H 0.080 0.920 11 C -0.161 4.161 12 N -0.556 5.556 13 Si 0.737 3.263 14 H -0.188 1.188 15 H -0.184 1.184 16 H -0.159 1.159 17 C -0.129 4.129 18 C 0.007 3.993 19 N -0.371 5.371 20 C 0.403 3.597 21 O -0.459 6.459 22 C -0.201 4.201 23 C -0.241 4.241 24 C -0.129 4.129 25 N -0.083 5.083 26 H 0.314 0.686 27 N -0.101 5.101 28 C -0.016 4.016 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.253 0.747 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.176 0.824 40 H 0.249 0.751 41 H 0.105 0.895 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.808 2.851 35.883 37.308 hybrid contribution 1.267 -1.444 -0.258 1.938 sum -8.541 1.407 35.625 36.662 Atomic orbital electron populations 1.22128 0.93692 1.03269 1.02552 1.20940 0.95140 0.96515 0.82261 0.90606 1.45788 1.67387 1.14713 1.08269 1.19847 0.76730 0.86534 0.84428 1.90689 1.50674 1.17378 1.85075 1.23298 1.06135 1.02290 0.94698 1.84677 1.86926 1.18756 1.04536 1.22483 1.50096 0.98290 0.96806 0.92021 1.25579 0.93282 1.02268 0.94952 1.70021 1.44588 1.37732 1.03217 0.85859 0.80980 0.79961 0.79514 1.18822 1.18412 1.15926 1.23389 0.94344 1.01905 0.93260 1.23324 0.83364 0.98955 0.93665 1.49903 1.20166 1.61410 1.05605 1.16942 0.83087 0.77491 0.82150 1.90773 1.20757 1.47435 1.86978 1.21758 0.94465 1.09002 0.94873 1.22051 1.03117 1.08431 0.90510 1.23540 0.86943 1.01189 1.01202 1.43560 1.17293 1.44483 1.02950 0.68588 1.73488 1.18161 1.17442 1.01031 1.23361 0.97335 1.02539 0.78398 0.90751 0.89340 0.94418 0.74684 0.87034 0.86859 0.91425 0.85065 0.88706 0.87468 0.82376 0.75118 0.89499 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.44 71.98 0.68 -1.70 16 2 C 0.16 2.62 2.29 44.99 0.10 2.72 16 3 H 0.08 1.61 7.48 -2.39 -0.02 1.59 16 4 N -0.71 -14.48 4.94 -442.52 -2.19 -16.67 16 5 C 0.54 17.25 7.81 87.66 0.68 17.94 16 6 O -0.56 -22.57 15.52 -3.02 -0.05 -22.62 16 7 C -0.11 -4.12 6.16 71.24 0.44 -3.69 16 8 S -0.18 -8.78 18.55 -56.49 -1.05 -9.82 16 9 C -0.53 -30.81 10.04 67.95 0.68 -30.13 16 10 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 11 C 0.04 2.62 5.50 84.86 0.47 3.08 16 12 N -0.92 -56.11 13.97 21.65 0.30 -55.81 16 13 Si 0.91 45.12 27.74 68.60 1.90 47.03 16 14 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.24 -11.53 6.74 99.48 0.67 -10.86 16 17 C -0.11 -1.33 3.36 -10.13 -0.03 -1.37 16 18 C 0.13 1.67 7.37 86.48 0.64 2.31 16 19 N -0.64 -12.75 3.61 -840.18 -3.03 -15.78 16 20 C 0.61 15.68 8.06 86.74 0.70 16.38 16 21 O -0.58 -19.28 17.65 -3.93 -0.07 -19.35 16 22 C -0.04 -0.83 7.09 42.46 0.30 -0.53 16 23 C -0.21 -3.22 10.81 22.41 0.24 -2.98 16 24 C 0.02 0.09 12.02 83.54 1.00 1.10 16 25 N -0.37 -2.23 6.83 -57.51 -0.39 -2.62 16 26 H 0.47 -1.07 8.96 -219.99 -1.97 -3.04 16 27 N -0.26 -3.77 10.65 -48.18 -0.51 -4.28 16 28 C 0.11 1.87 8.27 86.48 0.72 2.59 16 29 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.09 0.93 8.09 -2.39 -0.02 0.91 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.42 6.03 8.60 -92.71 -0.80 5.23 16 33 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 35 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.17 8.03 -2.39 -0.02 1.15 16 38 H 0.11 1.12 7.52 -2.39 -0.02 1.10 16 39 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 40 H 0.23 -0.97 8.06 -2.91 -0.02 -0.99 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -87.82 376.71 -0.20 -88.02 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -1.74 Total: 6.20 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.62 Total: 5.71 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -5.82 Total: -95.16 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.12 Total: -41.97 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.03 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.82 kcal Total: -87.82 -0.20 -88.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286182940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.141 kcal (2) G-P(sol) polarization free energy of solvation -87.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds