Wall clock time and date at job start Tue Mar 31 2020 21:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46505 * 109.47578 * 174.99814 * 4 2 1 6 6 C 1.34776 * 120.00162 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99923 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99815 * 180.02562 * 6 5 4 9 9 S 1.80994 * 109.46893 * 179.97438 * 8 6 5 10 10 C 1.76194 * 100.00102 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99835 * 0.02562 * 10 9 8 12 12 C 1.38803 * 120.00287 * 180.02562 * 10 9 8 13 13 N 1.31624 * 119.99715 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99996 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47310 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47103 * 120.00073 * 14 12 10 17 17 H 1.48494 * 109.47417 * 239.99958 * 14 12 10 18 18 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 19 19 C 1.34777 * 120.00033 * 84.99600 * 18 2 1 20 20 O 1.21287 * 119.99681 * 0.02562 * 19 18 2 21 21 C 1.50696 * 120.00198 * 180.02562 * 19 18 2 22 22 C 1.50700 * 109.47251 * 180.02562 * 21 19 18 23 23 C 1.38604 * 120.79775 * 269.72481 * 22 21 19 24 24 N 1.32333 * 119.10106 * 179.72050 * 23 22 21 25 25 C 1.31798 * 120.81644 * 0.56654 * 24 23 22 26 26 N 1.31795 * 121.75812 * 359.70494 * 25 24 23 27 27 C 1.32332 * 120.81415 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 33 33 H 0.96998 * 119.99536 * 0.02562 * 5 4 2 34 34 H 1.08991 * 109.46751 * 299.99574 * 8 6 5 35 35 H 1.09002 * 109.47083 * 60.00009 * 8 6 5 36 36 H 0.97003 * 119.99747 * 180.02562 * 13 12 10 37 37 H 0.96992 * 120.00062 * 265.00053 * 18 2 1 38 38 H 1.08997 * 109.47364 * 300.00354 * 21 19 18 39 39 H 1.09001 * 109.46822 * 60.00123 * 21 19 18 40 40 H 1.07997 * 120.44902 * 359.97438 * 23 22 21 41 41 H 1.08003 * 119.12298 * 179.73458 * 25 24 23 42 42 H 1.08005 * 120.44687 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4292 2.1905 7 8 3.5700 -1.8842 3.1393 8 6 5.6751 -1.5369 2.1304 9 16 6.2784 -2.3902 3.6081 10 6 8.0101 -2.3774 3.2833 11 1 8.3864 -1.9241 2.3781 12 6 8.8907 -2.9499 4.1907 13 7 8.4321 -3.5028 5.2936 14 14 10.7265 -2.9369 3.8459 15 1 10.9818 -2.2605 2.5487 16 1 11.4289 -2.2061 4.9313 17 1 11.2285 -4.3331 3.7839 18 7 2.0184 -0.6906 -1.1962 19 6 2.1470 -0.0182 -2.3572 20 8 1.8589 1.1587 -2.4114 21 6 2.6488 -0.7286 -3.5878 22 6 2.7002 0.2400 -4.7412 23 6 1.6079 0.4052 -5.5783 24 7 1.6877 1.2690 -6.5776 25 6 2.7912 1.9585 -6.7876 26 7 3.8510 1.8235 -6.0158 27 6 3.8425 0.9831 -4.9936 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7198 1.2950 33 1 3.9825 -0.4622 0.4318 34 1 5.9637 -2.0991 1.2424 35 1 6.1094 -0.5381 2.0852 36 1 9.0475 -3.9025 5.9279 37 1 2.2491 -1.6316 -1.1527 38 1 3.6479 -1.1211 -3.3988 39 1 1.9759 -1.5504 -3.8327 40 1 0.7025 -0.1603 -5.4147 41 1 2.8278 2.6530 -7.6139 42 1 4.7144 0.8769 -4.3652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295425410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:12 Heat of formation + Delta-G solvation = -32.304691 kcal Electronic energy + Delta-G solvation = -25354.058475 eV Core-core repulsion = 21460.386291 eV Total energy + Delta-G solvation = -3893.672184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51446 -40.27712 -39.17574 -36.68564 -34.23002 -34.07772 -33.78802 -32.47513 -31.65007 -29.50182 -28.57537 -26.10047 -25.43494 -25.01237 -23.97195 -21.81990 -20.88366 -20.44254 -18.13709 -18.03798 -17.99040 -17.61222 -16.97423 -16.35228 -15.90945 -15.51671 -15.31770 -15.05199 -14.84667 -14.79022 -14.12812 -14.10371 -14.02199 -13.96975 -13.54871 -13.29782 -13.11641 -12.99199 -12.65313 -12.53681 -12.29286 -11.88710 -11.41450 -11.34092 -11.20035 -11.10651 -11.06833 -10.79749 -10.48082 -9.85997 -9.80941 -9.65031 -9.60583 -9.48881 -9.13048 -9.04249 -8.29306 -6.55685 -6.26476 -3.97420 0.43746 0.69665 2.15460 2.63504 2.94511 2.99425 3.18376 3.24820 3.28956 3.41263 3.62599 3.73822 3.82251 4.04354 4.15767 4.17169 4.24512 4.27372 4.46008 4.73028 4.83575 4.87863 4.98410 5.06105 5.07251 5.09033 5.25278 5.31073 5.40711 5.45204 5.58386 5.67447 5.80452 5.82020 5.96150 6.02543 6.06164 6.44742 6.53373 7.00353 7.54605 7.56422 7.67105 7.74441 8.30702 8.48873 9.19192 10.80966 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012550 B = 0.002158 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.474323 B =12974.713303 C =14925.238314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.725 5.725 19 C 0.516 3.484 20 O -0.532 6.532 21 C -0.096 4.096 22 C -0.172 4.172 23 C 0.161 3.839 24 N -0.520 5.520 25 C 0.291 3.709 26 N -0.518 5.518 27 C 0.163 3.837 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.405 0.595 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.165 0.835 41 H 0.196 0.804 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 5.910 -21.400 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.396 5.396 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.378 5.378 19 C 0.302 3.698 20 O -0.408 6.408 21 C -0.137 4.137 22 C -0.176 4.176 23 C -0.005 4.005 24 N -0.233 5.233 25 C 0.003 3.997 26 N -0.231 5.231 27 C -0.003 4.003 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.240 0.760 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.182 0.818 41 H 0.212 0.788 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.286 6.572 -20.439 26.948 hybrid contribution 2.157 -0.337 -0.864 2.348 sum -14.129 6.235 -21.303 26.312 Atomic orbital electron populations 1.22101 0.93946 1.02731 1.03146 1.21264 0.95007 0.97853 0.83188 0.88623 1.21615 0.81182 1.01349 0.97032 1.45996 1.06749 1.62100 1.24722 1.20336 0.89548 0.76715 0.81582 1.90715 1.69854 1.45942 1.32391 1.23528 0.93426 1.05743 1.07727 1.85410 1.04724 1.72973 1.20224 1.22896 0.91460 1.44280 1.09731 0.90872 1.25000 0.99648 0.94521 0.94456 1.70022 1.35354 1.35431 1.09422 0.86111 0.82912 0.78003 0.78433 1.19607 1.20544 1.20548 1.46129 1.67690 1.14471 1.09555 1.20466 0.77692 0.87362 0.84290 1.90765 1.49298 1.15862 1.84850 1.20542 1.05172 0.97564 0.90432 1.21053 0.97027 1.00878 0.98648 1.23077 0.97044 0.92023 0.88314 1.68438 1.27661 1.07279 1.19913 1.25007 0.83641 0.94538 0.96487 1.68455 1.30465 1.18479 1.05662 1.23140 0.97011 0.87995 0.92115 0.90993 0.91923 0.91661 0.89927 0.90828 0.76782 0.89247 0.89221 0.92198 0.76001 0.86852 0.87062 0.81794 0.78752 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.13 0.96 2.73 -67.93 -0.19 0.78 16 3 H 0.10 0.86 7.58 -51.93 -0.39 0.46 16 4 C 0.11 1.05 5.23 -4.04 -0.02 1.03 16 5 N -0.74 -8.38 5.39 -60.29 -0.32 -8.71 16 6 C 0.53 9.05 7.85 -10.98 -0.09 8.97 16 7 O -0.52 -10.93 15.86 5.56 0.09 -10.84 16 8 C -0.15 -2.90 6.16 36.01 0.22 -2.68 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 13 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 14 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 N -0.73 -4.21 4.52 -53.81 -0.24 -4.45 16 19 C 0.52 3.68 7.79 -10.99 -0.09 3.59 16 20 O -0.53 -6.14 15.70 5.55 0.09 -6.05 16 21 C -0.10 -0.40 5.88 -29.04 -0.17 -0.57 16 22 C -0.17 -1.19 4.41 -104.36 -0.46 -1.65 16 23 C 0.16 1.23 11.01 -17.20 -0.19 1.04 16 24 N -0.52 -4.80 10.44 -14.58 -0.15 -4.95 16 25 C 0.29 2.52 12.29 -92.15 -1.13 1.39 16 26 N -0.52 -4.98 10.44 -14.58 -0.15 -5.13 16 27 C 0.16 1.32 11.01 -17.20 -0.19 1.13 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.40 3.62 8.14 -40.82 -0.33 3.29 16 34 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 35 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.41 1.63 8.60 -40.82 -0.35 1.28 16 38 H 0.11 0.25 8.10 -51.93 -0.42 -0.17 16 39 H 0.11 0.19 8.10 -51.93 -0.42 -0.23 16 40 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.20 1.09 8.06 -52.48 -0.42 0.66 16 42 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -38.16 383.64 -8.86 -47.02 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.69 Total: 0.40 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.75 Total: -0.30 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.14 Total: -48.19 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.18 Total: -16.89 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.16 -8.86 -47.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295425410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.714 kcal (2) G-P(sol) polarization free energy of solvation -38.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds