Wall clock time and date at job start Tue Mar 31 2020 20:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46880 * 2 1 4 4 N 1.46504 * 109.46917 * 239.99870 * 2 1 3 5 5 C 1.34778 * 119.99760 * 85.00613 * 4 2 1 6 6 O 1.21343 * 120.00336 * 359.97438 * 5 4 2 7 7 C 1.49447 * 119.99678 * 179.97438 * 5 4 2 8 8 O 1.21348 * 120.00395 * 6.74047 * 7 5 4 9 9 N 1.34773 * 119.99767 * 186.74023 * 7 5 4 10 10 C 1.46927 * 120.63537 * 8.42403 * 9 7 5 11 11 C 1.53630 * 108.54554 * 126.36608 * 10 9 7 12 12 C 1.53030 * 109.23997 * 54.86079 * 11 10 9 13 13 C 1.53043 * 109.54185 * 298.50868 * 12 11 10 14 14 H 1.09005 * 109.49762 * 301.41841 * 13 12 11 15 15 C 1.50700 * 109.52917 * 181.33476 * 13 12 11 16 16 H 1.07995 * 119.99621 * 0.14459 * 15 13 12 17 17 C 1.37873 * 119.99821 * 180.14720 * 15 13 12 18 18 N 1.31511 * 120.00467 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99684 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46983 * 89.99870 * 19 17 15 21 21 H 1.48500 * 109.46920 * 209.99601 * 19 17 15 22 22 H 1.48498 * 109.47137 * 330.00107 * 19 17 15 23 23 C 1.46930 * 120.63245 * 188.70083 * 9 7 5 24 24 C 1.50693 * 109.46801 * 119.99775 * 2 1 3 25 25 C 1.35343 * 123.77191 * 274.72876 * 24 2 1 26 26 S 1.72111 * 104.15545 * 179.90448 * 25 24 2 27 27 N 1.56507 * 95.88714 * 0.32246 * 26 25 24 28 28 N 1.27578 * 109.22308 * 359.80882 * 27 26 25 29 29 H 1.08996 * 109.47603 * 300.00399 * 1 2 3 30 30 H 1.09004 * 109.46798 * 60.00205 * 1 2 3 31 31 H 1.09001 * 109.47402 * 179.97438 * 1 2 3 32 32 H 0.96994 * 119.99852 * 264.99511 * 4 2 1 33 33 H 1.08997 * 109.58907 * 246.20613 * 10 9 7 34 34 H 1.08999 * 109.58329 * 6.62820 * 10 9 7 35 35 H 1.09008 * 109.63004 * 294.86860 * 11 10 9 36 36 H 1.08996 * 109.42731 * 174.73228 * 11 10 9 37 37 H 1.08998 * 109.45981 * 178.49175 * 12 11 10 38 38 H 1.09001 * 109.45288 * 58.52285 * 12 11 10 39 39 H 0.97005 * 120.00467 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.58516 * 353.37376 * 23 9 7 41 41 H 1.09002 * 109.58709 * 113.65787 * 23 9 7 42 42 H 1.08000 * 127.91748 * 359.97438 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1590 -2.4118 7 6 2.6458 -0.7227 -3.5772 8 8 2.8183 -1.9237 -3.5566 9 7 2.9039 -0.0240 -4.7005 10 6 2.8782 1.4450 -4.6910 11 6 4.2113 1.9606 -5.2543 12 6 4.4466 1.3455 -6.6356 13 6 4.5342 -0.1772 -6.5098 14 1 5.3449 -0.4401 -5.8302 15 6 4.7986 -0.7804 -7.8653 16 1 4.8971 -0.1417 -8.7305 17 6 4.9147 -2.1475 -8.0007 18 7 4.7952 -2.9252 -6.9469 19 14 5.2417 -2.8952 -9.6811 20 1 6.7069 -2.9986 -9.9002 21 1 4.6346 -4.2488 -9.7472 22 1 4.6438 -2.0325 -10.7315 23 6 3.2104 -0.7170 -5.9593 24 6 2.0323 -0.7103 1.2305 25 6 2.1956 -0.1094 2.4321 26 16 2.7782 -1.3651 3.4549 27 7 2.7799 -2.4794 2.3560 28 7 2.3668 -1.9844 1.2551 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 2.0547 1.8001 -5.3105 34 1 2.7495 1.8015 -3.6690 35 1 5.0250 1.6776 -4.5865 36 1 4.1723 3.0464 -5.3413 37 1 5.3786 1.7297 -7.0502 38 1 3.6199 1.6083 -7.2957 39 1 4.8773 -3.8871 -7.0421 40 1 3.3008 -1.7874 -5.7745 41 1 2.4122 -0.5366 -6.6794 42 1 2.0031 0.9215 2.6902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329094021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:14 Heat of formation + Delta-G solvation = -8.256768 kcal Electronic energy + Delta-G solvation = -27151.321057 eV Core-core repulsion = 23258.691669 eV Total energy + Delta-G solvation = -3892.629387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.30485 -41.74455 -39.87155 -38.50840 -37.03432 -35.21587 -33.61862 -33.31340 -31.56424 -30.87921 -28.18251 -27.64957 -26.83201 -25.36092 -23.75939 -23.43131 -22.07188 -21.55821 -20.58807 -19.61413 -18.78919 -18.28975 -17.78302 -17.14426 -16.88701 -16.78210 -16.67418 -16.37349 -15.95924 -15.51089 -15.20502 -15.03046 -14.80059 -14.63419 -14.42955 -14.07630 -13.90723 -13.50898 -13.49260 -13.14969 -13.02114 -12.89032 -12.74867 -12.49339 -12.45381 -12.28659 -12.14555 -11.74799 -11.63040 -11.15395 -11.13295 -10.99572 -10.97452 -10.78313 -10.54286 -10.41540 -10.08761 -9.54050 -8.11215 -6.28626 -0.75003 0.16177 0.34162 0.69014 1.03984 1.35026 1.41901 1.42692 1.52886 2.12208 2.40768 2.51128 2.88687 3.16649 3.32092 3.65951 3.92161 4.10228 4.13707 4.18110 4.20109 4.33690 4.48500 4.59240 4.63188 4.73788 4.78712 4.82584 4.89775 5.07254 5.14887 5.21092 5.24046 5.26822 5.34618 5.49665 5.57530 5.84626 5.93286 5.96823 6.29413 6.41643 6.63478 6.75401 6.83697 6.98574 7.41499 8.92192 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.002648 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.376013 B =10569.566315 C =11471.772878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.227 3.773 3 H 0.132 0.868 4 N -0.689 5.689 5 C 0.528 3.472 6 O -0.512 6.512 7 C 0.482 3.518 8 O -0.559 6.559 9 N -0.575 5.575 10 C 0.071 3.929 11 C -0.126 4.126 12 C -0.107 4.107 13 C 0.039 3.961 14 H -0.013 1.013 15 C -0.535 4.535 16 H 0.064 0.936 17 C 0.010 3.990 18 N -0.915 5.915 19 Si 0.959 3.041 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.262 1.262 23 C 0.120 3.880 24 C -0.004 4.004 25 C -0.264 4.264 26 S 0.508 5.492 27 N -0.340 5.340 28 N -0.275 5.275 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.416 0.584 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.047 0.953 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.260 0.740 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 12.288 23.414 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.120 3.880 3 H 0.149 0.851 4 N -0.342 5.342 5 C 0.309 3.691 6 O -0.390 6.390 7 C 0.264 3.736 8 O -0.439 6.439 9 N -0.307 5.307 10 C -0.050 4.050 11 C -0.164 4.164 12 C -0.144 4.144 13 C 0.020 3.980 14 H 0.005 0.995 15 C -0.573 4.573 16 H 0.082 0.918 17 C -0.190 4.190 18 N -0.553 5.553 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.186 1.186 23 C -0.001 4.001 24 C -0.150 4.150 25 C -0.420 4.420 26 S 0.642 5.358 27 N -0.318 5.318 28 N -0.141 5.141 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.254 0.746 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.073 10.608 24.174 27.605 hybrid contribution 0.034 -0.527 -2.052 2.119 sum -8.039 10.081 22.121 25.604 Atomic orbital electron populations 1.22194 0.91545 1.02981 1.04696 1.19703 0.95694 0.95899 0.76662 0.85082 1.45908 1.64441 1.15522 1.08325 1.19788 0.78624 0.86503 0.84174 1.90435 1.49815 1.14785 1.84009 1.20575 0.80234 0.87278 0.85480 1.90771 1.53077 1.16073 1.83952 1.48464 1.64276 1.09004 1.08960 1.23055 0.98050 0.76968 1.06905 1.22007 0.96639 1.01353 0.96359 1.21550 1.00904 0.95329 0.96644 1.18900 0.91641 0.92708 0.94775 0.99457 1.21493 1.49238 0.92104 0.94507 0.91809 1.25906 0.94787 0.98039 1.00248 1.70077 1.50050 1.04474 1.30716 0.85539 0.78302 0.77599 0.80130 1.20178 1.21299 1.18574 1.21946 0.97565 0.99153 0.81473 1.22382 1.04238 0.90028 0.98397 1.28576 1.06731 1.10675 0.95990 1.81182 1.42602 0.92875 1.19092 1.78576 1.23414 1.28329 1.01526 1.71117 1.13236 1.12385 1.17354 0.87626 0.91307 0.92842 0.74646 0.90604 0.84134 0.93423 0.87917 0.92752 0.92278 0.93059 0.89937 0.93517 0.73874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.47 71.98 0.68 -1.68 16 2 C 0.23 4.19 2.96 44.24 0.13 4.32 16 3 H 0.13 1.99 7.58 -2.39 -0.02 1.97 16 4 N -0.69 -19.01 5.06 -447.44 -2.26 -21.28 16 5 C 0.53 17.17 7.71 87.27 0.67 17.85 16 6 O -0.51 -15.49 12.84 -3.22 -0.04 -15.53 16 7 C 0.48 20.54 7.73 87.27 0.67 21.21 16 8 O -0.56 -28.35 15.93 -3.24 -0.05 -28.41 16 9 N -0.58 -24.66 2.97 -819.62 -2.43 -27.09 16 10 C 0.07 2.38 6.01 86.51 0.52 2.90 16 11 C -0.13 -4.13 6.10 30.82 0.19 -3.95 16 12 C -0.11 -4.30 5.11 30.62 0.16 -4.14 16 13 C 0.04 2.02 2.25 -11.46 -0.03 1.99 16 14 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 15 C -0.54 -29.81 8.57 25.60 0.22 -29.59 16 16 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 17 C 0.01 0.55 5.30 84.65 0.45 1.00 16 18 N -0.91 -56.03 11.39 21.45 0.24 -55.79 16 19 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 23 C 0.12 6.14 5.41 86.36 0.47 6.61 16 24 C 0.00 -0.07 5.92 41.90 0.25 0.17 16 25 C -0.26 -2.33 11.36 67.15 0.76 -1.57 16 26 S 0.51 5.38 23.40 -56.49 -1.32 4.06 16 27 N -0.34 -7.63 12.54 37.02 0.46 -7.17 16 28 N -0.27 -6.82 10.74 -51.26 -0.55 -7.37 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.42 13.04 7.36 -92.71 -0.68 12.36 16 33 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.14 4.37 4.30 -48.54 -0.21 4.16 16 35 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 40 H 0.08 4.96 5.12 -2.39 -0.01 4.95 16 41 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.24 -0.16 8.06 -2.91 -0.02 -0.18 16 Total: -1.00 -76.86 359.51 1.41 -75.45 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.19 Total: 21.29 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 5.14 Total: 15.14 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -4.54 Total: -118.69 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -0.09 Total: -43.94 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.32 Total: 4.06 kcal Total: -76.86 1.41 -75.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329094021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.198 kcal (2) G-P(sol) polarization free energy of solvation -76.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds