Wall clock time and date at job start Tue Mar 31 2020 20:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46644 * 2 1 4 4 C 1.53005 * 109.47078 * 240.00683 * 2 1 3 5 5 N 1.46506 * 109.46762 * 184.99534 * 4 2 1 6 6 C 1.46501 * 119.99672 * 269.99581 * 5 4 2 7 7 C 1.34771 * 119.99944 * 89.99944 * 5 4 2 8 8 O 1.21283 * 120.00264 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00269 * 179.97438 * 7 5 4 10 10 S 1.80992 * 109.47492 * 179.97438 * 9 7 5 11 11 C 1.76204 * 100.00088 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00216 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99872 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00275 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99722 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46892 * 60.00263 * 15 13 11 17 17 H 1.48504 * 109.47123 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47450 * 299.99775 * 15 13 11 19 19 N 1.46500 * 109.47744 * 119.99965 * 2 1 3 20 20 C 1.34772 * 119.99977 * 275.00581 * 19 2 1 21 21 O 1.21477 * 120.00278 * 359.97438 * 20 19 2 22 22 C 1.48460 * 119.99988 * 179.97438 * 20 19 2 23 23 C 1.39531 * 120.54934 * 179.97438 * 22 20 19 24 24 C 1.38767 * 118.26048 * 180.02562 * 23 22 20 25 25 N 1.32197 * 119.14738 * 0.02562 * 24 23 22 26 26 C 1.31888 * 121.03994 * 359.97438 * 25 24 23 27 27 N 1.31584 * 121.91236 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47326 * 299.99176 * 1 2 3 29 29 H 1.08997 * 109.47444 * 60.00204 * 1 2 3 30 30 H 1.09009 * 109.46644 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46937 * 304.99214 * 4 2 1 32 32 H 1.08993 * 109.47401 * 64.99572 * 4 2 1 33 33 H 1.09003 * 109.46782 * 90.00457 * 6 5 4 34 34 H 1.09006 * 109.46620 * 210.00254 * 6 5 4 35 35 H 1.09000 * 109.47357 * 330.00159 * 6 5 4 36 36 H 1.08999 * 109.47294 * 300.00384 * 9 7 5 37 37 H 1.09003 * 109.46837 * 59.99699 * 9 7 5 38 38 H 0.97001 * 119.99829 * 179.97438 * 14 13 11 39 39 H 0.97000 * 119.99535 * 94.99776 * 19 2 1 40 40 H 1.07998 * 120.86993 * 0.04274 * 23 22 20 41 41 H 1.07998 * 120.42251 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.04225 * 180.28788 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5001 -0.8261 -1.1907 6 6 4.3342 0.2344 -1.7614 7 6 4.0758 -1.8984 -0.6118 8 8 3.3853 -2.7762 -0.1390 9 6 5.5777 -2.0067 -0.5519 10 16 6.0389 -3.5466 0.2800 11 6 7.7949 -3.4168 0.2124 12 1 8.2554 -2.5571 -0.2515 13 6 8.5862 -4.4200 0.7545 14 7 8.0250 -5.4681 1.3195 15 14 10.4478 -4.2828 0.6822 16 1 10.8819 -3.0567 1.3989 17 1 11.0574 -5.4740 1.3262 18 1 10.8841 -4.2083 -0.7353 19 7 2.0185 -0.6906 1.1961 20 6 2.1471 -0.0183 2.3571 21 8 1.8585 1.1605 2.4116 22 6 2.6416 -0.7182 3.5693 23 6 2.7797 -0.0332 4.7770 24 6 3.2466 -0.7338 5.8801 25 7 3.5427 -2.0156 5.7506 26 6 3.4005 -2.6330 4.5939 27 7 2.9614 -2.0091 3.5218 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6055 -1.7197 -1.2953 32 1 1.7516 -0.1582 -2.1370 33 1 4.5398 0.9852 -0.9983 34 1 5.2734 -0.1921 -2.1139 35 1 3.8101 0.6992 -2.5965 36 1 5.9828 -2.0046 -1.5638 37 1 5.9812 -1.1596 0.0027 38 1 8.5781 -6.1694 1.6979 39 1 2.2491 -1.6317 1.1525 40 1 2.5296 1.0148 4.8514 41 1 3.3672 -0.2380 6.8320 42 1 3.6477 -3.6821 4.5256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001287568041.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:04 Heat of formation + Delta-G solvation = -15.593633 kcal Electronic energy + Delta-G solvation = -27254.347439 eV Core-core repulsion = 23361.399901 eV Total energy + Delta-G solvation = -3892.947538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18392 -40.06180 -39.01175 -36.27011 -34.73798 -33.90392 -32.44391 -32.10428 -31.23639 -29.50712 -27.32839 -25.80244 -25.62983 -25.19857 -24.36026 -22.11896 -20.61809 -19.43968 -18.51542 -17.68344 -17.60695 -16.70359 -16.35210 -15.92488 -15.72019 -15.48624 -15.29354 -14.96773 -14.81848 -14.32682 -14.03723 -13.92502 -13.68387 -13.54626 -13.24651 -12.96518 -12.82344 -12.56545 -12.48537 -12.29438 -11.89829 -11.82670 -11.30014 -11.06041 -11.05712 -10.94060 -10.82855 -10.78439 -10.41588 -9.83559 -9.78825 -9.48075 -9.30100 -9.15763 -9.07376 -8.60526 -8.25127 -6.50630 -6.23405 -3.93337 0.47778 0.92328 2.72538 2.81268 2.94494 3.00756 3.21774 3.24364 3.27408 3.56800 3.85014 3.96537 4.13413 4.18746 4.49828 4.62561 4.75295 4.83328 4.94539 4.96716 5.08615 5.11660 5.12826 5.24401 5.38897 5.44359 5.51172 5.52084 5.58381 5.62017 5.67081 5.82605 5.85575 6.00812 6.09303 6.25187 6.35672 6.56344 6.80348 7.40761 7.51419 7.57529 7.98103 8.13037 8.32982 8.46264 9.22193 10.83747 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009527 B = 0.004314 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.276941 B = 6488.652564 C = 8610.142945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 H 0.089 0.911 4 C 0.107 3.893 5 N -0.624 5.624 6 C 0.080 3.920 7 C 0.537 3.463 8 O -0.513 6.513 9 C -0.152 4.152 10 S -0.052 6.052 11 C -0.538 4.538 12 H 0.070 0.930 13 C 0.076 3.924 14 N -0.867 5.867 15 Si 0.916 3.084 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.274 1.274 19 N -0.695 5.695 20 C 0.571 3.429 21 O -0.538 6.538 22 C 0.127 3.873 23 C -0.177 4.177 24 C 0.145 3.855 25 N -0.506 5.506 26 C 0.306 3.694 27 N -0.477 5.477 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.269 0.731 39 H 0.426 0.574 40 H 0.157 0.843 41 H 0.174 0.826 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 12.951 -0.484 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.107 0.893 4 C -0.017 4.017 5 N -0.360 5.360 6 C -0.064 4.064 7 C 0.326 3.674 8 O -0.387 6.387 9 C -0.302 4.302 10 S 0.175 5.825 11 C -0.686 4.686 12 H 0.088 0.912 13 C -0.133 4.133 14 N -0.502 5.502 15 Si 0.742 3.258 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.351 5.351 20 C 0.355 3.645 21 O -0.415 6.415 22 C -0.021 4.021 23 C -0.200 4.200 24 C -0.023 4.023 25 N -0.220 5.220 26 C 0.018 3.982 27 N -0.193 5.193 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.269 0.731 40 H 0.174 0.826 41 H 0.191 0.809 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.162 11.320 0.187 18.131 hybrid contribution 2.100 1.675 -0.575 2.747 sum -12.062 12.995 -0.389 17.734 Atomic orbital electron populations 1.22128 0.94422 1.02711 1.02770 1.21518 0.94450 0.97814 0.84560 0.89260 1.21808 0.80667 1.02623 0.96612 1.47863 1.05892 1.22103 1.60104 1.21803 0.95880 0.90468 0.98212 1.20365 0.90402 0.80313 0.76352 1.90624 1.64320 1.38701 1.45083 1.23558 0.93498 1.07710 1.05448 1.85335 1.05348 1.17904 1.73899 1.22828 0.91296 1.09751 1.44729 0.91167 1.24951 0.99412 0.94481 0.94497 1.69997 1.35964 1.08560 1.35651 0.86272 0.83213 0.77801 0.78517 1.20003 1.20757 1.19935 1.46251 1.64390 1.16288 1.08208 1.17864 0.77896 0.85891 0.82858 1.90743 1.50955 1.14945 1.84869 1.21622 0.95356 0.90921 0.94248 1.22916 1.00225 1.03292 0.93543 1.23318 0.90374 0.89898 0.98675 1.68405 1.15032 1.10685 1.27900 1.25166 0.89642 1.01116 0.82232 1.68487 1.09987 1.08445 1.32348 0.91756 0.91285 0.91921 0.88971 0.88928 0.92826 0.90529 0.91155 0.89314 0.89597 0.92140 0.73131 0.82579 0.80902 0.77667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.12 1.40 2.88 -67.93 -0.20 1.21 16 3 H 0.09 1.06 7.58 -51.92 -0.39 0.67 16 4 C 0.11 1.14 5.19 -4.04 -0.02 1.12 16 5 N -0.62 -8.18 2.77 -181.57 -0.50 -8.68 16 6 C 0.08 0.80 10.29 59.85 0.62 1.42 16 7 C 0.54 9.54 6.99 -10.99 -0.08 9.47 16 8 O -0.51 -10.44 13.18 5.55 0.07 -10.37 16 9 C -0.15 -3.01 4.71 36.00 0.17 -2.85 16 10 S -0.05 -1.35 20.57 -107.50 -2.21 -3.56 16 11 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 12 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 13 C 0.08 2.14 5.49 -17.43 -0.10 2.04 16 14 N -0.87 -25.62 13.22 55.49 0.73 -24.89 16 15 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 N -0.69 -10.18 4.47 -54.55 -0.24 -10.42 16 20 C 0.57 8.89 7.79 -12.05 -0.09 8.80 16 21 O -0.54 -8.86 16.09 5.39 0.09 -8.77 16 22 C 0.13 1.94 6.79 -82.64 -0.56 1.38 16 23 C -0.18 -2.20 9.72 -38.90 -0.38 -2.57 16 24 C 0.14 1.65 11.31 -17.20 -0.19 1.46 16 25 N -0.51 -7.07 10.42 -14.59 -0.15 -7.22 16 26 C 0.31 4.63 12.28 -92.25 -1.13 3.49 16 27 N -0.48 -7.85 9.70 -11.14 -0.11 -7.96 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.09 1.09 7.42 -51.93 -0.39 0.70 16 32 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 35 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 36 H 0.09 1.64 7.40 -51.92 -0.38 1.25 16 37 H 0.09 1.66 8.11 -51.91 -0.42 1.24 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.43 7.07 5.21 -40.82 -0.21 6.86 16 40 H 0.16 1.64 7.74 -52.49 -0.41 1.23 16 41 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.21 2.78 8.06 -52.49 -0.42 2.35 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -35.14 374.20 -8.47 -43.60 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.44 Total: 7.42 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -1.32 Total: 8.99 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.27 Total: -59.18 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.16 Total: -19.14 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.21 Total: -3.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.14 -8.47 -43.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287568041.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.010 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds