Wall clock time and date at job start Tue Mar 31 2020 20:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47196 * 2 1 4 4 C 1.52998 * 109.47702 * 120.00290 * 2 1 3 5 5 C 1.50693 * 109.47789 * 184.99813 * 4 2 1 6 6 C 1.38236 * 120.00747 * 264.72700 * 5 4 2 7 7 C 1.38229 * 120.01191 * 179.76539 * 6 5 4 8 8 C 1.38267 * 120.02509 * 0.50625 * 7 6 5 9 9 C 1.38190 * 120.01331 * 359.74462 * 8 7 6 10 10 C 1.38328 * 120.00624 * 84.99508 * 5 4 2 11 11 Cl 1.73599 * 120.01437 * 359.96222 * 10 5 4 12 12 N 1.46506 * 109.47171 * 240.00395 * 2 1 3 13 13 C 1.34773 * 119.99968 * 84.99494 * 12 2 1 14 14 O 1.21341 * 120.00351 * 359.73051 * 13 12 2 15 15 C 1.49456 * 119.99966 * 180.02562 * 13 12 2 16 16 O 1.21355 * 119.99792 * 359.72883 * 15 13 12 17 17 N 1.34777 * 119.99994 * 179.73002 * 15 13 12 18 18 C 1.46496 * 119.99614 * 180.02562 * 17 15 13 19 19 C 1.52998 * 109.46851 * 179.97438 * 18 17 15 20 20 C 1.50706 * 109.47348 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99758 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00102 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00213 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99763 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47016 * 60.00372 * 24 22 20 26 26 H 1.48501 * 109.47055 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47483 * 300.00015 * 24 22 20 28 28 H 1.09000 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46922 * 299.99659 * 1 2 3 30 30 H 1.08995 * 109.47099 * 59.99900 * 1 2 3 31 31 H 1.09000 * 109.47028 * 305.00310 * 4 2 1 32 32 H 1.09004 * 109.47139 * 64.99475 * 4 2 1 33 33 H 1.07997 * 119.99439 * 359.97438 * 6 5 4 34 34 H 1.07993 * 119.98444 * 180.22661 * 7 6 5 35 35 H 1.07993 * 119.99081 * 179.76783 * 8 7 6 36 36 H 1.08000 * 120.00767 * 180.02562 * 9 8 7 37 37 H 0.97004 * 120.00014 * 265.00346 * 12 2 1 38 38 H 0.96996 * 119.99887 * 359.97438 * 17 15 13 39 39 H 1.09000 * 109.47287 * 299.99298 * 18 17 15 40 40 H 1.09002 * 109.47320 * 59.99900 * 18 17 15 41 41 H 1.09001 * 109.47671 * 299.99654 * 19 18 17 42 42 H 1.09006 * 109.47297 * 59.99934 * 19 18 17 43 43 H 0.96999 * 120.00124 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5419 -0.6150 1.3126 6 6 4.3289 -1.6350 0.8116 7 6 5.7066 -1.5355 0.8654 8 6 6.2982 -0.4204 1.4297 9 6 5.5124 0.5976 1.9356 10 6 4.1332 0.5008 1.8773 11 17 3.1455 1.7795 2.5121 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 8 1.8536 1.1580 -2.4129 15 6 2.6446 -0.7228 -3.5777 16 8 2.9375 -1.8991 -3.5221 17 7 2.7680 -0.0517 -4.7399 18 6 3.2553 -0.7425 -5.9363 19 6 3.2999 0.2388 -7.1093 20 6 3.8018 -0.4716 -8.3400 21 1 4.0624 -1.5186 -8.2905 22 6 3.9282 0.2149 -9.5289 23 7 3.6113 1.4899 -9.5890 24 14 4.5509 -0.6656 -11.0541 25 1 3.6381 -1.7896 -11.3842 26 1 4.5941 0.2869 -12.1926 27 1 5.9148 -1.1943 -10.7984 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6055 -0.2619 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 3.8674 -2.5084 0.3750 34 1 6.3210 -2.3310 0.4705 35 1 7.3745 -0.3449 1.4748 36 1 5.9745 1.4687 2.3760 37 1 2.2490 -1.6318 -1.1528 38 1 2.5335 0.8885 -4.7844 39 1 4.2563 -1.1312 -5.7491 40 1 2.5847 -1.5671 -6.1783 41 1 2.2988 0.6272 -7.2965 42 1 3.9703 1.0637 -6.8676 43 1 3.6999 1.9728 -10.4256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321910793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:31 Heat of formation + Delta-G solvation = -73.619868 kcal Electronic energy + Delta-G solvation = -26131.819052 eV Core-core repulsion = 22202.018850 eV Total energy + Delta-G solvation = -3929.800202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60702 -39.76622 -38.36338 -36.74628 -36.44050 -35.05218 -32.96915 -32.64327 -31.15672 -30.71904 -29.78695 -26.92715 -25.77332 -23.94365 -23.09059 -22.22529 -21.17771 -20.90740 -20.18957 -18.26126 -17.38482 -16.97225 -16.43552 -15.91152 -15.85566 -15.74693 -15.27570 -14.84236 -14.53687 -14.44225 -14.16218 -14.05459 -13.96820 -13.50970 -13.16871 -12.99492 -12.68072 -12.54718 -12.36004 -12.30771 -11.87644 -11.79558 -11.64150 -11.44698 -11.26420 -11.21493 -11.04795 -10.98577 -10.68646 -10.38710 -9.78941 -9.44393 -9.36891 -9.24525 -9.17733 -8.96678 -8.68606 -8.41412 -6.09961 -4.13849 0.81142 0.91463 1.65099 1.82069 2.55789 3.26896 3.30352 3.34635 3.37227 3.46126 3.88803 4.20438 4.36730 4.40115 4.50622 4.65387 4.78529 4.84056 4.92717 5.01554 5.04593 5.24483 5.26744 5.28232 5.40988 5.44836 5.58431 5.71699 5.86681 5.96788 5.99508 6.10048 6.18407 6.23918 6.23957 6.45108 6.60296 6.69962 7.08963 7.47317 7.58119 7.69400 7.87166 7.96079 8.21963 8.35241 8.91536 9.50998 11.01504 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002266 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.622436 B =12354.802703 C =12909.240041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 H 0.096 0.904 4 C -0.093 4.093 5 C -0.075 4.075 6 C -0.101 4.101 7 C -0.110 4.110 8 C -0.111 4.111 9 C -0.109 4.109 10 C -0.033 4.033 11 Cl -0.068 7.068 12 N -0.699 5.699 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.497 3.503 16 O -0.535 6.535 17 N -0.686 5.686 18 C 0.119 3.881 19 C 0.011 3.989 20 C -0.524 4.524 21 H 0.059 0.941 22 C 0.060 3.940 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.409 0.591 38 H 0.410 0.590 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 -3.874 28.250 28.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.114 0.886 4 C -0.131 4.131 5 C -0.076 4.076 6 C -0.119 4.119 7 C -0.128 4.128 8 C -0.129 4.129 9 C -0.128 4.128 10 C -0.060 4.060 11 Cl -0.039 7.039 12 N -0.354 5.354 13 C 0.290 3.710 14 O -0.393 6.393 15 C 0.276 3.724 16 O -0.413 6.413 17 N -0.337 5.337 18 C -0.002 4.002 19 C -0.026 4.026 20 C -0.563 4.563 21 H 0.078 0.922 22 C -0.142 4.142 23 N -0.531 5.531 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.245 0.755 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.050 -3.574 28.151 28.397 hybrid contribution 0.339 -0.229 -0.866 0.958 sum -0.711 -3.803 27.285 27.558 Atomic orbital electron populations 1.22187 0.94323 1.02593 1.03137 1.21012 0.94380 0.97846 0.82651 0.88634 1.21016 0.90791 1.02584 0.98696 1.19661 0.96113 0.93321 0.98502 1.21067 0.93708 0.98311 0.98810 1.21302 0.94934 0.98256 0.98270 1.21152 1.00192 0.93463 0.98072 1.21065 0.91428 0.99876 1.00411 1.20824 0.91803 0.91039 1.02288 1.98370 1.70278 1.49980 1.85290 1.45821 1.66034 1.14714 1.08805 1.20434 0.78680 0.87018 0.84844 1.90753 1.48242 1.15497 1.84849 1.20012 0.80419 0.87162 0.84767 1.90716 1.49991 1.15419 1.85152 1.46231 1.62952 1.15193 1.09316 1.21922 0.98418 0.96889 0.83019 1.19350 0.98218 0.94259 0.90787 1.20976 1.44706 0.96708 0.93890 0.92230 1.24999 0.95269 0.94879 0.99100 1.69950 1.47956 1.08251 1.26921 0.86558 0.79479 0.79343 0.82055 1.20100 1.21222 1.20100 0.92056 0.91237 0.91466 0.88466 0.89579 0.85021 0.85172 0.85080 0.84962 0.75462 0.75406 0.91916 0.91902 0.95676 0.95685 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.15 0.35 -1.03 16 2 C 0.15 1.38 2.56 -67.93 -0.17 1.21 16 3 H 0.10 1.11 7.38 -51.93 -0.38 0.73 16 4 C -0.09 -0.68 4.40 -27.89 -0.12 -0.80 16 5 C -0.08 -0.66 4.89 -104.59 -0.51 -1.17 16 6 C -0.10 -0.84 9.38 -39.59 -0.37 -1.21 16 7 C -0.11 -0.89 10.05 -39.57 -0.40 -1.29 16 8 C -0.11 -0.88 10.05 -39.59 -0.40 -1.28 16 9 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 10 C -0.03 -0.31 6.31 -39.50 -0.25 -0.56 16 11 Cl -0.07 -0.61 27.20 -51.86 -1.41 -2.02 16 12 N -0.70 -7.93 4.67 -54.24 -0.25 -8.19 16 13 C 0.51 7.65 7.85 -11.58 -0.09 7.56 16 14 O -0.52 -8.84 16.14 5.50 0.09 -8.75 16 15 C 0.50 8.56 7.89 -11.58 -0.09 8.47 16 16 O -0.53 -9.93 16.48 5.49 0.09 -9.84 16 17 N -0.69 -12.60 5.55 -60.73 -0.34 -12.94 16 18 C 0.12 2.50 5.61 -4.04 -0.02 2.47 16 19 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 20 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 21 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 24 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.63 7.13 -51.93 -0.37 0.26 16 32 H 0.09 0.48 8.05 -51.93 -0.42 0.06 16 33 H 0.13 0.89 8.03 -52.49 -0.42 0.47 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.41 4.12 7.87 -40.82 -0.32 3.80 16 38 H 0.41 7.25 7.94 -40.82 -0.32 6.93 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -31.81 385.78 -9.32 -41.13 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.01 Total: 5.96 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -3.02 Total: -1.97 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.15 Total: -46.56 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.18 Total: -18.60 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.41 Total: -2.02 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.81 -9.32 -41.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321910793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.487 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds