Wall clock time and date at job start Tue Mar 31 2020 20:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46644 * 2 1 4 4 C 1.53005 * 109.47078 * 240.00683 * 2 1 3 5 5 N 1.46506 * 109.46762 * 184.99534 * 4 2 1 6 6 C 1.46501 * 119.99672 * 269.99581 * 5 4 2 7 7 C 1.34771 * 119.99944 * 89.99944 * 5 4 2 8 8 O 1.21283 * 120.00264 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00269 * 179.97438 * 7 5 4 10 10 S 1.80992 * 109.47492 * 179.97438 * 9 7 5 11 11 C 1.76204 * 100.00088 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00216 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99872 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00275 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99722 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46892 * 60.00263 * 15 13 11 17 17 H 1.48504 * 109.47123 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47450 * 299.99775 * 15 13 11 19 19 N 1.46500 * 109.47744 * 119.99965 * 2 1 3 20 20 C 1.34772 * 119.99977 * 275.00581 * 19 2 1 21 21 O 1.21477 * 120.00278 * 359.97438 * 20 19 2 22 22 C 1.48460 * 119.99988 * 179.97438 * 20 19 2 23 23 C 1.39531 * 120.54934 * 179.97438 * 22 20 19 24 24 C 1.38767 * 118.26048 * 180.02562 * 23 22 20 25 25 N 1.32197 * 119.14738 * 0.02562 * 24 23 22 26 26 C 1.31888 * 121.03994 * 359.97438 * 25 24 23 27 27 N 1.31584 * 121.91236 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47326 * 299.99176 * 1 2 3 29 29 H 1.08997 * 109.47444 * 60.00204 * 1 2 3 30 30 H 1.09009 * 109.46644 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46937 * 304.99214 * 4 2 1 32 32 H 1.08993 * 109.47401 * 64.99572 * 4 2 1 33 33 H 1.09003 * 109.46782 * 90.00457 * 6 5 4 34 34 H 1.09006 * 109.46620 * 210.00254 * 6 5 4 35 35 H 1.09000 * 109.47357 * 330.00159 * 6 5 4 36 36 H 1.08999 * 109.47294 * 300.00384 * 9 7 5 37 37 H 1.09003 * 109.46837 * 59.99699 * 9 7 5 38 38 H 0.97001 * 119.99829 * 179.97438 * 14 13 11 39 39 H 0.97000 * 119.99535 * 94.99776 * 19 2 1 40 40 H 1.07998 * 120.86993 * 0.04274 * 23 22 20 41 41 H 1.07998 * 120.42251 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.04225 * 180.28788 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5001 -0.8261 -1.1907 6 6 4.3342 0.2344 -1.7614 7 6 4.0758 -1.8984 -0.6118 8 8 3.3853 -2.7762 -0.1390 9 6 5.5777 -2.0067 -0.5519 10 16 6.0389 -3.5466 0.2800 11 6 7.7949 -3.4168 0.2124 12 1 8.2554 -2.5571 -0.2515 13 6 8.5862 -4.4200 0.7545 14 7 8.0250 -5.4681 1.3195 15 14 10.4478 -4.2828 0.6822 16 1 10.8819 -3.0567 1.3989 17 1 11.0574 -5.4740 1.3262 18 1 10.8841 -4.2083 -0.7353 19 7 2.0185 -0.6906 1.1961 20 6 2.1471 -0.0183 2.3571 21 8 1.8585 1.1605 2.4116 22 6 2.6416 -0.7182 3.5693 23 6 2.7797 -0.0332 4.7770 24 6 3.2466 -0.7338 5.8801 25 7 3.5427 -2.0156 5.7506 26 6 3.4005 -2.6330 4.5939 27 7 2.9614 -2.0091 3.5218 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6055 -1.7197 -1.2953 32 1 1.7516 -0.1582 -2.1370 33 1 4.5398 0.9852 -0.9983 34 1 5.2734 -0.1921 -2.1139 35 1 3.8101 0.6992 -2.5965 36 1 5.9828 -2.0046 -1.5638 37 1 5.9812 -1.1596 0.0027 38 1 8.5781 -6.1694 1.6979 39 1 2.2491 -1.6317 1.1525 40 1 2.5296 1.0148 4.8514 41 1 3.3672 -0.2380 6.8320 42 1 3.6477 -3.6821 4.5256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001287568041.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:03 Heat of formation + Delta-G solvation = -39.709938 kcal Electronic energy + Delta-G solvation = -27255.393200 eV Core-core repulsion = 23361.399901 eV Total energy + Delta-G solvation = -3893.993299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27132 -41.23427 -40.23176 -37.41580 -35.86693 -34.99011 -34.57821 -33.16420 -32.30972 -30.87603 -28.26279 -27.68026 -26.80847 -26.38627 -25.42882 -23.14707 -21.68687 -20.73863 -19.77161 -19.39176 -18.70638 -18.02377 -17.44628 -17.09851 -16.89624 -16.86577 -16.49795 -16.45983 -16.18892 -15.82060 -15.38986 -14.99470 -14.75529 -14.61824 -14.53451 -14.51079 -13.87934 -13.64406 -13.53400 -13.32558 -13.15737 -12.98908 -12.88339 -12.73351 -12.61038 -12.20350 -11.99432 -11.95352 -11.73227 -11.57261 -11.13153 -10.89189 -10.83951 -10.40178 -10.25429 -10.24626 -9.68895 -8.62245 -8.34191 -6.10114 -0.62576 -0.09807 1.25657 1.41214 1.44312 1.52354 1.54548 1.59851 1.90187 2.14855 2.27516 2.75227 2.87038 2.99563 3.14076 3.27423 3.51555 3.70641 3.74784 3.78855 4.00112 4.09620 4.17213 4.20957 4.33412 4.44124 4.48401 4.50270 4.59102 4.63947 4.69848 4.78892 4.91037 4.95524 5.21047 5.22249 5.34642 5.40949 5.56045 5.75801 6.18759 6.22525 6.32961 6.85553 6.98521 7.07321 7.14845 8.74139 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009527 B = 0.004314 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.276941 B = 6488.652564 C = 8610.142945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.118 3.882 3 H 0.090 0.910 4 C 0.107 3.893 5 N -0.612 5.612 6 C 0.071 3.929 7 C 0.534 3.466 8 O -0.547 6.547 9 C -0.129 4.129 10 S -0.127 6.127 11 C -0.552 4.552 12 H 0.076 0.924 13 C 0.020 3.980 14 N -0.906 5.906 15 Si 0.990 3.010 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.262 1.262 19 N -0.699 5.699 20 C 0.567 3.433 21 O -0.553 6.553 22 C 0.099 3.901 23 C -0.167 4.167 24 C 0.154 3.846 25 N -0.517 5.517 26 C 0.290 3.710 27 N -0.506 5.506 28 H 0.048 0.952 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.271 0.729 39 H 0.417 0.583 40 H 0.178 0.822 41 H 0.221 0.779 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.989 15.540 -1.383 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.013 3.987 3 H 0.108 0.892 4 C -0.016 4.016 5 N -0.345 5.345 6 C -0.071 4.071 7 C 0.322 3.678 8 O -0.424 6.424 9 C -0.280 4.280 10 S 0.101 5.899 11 C -0.700 4.700 12 H 0.094 0.906 13 C -0.186 4.186 14 N -0.542 5.542 15 Si 0.812 3.188 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.187 1.187 19 N -0.353 5.353 20 C 0.351 3.649 21 O -0.431 6.431 22 C -0.048 4.048 23 C -0.190 4.190 24 C -0.013 4.013 25 N -0.231 5.231 26 C 0.002 3.998 27 N -0.223 5.223 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.158 0.842 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.257 0.743 40 H 0.196 0.804 41 H 0.237 0.763 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -13.979 13.959 -0.761 19.770 hybrid contribution 1.940 0.991 -0.315 2.202 sum -12.039 14.950 -1.076 19.225 Atomic orbital electron populations 1.22071 0.92700 1.02799 1.03640 1.21771 0.95813 0.97466 0.83647 0.89185 1.22071 0.78675 1.02751 0.98068 1.47839 1.07378 1.21058 1.58272 1.22087 0.95972 0.89510 0.99492 1.20013 0.89260 0.81511 0.77012 1.90620 1.64510 1.40453 1.46859 1.23379 0.95734 1.03673 1.05206 1.85441 1.05748 1.23075 1.75685 1.23166 0.91894 1.10126 1.44818 0.90591 1.25999 1.04848 0.93912 0.93812 1.70153 1.37968 1.09478 1.36649 0.85126 0.76462 0.78083 0.79105 1.19082 1.20203 1.18657 1.46450 1.63943 1.15881 1.09036 1.17997 0.77830 0.85821 0.83288 1.90714 1.51984 1.15259 1.85188 1.21854 0.96529 0.90981 0.95418 1.23221 0.98933 1.04153 0.92676 1.24101 0.88230 0.88893 1.00084 1.68463 1.15424 1.12042 1.27157 1.25258 0.90320 1.01535 0.82677 1.68423 1.11222 1.09461 1.33186 0.93252 0.87972 0.92230 0.90209 0.84155 0.92604 0.90856 0.87070 0.87744 0.89141 0.92001 0.74250 0.80422 0.76266 0.77622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.48 71.98 0.68 -1.93 16 2 C 0.12 2.52 2.88 44.99 0.13 2.65 16 3 H 0.09 1.94 7.58 -2.38 -0.02 1.92 16 4 C 0.11 2.03 5.19 86.38 0.45 2.47 16 5 N -0.61 -14.93 2.77 -846.74 -2.35 -17.27 16 6 C 0.07 1.21 10.29 127.77 1.31 2.53 16 7 C 0.53 18.99 6.99 87.66 0.61 19.60 16 8 O -0.55 -23.01 13.18 -3.04 -0.04 -23.05 16 9 C -0.13 -5.15 4.71 71.23 0.34 -4.81 16 10 S -0.13 -6.89 20.57 -56.49 -1.16 -8.05 16 11 C -0.55 -31.46 9.50 67.95 0.65 -30.82 16 12 H 0.08 4.07 7.80 -2.91 -0.02 4.05 16 13 C 0.02 1.11 5.49 84.86 0.47 1.58 16 14 N -0.91 -54.95 13.22 21.65 0.29 -54.67 16 15 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 N -0.70 -20.61 4.47 -444.81 -1.99 -22.60 16 20 C 0.57 17.80 7.79 86.97 0.68 18.48 16 21 O -0.55 -17.95 16.09 -3.64 -0.06 -18.01 16 22 C 0.10 3.09 6.79 41.99 0.29 3.38 16 23 C -0.17 -3.99 9.72 22.71 0.22 -3.77 16 24 C 0.15 3.28 11.31 84.76 0.96 4.23 16 25 N -0.52 -14.40 10.42 -200.09 -2.09 -16.48 16 26 C 0.29 9.23 12.28 180.92 2.22 11.45 16 27 N -0.51 -17.56 9.70 -189.15 -1.84 -19.40 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 31 H 0.08 1.78 7.42 -2.39 -0.02 1.77 16 32 H 0.14 1.36 7.89 -2.39 -0.02 1.34 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.32 6.44 -2.38 -0.02 1.31 16 35 H 0.11 1.03 7.89 -2.39 -0.02 1.01 16 36 H 0.10 3.80 7.40 -2.40 -0.02 3.78 16 37 H 0.09 3.50 8.11 -2.39 -0.02 3.48 16 38 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.42 14.34 5.21 -92.71 -0.48 13.86 16 40 H 0.18 3.39 7.74 -2.91 -0.02 3.37 16 41 H 0.22 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.21 6.14 8.06 -2.91 -0.02 6.12 16 Total: -1.00 -80.20 374.20 2.36 -77.84 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.57 Total: 31.08 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 9.00 Total: 25.03 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -7.97 Total: -130.43 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.10 Total: -41.05 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -6.89 SS G_CDS: -1.16 Total: -8.05 kcal Total: -80.20 2.36 -77.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287568041.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.126 kcal (2) G-P(sol) polarization free energy of solvation -80.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds