Wall clock time and date at job start Tue Mar 31 2020 20:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46880 * 2 1 4 4 N 1.46504 * 109.46917 * 239.99870 * 2 1 3 5 5 C 1.34778 * 119.99760 * 85.00613 * 4 2 1 6 6 O 1.21343 * 120.00336 * 359.97438 * 5 4 2 7 7 C 1.49447 * 119.99678 * 179.97438 * 5 4 2 8 8 O 1.21348 * 120.00395 * 6.74047 * 7 5 4 9 9 N 1.34773 * 119.99767 * 186.74023 * 7 5 4 10 10 C 1.46927 * 120.63537 * 8.42403 * 9 7 5 11 11 C 1.53630 * 108.54554 * 126.36608 * 10 9 7 12 12 C 1.53030 * 109.23997 * 54.86079 * 11 10 9 13 13 C 1.53043 * 109.54185 * 298.50868 * 12 11 10 14 14 H 1.09005 * 109.49762 * 301.41841 * 13 12 11 15 15 C 1.50700 * 109.52917 * 181.33476 * 13 12 11 16 16 H 1.07995 * 119.99621 * 0.14459 * 15 13 12 17 17 C 1.37873 * 119.99821 * 180.14720 * 15 13 12 18 18 N 1.31511 * 120.00467 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99684 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46983 * 89.99870 * 19 17 15 21 21 H 1.48500 * 109.46920 * 209.99601 * 19 17 15 22 22 H 1.48498 * 109.47137 * 330.00107 * 19 17 15 23 23 C 1.46930 * 120.63245 * 188.70083 * 9 7 5 24 24 C 1.50693 * 109.46801 * 119.99775 * 2 1 3 25 25 C 1.35343 * 123.77191 * 274.72876 * 24 2 1 26 26 S 1.72111 * 104.15545 * 179.90448 * 25 24 2 27 27 N 1.56507 * 95.88714 * 0.32246 * 26 25 24 28 28 N 1.27578 * 109.22308 * 359.80882 * 27 26 25 29 29 H 1.08996 * 109.47603 * 300.00399 * 1 2 3 30 30 H 1.09004 * 109.46798 * 60.00205 * 1 2 3 31 31 H 1.09001 * 109.47402 * 179.97438 * 1 2 3 32 32 H 0.96994 * 119.99852 * 264.99511 * 4 2 1 33 33 H 1.08997 * 109.58907 * 246.20613 * 10 9 7 34 34 H 1.08999 * 109.58329 * 6.62820 * 10 9 7 35 35 H 1.09008 * 109.63004 * 294.86860 * 11 10 9 36 36 H 1.08996 * 109.42731 * 174.73228 * 11 10 9 37 37 H 1.08998 * 109.45981 * 178.49175 * 12 11 10 38 38 H 1.09001 * 109.45288 * 58.52285 * 12 11 10 39 39 H 0.97005 * 120.00467 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.58516 * 353.37376 * 23 9 7 41 41 H 1.09002 * 109.58709 * 113.65787 * 23 9 7 42 42 H 1.08000 * 127.91748 * 359.97438 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1590 -2.4118 7 6 2.6458 -0.7227 -3.5772 8 8 2.8183 -1.9237 -3.5566 9 7 2.9039 -0.0240 -4.7005 10 6 2.8782 1.4450 -4.6910 11 6 4.2113 1.9606 -5.2543 12 6 4.4466 1.3455 -6.6356 13 6 4.5342 -0.1772 -6.5098 14 1 5.3449 -0.4401 -5.8302 15 6 4.7986 -0.7804 -7.8653 16 1 4.8971 -0.1417 -8.7305 17 6 4.9147 -2.1475 -8.0007 18 7 4.7952 -2.9252 -6.9469 19 14 5.2417 -2.8952 -9.6811 20 1 6.7069 -2.9986 -9.9002 21 1 4.6346 -4.2488 -9.7472 22 1 4.6438 -2.0325 -10.7315 23 6 3.2104 -0.7170 -5.9593 24 6 2.0323 -0.7103 1.2305 25 6 2.1956 -0.1094 2.4321 26 16 2.7782 -1.3651 3.4549 27 7 2.7799 -2.4794 2.3560 28 7 2.3668 -1.9844 1.2551 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 2.0547 1.8001 -5.3105 34 1 2.7495 1.8015 -3.6690 35 1 5.0250 1.6776 -4.5865 36 1 4.1723 3.0464 -5.3413 37 1 5.3786 1.7297 -7.0502 38 1 3.6199 1.6083 -7.2957 39 1 4.8773 -3.8871 -7.0421 40 1 3.3008 -1.7874 -5.7745 41 1 2.4122 -0.5366 -6.6794 42 1 2.0031 0.9215 2.6902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329094021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:14 Heat of formation + Delta-G solvation = 15.727318 kcal Electronic energy + Delta-G solvation = -27150.281029 eV Core-core repulsion = 23258.691669 eV Total energy + Delta-G solvation = -3891.589359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49524 -40.42149 -38.40763 -36.82238 -35.98451 -33.30873 -32.57421 -31.70025 -30.11749 -29.71402 -27.47845 -26.03304 -25.00437 -24.28339 -22.41146 -21.78111 -21.36526 -20.11475 -19.16689 -18.58611 -17.31443 -16.61119 -16.24096 -16.14516 -16.00540 -15.72016 -15.17773 -14.90321 -14.49123 -14.18748 -13.95610 -13.73225 -13.34324 -13.13485 -12.91093 -12.76844 -12.55817 -12.47224 -12.25393 -12.13536 -11.76674 -11.74355 -11.35745 -10.96216 -10.69420 -10.51613 -10.43771 -10.34702 -10.28219 -10.14511 -10.10374 -9.86191 -9.34610 -9.19977 -9.09535 -8.58505 -8.42287 -7.79660 -5.98758 -4.07733 -0.17041 0.68544 1.28708 1.73447 1.81293 2.63666 3.31990 3.39341 3.41678 3.49562 3.65044 3.95974 4.33892 4.43763 4.50379 4.68224 4.81605 4.84414 5.04081 5.31005 5.34882 5.51360 5.62012 5.66243 5.83786 5.89370 6.07381 6.25315 6.37510 6.51804 6.61552 6.72362 6.86275 7.00333 7.04761 7.19833 7.26047 7.35482 7.61518 7.84434 7.94567 7.98193 8.17920 8.37694 8.60555 8.96307 9.57869 11.06380 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.002648 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.376013 B =10569.566315 C =11471.772878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.115 0.885 4 N -0.698 5.698 5 C 0.515 3.485 6 O -0.519 6.519 7 C 0.493 3.507 8 O -0.515 6.515 9 N -0.570 5.570 10 C 0.071 3.929 11 C -0.133 4.133 12 C -0.113 4.113 13 C 0.041 3.959 14 H 0.030 0.970 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.880 5.880 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.108 3.892 24 C 0.019 3.981 25 C -0.287 4.287 26 S 0.432 5.568 27 N -0.278 5.278 28 N -0.230 5.230 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.423 0.577 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.264 0.736 40 H 0.124 0.876 41 H 0.048 0.952 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 9.170 21.885 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.121 3.879 3 H 0.132 0.868 4 N -0.353 5.353 5 C 0.298 3.702 6 O -0.396 6.396 7 C 0.274 3.726 8 O -0.392 6.392 9 N -0.302 5.302 10 C -0.051 4.051 11 C -0.171 4.171 12 C -0.150 4.150 13 C 0.022 3.978 14 H 0.048 0.952 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.518 5.518 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.011 4.011 24 C -0.127 4.127 25 C -0.443 4.443 26 S 0.568 5.432 27 N -0.258 5.258 28 N -0.097 5.097 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.262 0.738 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.142 0.858 41 H 0.067 0.933 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.272 7.452 22.624 24.905 hybrid contribution -0.226 0.399 -1.758 1.817 sum -7.498 7.851 20.866 23.521 Atomic orbital electron populations 1.22217 0.92815 1.03411 1.03531 1.19374 0.94732 0.95643 0.78184 0.86751 1.45845 1.65666 1.15813 1.07952 1.20809 0.77935 0.86722 0.84782 1.90458 1.49416 1.15530 1.84231 1.19739 0.81145 0.87502 0.84210 1.90801 1.51434 1.13978 1.82968 1.48429 1.64445 1.07477 1.09836 1.22782 0.97364 0.79427 1.05509 1.22034 0.97193 0.99075 0.98840 1.21654 1.00333 0.98790 0.94253 1.18959 0.92943 0.89270 0.96634 0.95221 1.21080 1.49720 0.91682 0.93402 0.92282 1.25064 0.94930 0.97413 0.96670 1.69880 1.48836 1.04573 1.28471 0.86585 0.78379 0.78585 0.84403 1.20691 1.21173 1.19911 1.22486 0.97856 1.01046 0.79760 1.22398 1.02554 0.90226 0.97475 1.28064 1.09731 1.08971 0.97547 1.81519 1.45211 0.94745 1.21768 1.78916 1.21027 1.25410 1.00423 1.71118 1.11828 1.10763 1.16015 0.91044 0.90334 0.91586 0.73839 0.92145 0.85692 0.92448 0.92183 0.93084 0.93163 0.92611 0.85810 0.93319 0.78095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.47 37.16 0.35 -1.03 16 2 C 0.23 2.33 2.96 -69.08 -0.20 2.12 16 3 H 0.11 1.06 7.58 -51.93 -0.39 0.66 16 4 N -0.70 -9.65 5.06 -55.36 -0.28 -9.93 16 5 C 0.51 8.45 7.71 -11.59 -0.09 8.36 16 6 O -0.52 -8.36 12.84 5.50 0.07 -8.29 16 7 C 0.49 10.15 7.73 -11.59 -0.09 10.06 16 8 O -0.52 -12.24 15.93 5.50 0.09 -12.15 16 9 N -0.57 -11.96 2.97 -173.00 -0.51 -12.48 16 10 C 0.07 1.26 6.01 -3.48 -0.02 1.24 16 11 C -0.13 -2.33 6.10 -26.39 -0.16 -2.49 16 12 C -0.11 -2.32 5.11 -26.69 -0.14 -2.45 16 13 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 14 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 15 C -0.52 -14.18 8.57 -34.44 -0.30 -14.47 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.88 -25.69 11.39 55.43 0.63 -25.06 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.11 2.65 5.41 -3.71 -0.02 2.63 16 24 C 0.02 0.18 5.92 -83.66 -0.50 -0.31 16 25 C -0.29 -1.79 11.36 29.70 0.34 -1.45 16 26 S 0.43 2.80 23.40 -107.50 -2.52 0.29 16 27 N -0.28 -3.15 12.54 60.35 0.76 -2.40 16 28 N -0.23 -2.84 10.74 32.45 0.35 -2.49 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.42 6.33 7.36 -40.82 -0.30 6.03 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.13 2.10 4.30 -54.84 -0.24 1.86 16 35 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 40 H 0.12 3.49 5.12 -51.93 -0.27 3.22 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.20 0.53 8.06 -52.49 -0.42 0.10 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -32.65 359.51 -7.53 -40.18 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.39 Total: 5.92 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.12 Total: 4.65 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.94 Total: -52.35 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.16 Total: -20.43 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.52 Total: 0.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.65 -7.53 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329094021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.905 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds